CX069560

Overview
NameCX069560
Unique NameCX069560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: SPAST_DROPE (Spastin OS=Drosophila persimilis GN=spas PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.114e-17
Identity = 46/95 (48.42%), Postives = 62/95 (65.26%), Query Frame = 3
Query:  546 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            I G +   + ++E++ LP   PELF  L  A  KG+LL+GPPG GKTLLARAVA     TF+ +S + L  KY+G+G ++VR LF +AR   PSI
Sbjct:  515 IAGQEVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHLQPSI 608          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: KTNA1_MACFA (Katanin p60 ATPase-containing subunit A1 OS=Macaca fascicularis GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.761e-17
Identity = 51/106 (48.11%), Postives = 68/106 (64.15%), Query Frame = 3
Query:  513 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPS 827
            + + P+  +D I  L +  K +KE + LP+  PE F+  GI +P KGVL+ GPPGTGKTLLA+AVA     TF  VS S L  KY GE  ++VR LF MAR ++P+
Sbjct:  200 ISQNPNVRWDDIADLVEAKKLLKEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPA 303          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: KTNA1_HUMAN (Katanin p60 ATPase-containing subunit A1 OS=Homo sapiens GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.761e-17
Identity = 51/106 (48.11%), Postives = 68/106 (64.15%), Query Frame = 3
Query:  513 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPS 827
            + + P+  +D I  L +  K +KE + LP+  PE F+  GI +P KGVL+ GPPGTGKTLLA+AVA     TF  VS S L  KY GE  ++VR LF MAR ++P+
Sbjct:  200 ISQNPNVRWDDIADLVEAKKLLKEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPA 303          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: KATL1_SORAR (Katanin p60 ATPase-containing subunit A-like 1 OS=Sorex araneus GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.761e-17
Identity = 50/106 (47.17%), Postives = 68/106 (64.15%), Query Frame = 3
Query:  513 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPS 827
            V + P   +D I  L++  K ++E + LP+  P+ F+  GI +P KGVL+ GPPGTGKT+LA+AVA     TF  VS S L  KY GE  ++VR LF MAR +AP+
Sbjct:  199 VSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFK--GIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPT 302          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: KATL1_RAT (Katanin p60 ATPase-containing subunit A-like 1 OS=Rattus norvegicus GN=Katnal1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.761e-17
Identity = 50/106 (47.17%), Postives = 68/106 (64.15%), Query Frame = 3
Query:  513 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPS 827
            V + P   +D I  L++  K ++E + LP+  P+ F+  GI +P KGVL+ GPPGTGKT+LA+AVA     TF  VS S L  KY GE  ++VR LF MAR +AP+
Sbjct:  197 VSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFK--GIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPT 300          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: KATL1_RABIT (Katanin p60 ATPase-containing subunit A-like 1 OS=Oryctolagus cuniculus GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.761e-17
Identity = 50/106 (47.17%), Postives = 68/106 (64.15%), Query Frame = 3
Query:  513 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPS 827
            V + P   +D I  L++  K ++E + LP+  P+ F+  GI +P KGVL+ GPPGTGKT+LA+AVA     TF  VS S L  KY GE  ++VR LF MAR +AP+
Sbjct:  199 VSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFK--GIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPT 302          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: KATL1_PAPAN (Katanin p60 ATPase-containing subunit A-like 1 OS=Papio anubis GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.761e-17
Identity = 50/106 (47.17%), Postives = 68/106 (64.15%), Query Frame = 3
Query:  513 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPS 827
            V + P   +D I  L++  K ++E + LP+  P+ F+  GI +P KGVL+ GPPGTGKT+LA+AVA     TF  VS S L  KY GE  ++VR LF MAR +AP+
