CX069560
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FTSH8_ORYSJ (Cell division protease ftsH homolog 8, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH8 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 8.035e-17 Identity = 44/95 (46.32%), Postives = 62/95 (65.26%), Query Frame = 3 Query: 546 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830 + G D+ +EI E + +K+P+ +E LG PKG LL GPPGTGKTLLA+A A + F+ +SGS+ ++ ++G G VR LF AR+ APSI Sbjct: 337 VAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSI 430
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: VPS4B_PONAB (Vacuolar protein sorting-associated protein 4B OS=Pongo abelii GN=VPS4B PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.049e-16 Identity = 47/104 (45.19%), Postives = 69/104 (66.35%), Query Frame = 3 Query: 525 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTD-CTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830 P+ + + GL+ + +KE + LPIK P LF G P +G+LL+GPPGTGK+ LA+AVA + TF +S S+LV K++GE ++V+ LF +ARE+ PSI Sbjct: 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT--GKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSI 230
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: VPS4B_MOUSE (Vacuolar protein sorting-associated protein 4B OS=Mus musculus GN=Vps4b PE=1 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 1.049e-16 Identity = 47/104 (45.19%), Postives = 69/104 (66.35%), Query Frame = 3 Query: 525 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTD-CTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830 P+ + + GL+ + +KE + LPIK P LF G P +G+LL+GPPGTGK+ LA+AVA + TF +S S+LV K++GE ++V+ LF +ARE+ PSI Sbjct: 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT--GKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSI 230
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: VPS4B_HUMAN (Vacuolar protein sorting-associated protein 4B OS=Homo sapiens GN=VPS4B PE=1 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 1.049e-16 Identity = 47/104 (45.19%), Postives = 69/104 (66.35%), Query Frame = 3 Query: 525 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTD-CTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830 P+ + + GL+ + +KE + LPIK P LF G P +G+LL+GPPGTGK+ LA+AVA + TF +S S+LV K++GE ++V+ LF +ARE+ PSI Sbjct: 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT--GKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSI 230
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: VPS4B_BOVIN (Vacuolar protein sorting-associated protein 4B OS=Bos taurus GN=VPS4B PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.049e-16 Identity = 47/104 (45.19%), Postives = 69/104 (66.35%), Query Frame = 3 Query: 525 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTD-CTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830 P+ + + GL+ + +KE + LPIK P LF G P +G+LL+GPPGTGK+ LA+AVA + TF +S S+LV K++GE ++V+ LF +ARE+ PSI Sbjct: 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT--GKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSI 230
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: SUR2_SCHPO (Protein sur2 OS=Schizosaccharomyces pombe GN=sur2 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.049e-16 Identity = 44/96 (45.83%), Postives = 61/96 (63.54%), Query Frame = 3 Query: 546 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830 I GLD +KE + P PELF+ G+ +P +G+LL+GPPGTGKT+LARAVA TF +S S L KY+G+ ++VR LF +A+ S+ Sbjct: 381 IAGLDDAKNSLKEAVIYPFLRPELFQ--GLREPVQGMLLFGPPGTGKTMLARAVATEAKATFFSISASSLTSKYLGDSEKLVRALFEVAKRQTCSV 474
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FTSH4_ORYSJ (Cell division protease ftsH homolog 4, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH4 PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.049e-16 Identity = 46/109 (42.20%), Postives = 69/109 (63.30%), Query Frame = 3 Query: 510 KVEKVPDST--YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830 +V+ + DS + + G+D+ E++E++ ++ P+ F LG PKGVLL GPPGTGKT+LARAVA F SGSE + ++G G+R VR+LF A++ +P I Sbjct: 211 EVQPIMDSKTKFSDVKGVDEAKAELEEIVHY-LRDPKRFTHLGGKLPKGVLLVGPPGTGKTMLARAVAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFAAAKKRSPCI 318
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: ATD2B_HUMAN (ATPase family AAA domain-containing protein 2B OS=Homo sapiens GN=ATAD2B PE=1 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 1.049e-16 Identity = 47/116 (40.52%), Postives = 67/116 (57.76%), Query Frame = 3 Query: 498 VNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-----CTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830 V+ M ++K +D IGGL I +KE++ P+ +PE+FE I P+G L YGPPGTGKTL+ARA+A+ F G++ + K++GE R +R LF A PSI Sbjct: 388 VDPMNIDK--SVRFDSIGGLSHHIHALKEMVVFPLLYPEIFEKFKIQPPRGCLFYGPPGTGKTLVARALANECSQGDKKVAFFMRKGADCLSKWVGESERQLRLLFDQAYLMRPSI 501
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FTSH_LACLA (Cell division protease ftsH homolog OS=Lactococcus lactis subsp. lactis GN=ftsH PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.370e-16 Identity = 43/95 (45.26%), Postives = 65/95 (68.42%), Query Frame = 3 Query: 546 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830 + G +++ +E+ EV++ +K+P+ + LG P GVLL GPPGTGKTLLA+AVA F +SGS+ V+ ++G G+ VR+LF A++ APSI Sbjct: 195 VAGSEEEKQELVEVVDF-LKNPKKYHDLGARIPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFENAKKTAPSI 288
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: ATAD2_MOUSE (ATPase family AAA domain-containing protein 2 OS=Mus musculus GN=Atad2 PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.370e-16 Identity = 42/103 (40.78%), Postives = 62/103 (60.19%), Query Frame = 3 Query: 537 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-----CTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830 +D +GGL I +KE++ P+ +PE+FE I P+G L YGPPGTGKTL+ARA+A+ F G++ + K++GE R +R LF A + P+I Sbjct: 80 FDSVGGLSSHIAALKEMVVFPLLYPEVFEKFKIQPPRGCLFYGPPGTGKTLVARALANECSRGDKRVAFFMRKGADCLSKWVGESERQLRLLFDQAYQMRPAI 182 The following BLAST results are available for this feature:
BLAST of CX069560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 366
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069560 ID=CX069560; Name=CX069560; organism=Citrus sinensis; type=EST; length=832bpback to top |