CX069560

Overview
NameCX069560
Unique NameCX069560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: AFG32_HUMAN (AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 4.710e-17
Identity = 44/101 (43.56%), Postives = 65/101 (64.36%), Query Frame = 3
Query:  528 DSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            D  +  + G ++   EI E +   +K+P+ ++ LG   PKG +L GPPGTGKTLLA+A A   +  FI VSGSE ++ ++G G   VR+LF +AR++AP I
Sbjct:  304 DVKFKDVAGCEEAKLEIMEFVNF-LKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCI 403          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: AFG32_BOVIN (AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.710e-17
Identity = 44/101 (43.56%), Postives = 65/101 (64.36%), Query Frame = 3
Query:  528 DSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            D  +  + G ++   EI E +   +K+P+ ++ LG   PKG +L GPPGTGKTLLA+A A   +  FI VSGSE ++ ++G G   VR+LF +AR++AP I
Sbjct:  305 DVKFKDVAGCEEAKLEIMEFVNF-LKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCI 404          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: YKX4_SCHPO (Uncharacterized AAA domain-containing protein C328.04 OS=Schizosaccharomyces pombe GN=SPAC328.04 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.152e-17
Identity = 44/99 (44.44%), Postives = 66/99 (66.67%), Query Frame = 3
Query:  537 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            +D I GL+     +KE +  P   P+LF+  G+ +P +G+LL+GPPGTGKT+LARAVA  +   F  +S S L  K++GE  ++VR LF +A++ +PSI
Sbjct:  458 WDDISGLEFAKHSLKEAVVYPFLRPDLFQ--GLREPARGMLLFGPPGTGKTMLARAVATESRSVFFSISASSLTSKFLGESEKLVRALFTLAKKLSPSI 554          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: TBP7_CAEBR (TAT-binding homolog 7 OS=Caenorhabditis briggsae GN=lex-1 PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 6.152e-17
Identity = 44/103 (42.72%), Postives = 62/103 (60.19%), Query Frame = 3
Query:  537 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHH-----TDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            +D +GGL   I+ +KEV+  P+ +PE+F    I  PKGV+ YGPPGTGKTL+ARA+A+          F    G++ + K++GE  R +R LF  A    PSI
Sbjct:  404 FDQVGGLSHHIQSLKEVVLFPMLYPEVFAKFKINPPKGVVFYGPPGTGKTLVARALANECRRGANKVAFFMRKGADCLSKWVGESERQLRLLFDQAYAMRPSI 506          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FTSH3_ARATH (Cell division protease ftsH homolog 3, mitochondrial OS=Arabidopsis thaliana GN=FTSH3 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.152e-17
Identity = 44/95 (46.32%), Postives = 62/95 (65.26%), Query Frame = 3
Query:  546 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            + G D+  +EI E +   +K+P+ +E LG   PKG LL GPPGTGKTLLA+A A  +   F+ +SGS+ ++ ++G G   VR LF  AR+ APSI
Sbjct:  324 VAGCDEAKQEIMEFVHF-LKNPKKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRHLFQEARQAAPSI 417          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: ATAD2_PONAB (ATPase family AAA domain-containing protein 2 OS=Pongo abelii GN=ATAD2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.152e-17
Identity = 43/103 (41.75%), Postives = 62/103 (60.19%), Query Frame = 3
Query:  537 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-----CTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            +D +GGL   I  +KE++  P+ +PE+FE   I  P+G L YGPPGTGKTL+ARA+A+          F    G++ + K++GE  R +R LF  A +  PSI
Sbjct:  256 FDSVGGLSNHIAALKEMVVFPLLYPEVFEKFKIQPPRGCLFYGPPGTGKTLVARALANECSQGDKRVAFFMRKGADCLSKWVGESERQLRLLFDQAYQMRPSI 358          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: ATAD2_HUMAN (ATPase family AAA domain-containing protein 2 OS=Homo sapiens GN=ATAD2 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.152e-17
Identity = 43/103 (41.75%), Postives = 62/103 (60.19%), Query Frame = 3
Query:  537 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-----CTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            +D +GGL   I  +KE++  P+ +PE+FE   I  P+G L YGPPGTGKTL+ARA+A+          F    G++ + K++GE  R +R LF  A +  PSI
