CX069560

Overview
NameCX069560
Unique NameCX069560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FTSH_BUCBP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ftsH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.761e-17
Identity = 42/99 (42.42%), Postives = 66/99 (66.67%), Query Frame = 3
Query:  534 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            T+  + G D+  +E++E++E  +K P  F+ LG   PKG+L+ GPPGTGKTLLA+A+A      F  +SGS+ V+ ++G G+  VR++F  +R+ AP I
Sbjct:  150 TFSDVAGCDEAKEEVQELVEY-LKEPSRFQKLGGKIPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEHSRKVAPCI 247          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FTSH_BUCAI (Cell division protease ftsH OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ftsH PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.761e-17
Identity = 42/100 (42.00%), Postives = 66/100 (66.00%), Query Frame = 3
Query:  531 STYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            +T+  + G D+  +E+ E++E  +K P  F+ LG   PKG+L+ GPPGTGKTLLA+A+A      F  +SGS+ V+ ++G G+  VR++F  +R+ AP I
Sbjct:  149 TTFADVAGCDEAKEEVSELVEY-LKEPSRFQKLGGKIPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEHSRKSAPCI 247          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FTSH_BACSU (Cell division protease ftsH homolog OS=Bacillus subtilis GN=ftsH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.761e-17
Identity = 44/95 (46.32%), Postives = 63/95 (66.32%), Query Frame = 3
Query:  546 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            + G D++ +E+ EV+E  +K P  F  LG   PKGVLL GPPGTGKTLLA+A A      F  +SGS+ V+ ++G G+  VR+LF  A+++AP +
Sbjct:  163 VAGADEEKQELVEVVEF-LKDPRKFAELGARIPKGVLLVGPPGTGKTLLAKACAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCL 256          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FTSH1_ORYSJ (Cell division protease ftsH homolog 1, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.761e-17
Identity = 48/109 (44.04%), Postives = 70/109 (64.22%), Query Frame = 3
Query:  510 KVEKVPDS--TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            K ++VP++  T+  + G DQ   E++EV++  +K+P+ + +LG   PKG LL GPPGTGKTLLARAVA      F   + SE V+ ++G G+  VR+LF  A+  AP I
Sbjct:  220 KFQEVPETGVTFVDVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKAKAPCI 327          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: RCA1_YEAST (Mitochondrial respiratory chain complexes assembly protein RCA1 OS=Saccharomyces cerevisiae GN=RCA1 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.607e-17
Identity = 45/95 (47.37%), Postives = 61/95 (64.21%), Query Frame = 3
Query:  546 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            + G D+  +EI E +   +K P  +E +G   P+G +L GPPGTGKTLLA+A A      F  VSGSE V+ ++G G+  VR+LF  ARE+APSI
Sbjct:  350 VAGCDEAKEEIMEFVSF-LKEPSRYEKMGAKIPRGAILSGPPGTGKTLLAKATAGEAGVPFYFVSGSEFVEMFVGVGAARVRDLFKTARENAPSI 443          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: KATL1_DANRE (Katanin p60 ATPase-containing subunit A-like 1 OS=Danio rerio GN=katnal1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.607e-17
Identity = 50/106 (47.17%), Postives = 68/106 (64.15%), Query Frame = 3
Query:  513 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPS 827
            V + P+  +D I  L+   K ++E + LP+  P+ F+  GI +P KGVL+ GPPGTGKT+LA+AVA     TF  VS S L  KY GE  ++VR LF MAR +AP+
Sbjct:  197 VSRNPNIHWDDIADLEDAKKLLREAVVLPMWMPDFFK--GIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPT 300          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FTSH_SHIFL (Cell division protease ftsH OS=Shigella flexneri GN=ftsH PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.607e-17
Identity = 44/108 (40.74%), Postives = 68/108 (62.96%), Query Frame = 3
Query:  507 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            M  E    +T+  + G D+  +E+ E++E  ++ P  F+ LG   PKGVL+ GPPGTGKTLLA+A+A      F  +SGS+ V+ ++G G+  VR++F  A++ AP I
