CX069560

Overview
NameCX069560
Unique NameCX069560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FTSH_ECO57 (Cell division protease ftsH OS=Escherichia coli O157:H7 GN=ftsH PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.607e-17
Identity = 44/108 (40.74%), Postives = 68/108 (62.96%), Query Frame = 3
Query:  507 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            M  E    +T+  + G D+  +E+ E++E  ++ P  F+ LG   PKGVL+ GPPGTGKTLLA+A+A      F  +SGS+ V+ ++G G+  VR++F  A++ AP I
Sbjct:  141 MLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCI 247          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FTSH_CYACA (Cell division protease ftsH homolog OS=Cyanidium caldarium GN=ftsH PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.607e-17
Identity = 42/98 (42.86%), Postives = 65/98 (66.33%), Query Frame = 3
Query:  537 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            ++ + G+++  +E++E++   +K    F ++G   PKGVLL GPPGTGKTLLA+A+A      F  +SGSE V+ ++G G+  VR+LF  A+E AP I
Sbjct:  170 FEDVAGIEEAKEELQEIVAF-LKDSRKFTNVGATIPKGVLLVGPPGTGKTLLAKAIAGEASAPFFSISGSEFVEMFVGVGASRVRDLFKKAKEKAPCI 266          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FTSH_CAPAN (Cell division protease ftsH homolog, chloroplastic (Fragment) OS=Capsicum annuum GN=FTSH PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.607e-17
Identity = 48/109 (44.04%), Postives = 69/109 (63.30%), Query Frame = 3
Query:  510 KVEKVPDS--TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            K ++VP++  T+  + G DQ   E++EV++  +K+P+ + +LG   PKG LL GPPGTGKTLLARAVA      F   + SE V+ ++G G+  VR LF  A+  AP I
Sbjct:  218 KFQEVPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRHLFENAKSKAPCI 325          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FTSH1_HAEIN (Cell division protease ftsH homolog 1 OS=Haemophilus influenzae GN=ftsH-A PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.607e-17
Identity = 40/99 (40.40%), Postives = 67/99 (67.68%), Query Frame = 3
Query:  534 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            T+  + G D+  +E+ E+++  ++ P  F++LG   PKG+L+ GPPGTGKTLLARA+A      F  +SGS+ V+ ++G G+  VR++F  A+++AP +
Sbjct:  149 TFADVAGCDEAKEEVGEIVDF-LRDPNKFQNLGGKIPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCL 246          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: ATAD1_RAT (ATPase family AAA domain-containing protein 1 OS=Rattus norvegicus GN=Atad1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.607e-17
Identity = 46/100 (46.00%), Postives = 62/100 (62.00%), Query Frame = 3
Query:  534 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            T+  I GLD  I ++K+ + LPIK   LFE+  + QP KGVLLYGPPG GKTL+A+A A    C FI +  S L  K+ GE  ++   +F +A +  PSI
Sbjct:   89 TWSDIAGLDDVITDLKDTVILPIKKKHLFENSRLLQPPKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSI 188          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: ATAD1_MOUSE (ATPase family AAA domain-containing protein 1 OS=Mus musculus GN=Atad1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.607e-17
Identity = 46/100 (46.00%), Postives = 62/100 (62.00%), Query Frame = 3
Query:  534 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            T+  I GLD  I ++K+ + LPIK   LFE+  + QP KGVLLYGPPG GKTL+A+A A    C FI +  S L  K+ GE  ++   +F +A +  PSI
Sbjct:   89 TWSDIAGLDDVITDLKDTVILPIKKKHLFENSRLLQPPKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSI 188          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: ATAD1_HUMAN (ATPase family AAA domain-containing protein 1 OS=Homo sapiens GN=ATAD1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.607e-17
Identity = 46/100 (46.00%), Postives = 62/100 (62.00%), Query Frame = 3
Query:  534 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            T+  I GLD  I ++K+ + LPIK   LFE+  + QP KGVLLYGPPG GKTL+A+A A    C FI +  S L  K+ GE  ++   +F +A +  PSI