Sbjct:  199 VSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFK--GIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPT 302          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: KATL1_OTOGA (Katanin p60 ATPase-containing subunit A-like 1 OS=Otolemur garnettii GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.761e-17
Identity = 50/106 (47.17%), Postives = 68/106 (64.15%), Query Frame = 3
Query:  513 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPS 827
            V + P   +D I  L++  K ++E + LP+  P+ F+  GI +P KGVL+ GPPGTGKT+LA+AVA     TF  VS S L  KY GE  ++VR LF MAR +AP+
Sbjct:  199 VSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFK--GIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPT 302          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: KATL1_MOUSE (Katanin p60 ATPase-containing subunit A-like 1 OS=Mus musculus GN=Katnal1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.761e-17
Identity = 50/106 (47.17%), Postives = 68/106 (64.15%), Query Frame = 3
Query:  513 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPS 827
            V + P   +D I  L++  K ++E + LP+  P+ F+  GI +P KGVL+ GPPGTGKT+LA+AVA     TF  VS S L  KY GE  ++VR LF MAR +AP+
Sbjct:  197 VSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFK--GIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPT 300          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: KATL1_HUMAN (Katanin p60 ATPase-containing subunit A-like 1 OS=Homo sapiens GN=KATNAL1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.761e-17
Identity = 50/106 (47.17%), Postives = 68/106 (64.15%), Query Frame = 3
Query:  513 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPS 827
            V + P   +D I  L++  K ++E + LP+  P+ F+  GI +P KGVL+ GPPGTGKT+LA+AVA     TF  VS S L  KY GE  ++VR LF MAR +AP+
Sbjct:  199 VSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFK--GIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPT 302          
The following BLAST results are available for this feature:
BLAST of CX069560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 366
Match NameE-valueIdentityDescription
SPAST_DROPE2.114e-1748.42Spastin OS=Drosophila persimilis GN=spas PE=3 SV=1[more]
KTNA1_MACFA2.761e-1748.11Katanin p60 ATPase-containing subunit A1 OS=Macaca... [more]
KTNA1_HUMAN2.761e-1748.11Katanin p60 ATPase-containing subunit A1 OS=Homo s... [more]
KATL1_SORAR2.761e-1747.17Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_RAT2.761e-1747.17Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_RABIT2.761e-1747.17Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_PAPAN2.761e-1747.17Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_OTOGA2.761e-1747.17Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_MOUSE2.761e-1747.17Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_HUMAN2.761e-1747.17Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11C09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11C09-F17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069560 ID=CX069560; Name=CX069560; organism=Citrus sinensis; type=EST; length=832bp
GAGACTTGATCCGAAAGACAATTAGATTCGAACAAATCGAACTCGTTCAC
TCGGAAAGAATGGCCGCTGTAGGAATCGAAACGAAGCAGCCGGAATCGGC
GGCGCCAGAGGAGGTGTGTGCGGCGAAAGGAGCATCGAAACAAGGAGAGG
GATTGAGGCAATACTACCTCCAACACATTCACGAACTCCAGCTCCAAGTC
CGTCAAAAAACCCACAATCTCAATCGCCTCGAAGCCCAGCGTAACGAACT
CAATTCTAGAGTGCGGATGCTTAAAGAAGAATTACAGCTTCTTCAAGAGC
CTGGATCCTATGTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATAAGGTT
CTTGTTAAGGTTCATCCTGAGGGGAAATATGTTGTTGATATTGATAAAAG
TATTGATATAACCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAATG
ACAGCTATGTTCTTCATTTGATCCTGCCAAGCAAAGTAGATCCCCTGGTC
AACCTTATGAAGGTTGAAAAGGTCCCTGATTCTACATATGACATGATTGG
TGGCCTTGATCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCTA
TCAAACATCCCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGGT
GTATTGCTATATGGACCACCTGGTACTGGCAAAACACTGTTGGCTAGAGC
TGTGGCTCATCATACTGATTGTACTTTCATCAGGGTTTCTGGTTCTGAAT
TAGTCCAGAAATACATTGGAGAAGGCTCCAGAATGGTTAGAGAACTTTTT
GTTATGGCAAGGGAACATGCTCCGTCTATCAT
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