Sbjct:  141 MLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCI 247          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FTSH_SALTY (Cell division protease ftsH OS=Salmonella typhimurium GN=ftsH PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.607e-17
Identity = 44/108 (40.74%), Postives = 68/108 (62.96%), Query Frame = 3
Query:  507 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            M  E    +T+  + G D+  +E+ E++E  ++ P  F+ LG   PKGVL+ GPPGTGKTLLA+A+A      F  +SGS+ V+ ++G G+  VR++F  A++ AP I
Sbjct:  141 MLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCI 247          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FTSH_SALTI (Cell division protease ftsH OS=Salmonella typhi GN=ftsH PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.607e-17
Identity = 44/108 (40.74%), Postives = 68/108 (62.96%), Query Frame = 3
Query:  507 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            M  E    +T+  + G D+  +E+ E++E  ++ P  F+ LG   PKGVL+ GPPGTGKTLLA+A+A      F  +SGS+ V+ ++G G+  VR++F  A++ AP I
Sbjct:  141 MLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCI 247          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FTSH_ECOLI (Cell division protease ftsH OS=Escherichia coli (strain K12) GN=ftsH PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.607e-17
Identity = 44/108 (40.74%), Postives = 68/108 (62.96%), Query Frame = 3
Query:  507 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            M  E    +T+  + G D+  +E+ E++E  ++ P  F+ LG   PKGVL+ GPPGTGKTLLA+A+A      F  +SGS+ V+ ++G G+  VR++F  A++ AP I
Sbjct:  141 MLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCI 247          
The following BLAST results are available for this feature:
BLAST of CX069560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 366
Match NameE-valueIdentityDescription
FTSH_BUCBP2.761e-1742.42Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH_BUCAI2.761e-1742.00Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH_BACSU2.761e-1746.32Cell division protease ftsH homolog OS=Bacillus su... [more]
FTSH1_ORYSJ2.761e-1744.04Cell division protease ftsH homolog 1, chloroplast... [more]
RCA1_YEAST3.607e-1747.37Mitochondrial respiratory chain complexes assembly... [more]
KATL1_DANRE3.607e-1747.17Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
FTSH_SHIFL3.607e-1740.74Cell division protease ftsH OS=Shigella flexneri G... [more]
FTSH_SALTY3.607e-1740.74Cell division protease ftsH OS=Salmonella typhimur... [more]
FTSH_SALTI3.607e-1740.74Cell division protease ftsH OS=Salmonella typhi GN... [more]
FTSH_ECOLI3.607e-1740.74Cell division protease ftsH OS=Escherichia coli (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11C09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11C09-F17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069560 ID=CX069560; Name=CX069560; organism=Citrus sinensis; type=EST; length=832bp
GAGACTTGATCCGAAAGACAATTAGATTCGAACAAATCGAACTCGTTCAC
TCGGAAAGAATGGCCGCTGTAGGAATCGAAACGAAGCAGCCGGAATCGGC
GGCGCCAGAGGAGGTGTGTGCGGCGAAAGGAGCATCGAAACAAGGAGAGG
GATTGAGGCAATACTACCTCCAACACATTCACGAACTCCAGCTCCAAGTC
CGTCAAAAAACCCACAATCTCAATCGCCTCGAAGCCCAGCGTAACGAACT
CAATTCTAGAGTGCGGATGCTTAAAGAAGAATTACAGCTTCTTCAAGAGC
CTGGATCCTATGTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATAAGGTT
CTTGTTAAGGTTCATCCTGAGGGGAAATATGTTGTTGATATTGATAAAAG
TATTGATATAACCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAATG
ACAGCTATGTTCTTCATTTGATCCTGCCAAGCAAAGTAGATCCCCTGGTC
AACCTTATGAAGGTTGAAAAGGTCCCTGATTCTACATATGACATGATTGG
TGGCCTTGATCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCTA
TCAAACATCCCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGGT
GTATTGCTATATGGACCACCTGGTACTGGCAAAACACTGTTGGCTAGAGC
TGTGGCTCATCATACTGATTGTACTTTCATCAGGGTTTCTGGTTCTGAAT
TAGTCCAGAAATACATTGGAGAAGGCTCCAGAATGGTTAGAGAACTTTTT
GTTATGGCAAGGGAACATGCTCCGTCTATCAT
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