CX069560

Overview
NameCX069560
Unique NameCX069560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FTSH8_ORYSJ (Cell division protease ftsH homolog 8, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH8 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.035e-17
Identity = 44/95 (46.32%), Postives = 62/95 (65.26%), Query Frame = 3
Query:  546 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            + G D+  +EI E +   +K+P+ +E LG   PKG LL GPPGTGKTLLA+A A  +   F+ +SGS+ ++ ++G G   VR LF  AR+ APSI
Sbjct:  337 VAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSI 430          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: VPS4B_PONAB (Vacuolar protein sorting-associated protein 4B OS=Pongo abelii GN=VPS4B PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.049e-16
Identity = 47/104 (45.19%), Postives = 69/104 (66.35%), Query Frame = 3
Query:  525 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTD-CTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            P+  +  + GL+   + +KE + LPIK P LF   G   P +G+LL+GPPGTGK+ LA+AVA   +  TF  +S S+LV K++GE  ++V+ LF +ARE+ PSI
Sbjct:  129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT--GKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSI 230          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: VPS4B_MOUSE (Vacuolar protein sorting-associated protein 4B OS=Mus musculus GN=Vps4b PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.049e-16
Identity = 47/104 (45.19%), Postives = 69/104 (66.35%), Query Frame = 3
Query:  525 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTD-CTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            P+  +  + GL+   + +KE + LPIK P LF   G   P +G+LL+GPPGTGK+ LA+AVA   +  TF  +S S+LV K++GE  ++V+ LF +ARE+ PSI
Sbjct:  129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT--GKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSI 230          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: VPS4B_HUMAN (Vacuolar protein sorting-associated protein 4B OS=Homo sapiens GN=VPS4B PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.049e-16
Identity = 47/104 (45.19%), Postives = 69/104 (66.35%), Query Frame = 3
Query:  525 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTD-CTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            P+  +  + GL+   + +KE + LPIK P LF   G   P +G+LL+GPPGTGK+ LA+AVA   +  TF  +S S+LV K++GE  ++V+ LF +ARE+ PSI
Sbjct:  129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT--GKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSI 230          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: VPS4B_BOVIN (Vacuolar protein sorting-associated protein 4B OS=Bos taurus GN=VPS4B PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.049e-16
Identity = 47/104 (45.19%), Postives = 69/104 (66.35%), Query Frame = 3
Query:  525 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTD-CTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            P+  +  + GL+   + +KE + LPIK P LF   G   P +G+LL+GPPGTGK+ LA+AVA   +  TF  +S S+LV K++GE  ++V+ LF +ARE+ PSI
Sbjct:  129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT--GKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSI 230          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: SUR2_SCHPO (Protein sur2 OS=Schizosaccharomyces pombe GN=sur2 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.049e-16
Identity = 44/96 (45.83%), Postives = 61/96 (63.54%), Query Frame = 3
Query:  546 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            I GLD     +KE +  P   PELF+  G+ +P +G+LL+GPPGTGKT+LARAVA     TF  +S S L  KY+G+  ++VR LF +A+    S+
Sbjct:  381 IAGLDDAKNSLKEAVIYPFLRPELFQ--GLREPVQGMLLFGPPGTGKTMLARAVATEAKATFFSISASSLTSKYLGDSEKLVRALFEVAKRQTCSV 474          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FTSH4_ORYSJ (Cell division protease ftsH homolog 4, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH4 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.049e-16
Identity = 46/109 (42.20%), Postives = 69/109 (63.30%), Query Frame = 3
Query:  510 KVEKVPDST--YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            +V+ + DS   +  + G+D+   E++E++   ++ P+ F  LG   PKGVLL GPPGTGKT+LARAVA      F   SGSE  + ++G G+R VR+LF  A++ +P I