Sbjct:  425 FDSVGGLSNHIAALKEMVVFPLLYPEVFEKFKIQPPRGCLFYGPPGTGKTLVARALANECSQGDKRVAFFMRKGADCLSKWVGESERQLRLLFDQAYQMRPSI 527          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: AFG3_YEAST (Mitochondrial respiratory chain complexes assembly protein AFG3 OS=Saccharomyces cerevisiae GN=AFG3 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.152e-17
Identity = 44/99 (44.44%), Postives = 63/99 (63.64%), Query Frame = 3
Query:  534 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            ++  + G D+  +EI E +   +K+P  +  LG   P+G +L GPPGTGKTLLA+A A   +  F+ VSGSE V+ ++G G+  VR+LF  AR  APSI
Sbjct:  286 SFKNVAGCDEAKQEIMEFVHF-LKNPGKYTKLGAKIPRGAILSGPPGTGKTLLAKATAGEANVPFLSVSGSEFVEMFVGVGASRVRDLFTQARSMAPSI 383          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: YHI5_SCHPO (Uncharacterized AAA domain-containing protein P22H7.05c OS=Schizosaccharomyces pombe GN=SPBP22H7.05c PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.035e-17
Identity = 48/119 (40.34%), Postives = 71/119 (59.66%), Query Frame = 3
Query:  489 DPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA-----HHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            DP  N   ++      ++ IGGL+  I ++KE++ LP+ +PE+F  L I  P+GVL +GPPGTGKTL+AR +A      +   +F    GS+ + K++GE  R +R LF  AR   PSI
Sbjct:  361 DPFANRENLD------FNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRGVLFHGPPGTGKTLMARVLAANCSTKNQKISFFLRKGSDCLSKWVGEAERQLRLLFEEARRVQPSI 473          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: KTNA1_STRPU (Katanin p60 ATPase-containing subunit OS=Strongylocentrotus purpuratus GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.035e-17
Identity = 49/106 (46.23%), Postives = 69/106 (65.09%), Query Frame = 3
Query:  513 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPS 827
            V++ P+  +  I GL +  + ++E + LP+  P+ F+  GI +P KGVL+ GPPGTGKT+LA+AVA     TF  VS + L  KY GE  ++VR LF MAR +APS
Sbjct:  225 VQRNPNVHWADIAGLTEAKRLLEEAVVLPLWMPDYFK--GIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSASLTSKYHGESEKLVRLLFEMARFYAPS 328          
The following BLAST results are available for this feature:
BLAST of CX069560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 366
Match NameE-valueIdentityDescription
AFG32_HUMAN4.710e-1743.56AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1... [more]
AFG32_BOVIN4.710e-1743.56AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 S... [more]
YKX4_SCHPO6.152e-1744.44Uncharacterized AAA domain-containing protein C328... [more]
TBP7_CAEBR6.152e-1742.72TAT-binding homolog 7 OS=Caenorhabditis briggsae G... [more]
FTSH3_ARATH6.152e-1746.32Cell division protease ftsH homolog 3, mitochondri... [more]
ATAD2_PONAB6.152e-1741.75ATPase family AAA domain-containing protein 2 OS=P... [more]
ATAD2_HUMAN6.152e-1741.75ATPase family AAA domain-containing protein 2 OS=H... [more]
AFG3_YEAST6.152e-1744.44Mitochondrial respiratory chain complexes assembly... [more]
YHI5_SCHPO8.035e-1740.34Uncharacterized AAA domain-containing protein P22H... [more]
KTNA1_STRPU8.035e-1746.23Katanin p60 ATPase-containing subunit OS=Strongylo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11C09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11C09-F17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069560 ID=CX069560; Name=CX069560; organism=Citrus sinensis; type=EST; length=832bp
GAGACTTGATCCGAAAGACAATTAGATTCGAACAAATCGAACTCGTTCAC
TCGGAAAGAATGGCCGCTGTAGGAATCGAAACGAAGCAGCCGGAATCGGC
GGCGCCAGAGGAGGTGTGTGCGGCGAAAGGAGCATCGAAACAAGGAGAGG
GATTGAGGCAATACTACCTCCAACACATTCACGAACTCCAGCTCCAAGTC
CGTCAAAAAACCCACAATCTCAATCGCCTCGAAGCCCAGCGTAACGAACT
CAATTCTAGAGTGCGGATGCTTAAAGAAGAATTACAGCTTCTTCAAGAGC
CTGGATCCTATGTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATAAGGTT
CTTGTTAAGGTTCATCCTGAGGGGAAATATGTTGTTGATATTGATAAAAG
TATTGATATAACCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAATG
ACAGCTATGTTCTTCATTTGATCCTGCCAAGCAAAGTAGATCCCCTGGTC
AACCTTATGAAGGTTGAAAAGGTCCCTGATTCTACATATGACATGATTGG
TGGCCTTGATCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCTA
TCAAACATCCCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGGT
GTATTGCTATATGGACCACCTGGTACTGGCAAAACACTGTTGGCTAGAGC
TGTGGCTCATCATACTGATTGTACTTTCATCAGGGTTTCTGGTTCTGAAT
TAGTCCAGAAATACATTGGAGAAGGCTCCAGAATGGTTAGAGAACTTTTT
GTTATGGCAAGGGAACATGCTCCGTCTATCAT
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