Sbjct:   89 TWSDIAGLDDVITDLKDTVILPIKKKHLFENSRLLQPPKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSI 188          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: SPAST_ANOGA (Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5)

HSP 1 Score: 88.5817 bits (218), Expect = 4.710e-17
Identity = 46/95 (48.42%), Postives = 61/95 (64.21%), Query Frame = 3
Query:  546 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            I G +   + ++E++ LP   PELF  L     KG+LL+GPPG GKTLLARAVA     TF  +S + L  KY+G+G ++VR LF +ARE  PSI
Sbjct:  505 IAGQEVAKQALQEMVILPSVRPELFTGLR-TPAKGLLLFGPPGNGKTLLARAVATECSATFFSISAATLTSKYVGDGEKLVRALFAVARELQPSI 598          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FTSH1_ARATH (Cell division protease ftsH homolog 1, chloroplastic OS=Arabidopsis thaliana GN=FTSH1 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 4.710e-17
Identity = 47/109 (43.12%), Postives = 70/109 (64.22%), Query Frame = 3
Query:  510 KVEKVPDS--TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            K ++VP++  ++  + G DQ   E++EV++  +K+P+ + +LG   PKG LL GPPGTGKTLLARAVA      F   + SE V+ ++G G+  VR+LF  A+  AP I
Sbjct:  250 KFQEVPETGVSFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCI 357          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: AFG32_MOUSE (AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.710e-17
Identity = 44/101 (43.56%), Postives = 65/101 (64.36%), Query Frame = 3
Query:  528 DSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            D  +  + G ++   EI E +   +K+P+ ++ LG   PKG +L GPPGTGKTLLA+A A   +  FI VSGSE ++ ++G G   VR+LF +AR++AP I
Sbjct:  303 DVKFKDVAGCEEAKLEIMEFVNF-LKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCI 402          
The following BLAST results are available for this feature:
BLAST of CX069560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 366
Match NameE-valueIdentityDescription
FTSH_ECO573.607e-1740.74Cell division protease ftsH OS=Escherichia coli O1... [more]
FTSH_CYACA3.607e-1742.86Cell division protease ftsH homolog OS=Cyanidium c... [more]
FTSH_CAPAN3.607e-1744.04Cell division protease ftsH homolog, chloroplastic... [more]
FTSH1_HAEIN3.607e-1740.40Cell division protease ftsH homolog 1 OS=Haemophil... [more]
ATAD1_RAT3.607e-1746.00ATPase family AAA domain-containing protein 1 OS=R... [more]
ATAD1_MOUSE3.607e-1746.00ATPase family AAA domain-containing protein 1 OS=M... [more]
ATAD1_HUMAN3.607e-1746.00ATPase family AAA domain-containing protein 1 OS=H... [more]
SPAST_ANOGA4.710e-1748.42Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5[more]
FTSH1_ARATH4.710e-1743.12Cell division protease ftsH homolog 1, chloroplast... [more]
AFG32_MOUSE4.710e-1743.56AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11C09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11C09-F17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069560 ID=CX069560; Name=CX069560; organism=Citrus sinensis; type=EST; length=832bp
GAGACTTGATCCGAAAGACAATTAGATTCGAACAAATCGAACTCGTTCAC
TCGGAAAGAATGGCCGCTGTAGGAATCGAAACGAAGCAGCCGGAATCGGC
GGCGCCAGAGGAGGTGTGTGCGGCGAAAGGAGCATCGAAACAAGGAGAGG
GATTGAGGCAATACTACCTCCAACACATTCACGAACTCCAGCTCCAAGTC
CGTCAAAAAACCCACAATCTCAATCGCCTCGAAGCCCAGCGTAACGAACT
CAATTCTAGAGTGCGGATGCTTAAAGAAGAATTACAGCTTCTTCAAGAGC
CTGGATCCTATGTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATAAGGTT
CTTGTTAAGGTTCATCCTGAGGGGAAATATGTTGTTGATATTGATAAAAG
TATTGATATAACCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAATG
ACAGCTATGTTCTTCATTTGATCCTGCCAAGCAAAGTAGATCCCCTGGTC
AACCTTATGAAGGTTGAAAAGGTCCCTGATTCTACATATGACATGATTGG
TGGCCTTGATCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCTA
TCAAACATCCCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGGT
GTATTGCTATATGGACCACCTGGTACTGGCAAAACACTGTTGGCTAGAGC
TGTGGCTCATCATACTGATTGTACTTTCATCAGGGTTTCTGGTTCTGAAT
TAGTCCAGAAATACATTGGAGAAGGCTCCAGAATGGTTAGAGAACTTTTT
GTTATGGCAAGGGAACATGCTCCGTCTATCAT
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