Sbjct:  211 EVQPIMDSKTKFSDVKGVDEAKAELEEIVHY-LRDPKRFTHLGGKLPKGVLLVGPPGTGKTMLARAVAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFAAAKKRSPCI 318          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: ATD2B_HUMAN (ATPase family AAA domain-containing protein 2B OS=Homo sapiens GN=ATAD2B PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.049e-16
Identity = 47/116 (40.52%), Postives = 67/116 (57.76%), Query Frame = 3
Query:  498 VNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-----CTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            V+ M ++K     +D IGGL   I  +KE++  P+ +PE+FE   I  P+G L YGPPGTGKTL+ARA+A+          F    G++ + K++GE  R +R LF  A    PSI
Sbjct:  388 VDPMNIDK--SVRFDSIGGLSHHIHALKEMVVFPLLYPEIFEKFKIQPPRGCLFYGPPGTGKTLVARALANECSQGDKKVAFFMRKGADCLSKWVGESERQLRLLFDQAYLMRPSI 501          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FTSH_LACLA (Cell division protease ftsH homolog OS=Lactococcus lactis subsp. lactis GN=ftsH PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.370e-16
Identity = 43/95 (45.26%), Postives = 65/95 (68.42%), Query Frame = 3
Query:  546 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            + G +++ +E+ EV++  +K+P+ +  LG   P GVLL GPPGTGKTLLA+AVA      F  +SGS+ V+ ++G G+  VR+LF  A++ APSI
Sbjct:  195 VAGSEEEKQELVEVVDF-LKNPKKYHDLGARIPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFENAKKTAPSI 288          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: ATAD2_MOUSE (ATPase family AAA domain-containing protein 2 OS=Mus musculus GN=Atad2 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.370e-16
Identity = 42/103 (40.78%), Postives = 62/103 (60.19%), Query Frame = 3
Query:  537 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-----CTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            +D +GGL   I  +KE++  P+ +PE+FE   I  P+G L YGPPGTGKTL+ARA+A+          F    G++ + K++GE  R +R LF  A +  P+I
Sbjct:   80 FDSVGGLSSHIAALKEMVVFPLLYPEVFEKFKIQPPRGCLFYGPPGTGKTLVARALANECSRGDKRVAFFMRKGADCLSKWVGESERQLRLLFDQAYQMRPAI 182          
The following BLAST results are available for this feature:
BLAST of CX069560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 366
Match NameE-valueIdentityDescription
FTSH8_ORYSJ8.035e-1746.32Cell division protease ftsH homolog 8, mitochondri... [more]
VPS4B_PONAB1.049e-1645.19Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4B_MOUSE1.049e-1645.19Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4B_HUMAN1.049e-1645.19Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4B_BOVIN1.049e-1645.19Vacuolar protein sorting-associated protein 4B OS=... [more]
SUR2_SCHPO1.049e-1645.83Protein sur2 OS=Schizosaccharomyces pombe GN=sur2 ... [more]
FTSH4_ORYSJ1.049e-1642.20Cell division protease ftsH homolog 4, mitochondri... [more]
ATD2B_HUMAN1.049e-1640.52ATPase family AAA domain-containing protein 2B OS=... [more]
FTSH_LACLA1.370e-1645.26Cell division protease ftsH homolog OS=Lactococcus... [more]
ATAD2_MOUSE1.370e-1640.78ATPase family AAA domain-containing protein 2 OS=M... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11C09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11C09-F17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069560 ID=CX069560; Name=CX069560; organism=Citrus sinensis; type=EST; length=832bp
GAGACTTGATCCGAAAGACAATTAGATTCGAACAAATCGAACTCGTTCAC
TCGGAAAGAATGGCCGCTGTAGGAATCGAAACGAAGCAGCCGGAATCGGC
GGCGCCAGAGGAGGTGTGTGCGGCGAAAGGAGCATCGAAACAAGGAGAGG
GATTGAGGCAATACTACCTCCAACACATTCACGAACTCCAGCTCCAAGTC
CGTCAAAAAACCCACAATCTCAATCGCCTCGAAGCCCAGCGTAACGAACT
CAATTCTAGAGTGCGGATGCTTAAAGAAGAATTACAGCTTCTTCAAGAGC
CTGGATCCTATGTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATAAGGTT
CTTGTTAAGGTTCATCCTGAGGGGAAATATGTTGTTGATATTGATAAAAG
TATTGATATAACCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAATG
ACAGCTATGTTCTTCATTTGATCCTGCCAAGCAAAGTAGATCCCCTGGTC
AACCTTATGAAGGTTGAAAAGGTCCCTGATTCTACATATGACATGATTGG
TGGCCTTGATCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCTA
TCAAACATCCCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGGT
GTATTGCTATATGGACCACCTGGTACTGGCAAAACACTGTTGGCTAGAGC
TGTGGCTCATCATACTGATTGTACTTTCATCAGGGTTTCTGGTTCTGAAT
TAGTCCAGAAATACATTGGAGAAGGCTCCAGAATGGTTAGAGAACTTTTT
GTTATGGCAAGGGAACATGCTCCGTCTATCAT
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