CX069560

Overview
NameCX069560
Unique NameCX069560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PEX1_DICDI (Peroxisome biogenesis factor 1 OS=Dictyostelium discoideum GN=pex1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.790e-16
Identity = 45/95 (47.37%), Postives = 57/95 (60.00%), Query Frame = 3
Query:  546 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            IGGLD     +KE IE P K+P+LF+S  +    G+LLYGP G GKTLLA A+A      FI V G EL+ KYIG   + VR++F  A    P +
Sbjct:  868 IGGLDSVRAMLKETIEWPTKYPKLFQSSPLRLRSGILLYGPTGCGKTLLASAIAGECGLNFISVKGPELLNKYIGSSEQGVRDVFSRASSAKPCV 962          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FTSH_STRR6 (Cell division protease ftsH homolog OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=ftsH PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.790e-16
Identity = 44/95 (46.32%), Postives = 63/95 (66.32%), Query Frame = 3
Query:  546 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            + G +++ +E+ EV+E  +K P+ F  LG   P GVLL GPPGTGKTLLA+AVA      F  +SGS+ V+ ++G G+  VR LF  A++ AP+I
Sbjct:  189 VAGAEEEKQELVEVVEF-LKDPKRFTKLGARIPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAAPAI 282          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FTSH_STRPN (Cell division protease ftsH homolog OS=Streptococcus pneumoniae GN=ftsH PE=3 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.790e-16
Identity = 44/95 (46.32%), Postives = 63/95 (66.32%), Query Frame = 3
Query:  546 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            + G +++ +E+ EV+E  +K P+ F  LG   P GVLL GPPGTGKTLLA+AVA      F  +SGS+ V+ ++G G+  VR LF  A++ AP+I
Sbjct:  189 VAGAEEEKQELVEVVEF-LKDPKRFTKLGARIPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAAPAI 282          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FTSH3_ORYSJ (Cell division protease ftsH homolog 3, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH3 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.790e-16
Identity = 43/95 (45.26%), Postives = 62/95 (65.26%), Query Frame = 3
Query:  546 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            + G D+  +EI E +   +K+P+ +E LG   PKG LL GPPGTGKTLLA+A A  +   F+ +SGS+ ++ ++G G   VR LF  AR+ +PSI
Sbjct:  322 VAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCSPSI 415          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FTSH_MYCPU (Cell division protease ftsH homolog OS=Mycoplasma pulmonis GN=ftsH PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.338e-16
Identity = 43/101 (42.57%), Postives = 67/101 (66.34%), Query Frame = 3
Query:  528 DSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            D  +  I G  + I+E++E+++  +K+P+ + + G   PKG+LL GPPGTGKTLLA+A A   +  F  +S S  V+ Y+G G++ VRE+F  AR+ AP+I
Sbjct:  208 DKKFTDIAGNKEPIEEVQELVDY-LKNPKKYAAAGARFPKGILLGGPPGTGKTLLAKATAGEANVPFFFISASSFVELYVGLGAKRVREMFKEARKLAPAI 307          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FTSH5_ORYSJ (Cell division protease ftsH homolog 5, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH5 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.338e-16
Identity = 42/101 (41.58%), Postives = 65/101 (64.36%), Query Frame = 3
Query:  528 DSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            ++ +  + G+D+   E++E++   ++ P+ F  LG   PKGVLL GPPGTGKT+LARA+A      F   SGSE  + ++G G+R VR+LF  A++ +P I
Sbjct:  226 NTKFSDVKGVDEAKAELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFAAAKKRSPCI 325          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: YME1_CAEEL (Protein YME1 homolog OS=Caenorhabditis elegans GN=ymel-1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.988e-16
Identity = 43/92 (46.74%), Postives = 60/92 (65.22%), Query Frame = 3
Query:  555 LDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            +D+   E++E+++  +K PE +  LG   PKGVLL GPPGTGKTLLARA+A      F   +GSE  +  +G+G+R VR+LF  A+  AP I
Sbjct:  206 MDEAKLEVEEIVDY-LKDPEKYSRLGGRLPKGVLLVGPPGTGKTLLARAIAGEAQVPFFHTAGSEFDEVLVGQGARRVRDLFDKAKARAPCI 296          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FTSH9_ORYSJ (Cell division protease ftsH homolog 9, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH9 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.802e-16
Identity = 45/99 (45.45%), Postives = 62/99 (62.63%), Query Frame = 3
Query:  534 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            T+  + G D   KE++EV+E  +K+P  F  LG   PKG+LL G PGTGKTLLA+A+A      F   +GSE  + ++G G+R VR LF  A++ AP I
Sbjct:  326 TFKDVKGCDDAKKELEEVVEY-LKNPSKFTRLGGKLPKGILLTGSPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCI 423          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: KTNA1_RAT (Katanin p60 ATPase-containing subunit A1 OS=Rattus norvegicus GN=Katna1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.883e-16
Identity = 49/106 (46.23%), Postives = 67/106 (63.21%), Query Frame = 3
Query:  513 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPS 827
            + + P+  +  I  L +  K ++E + LP+  PE F+  GI +P KGVL+ GPPGTGKTLLA+AVA     TF  VS S L  KY GE  ++VR LF MAR ++P+
Sbjct:  200 ISQNPNVRWYDIADLVEAKKLLQEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPA 303          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: KTNA1_MOUSE (Katanin p60 ATPase-containing subunit A1 OS=Mus musculus GN=Katna1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.883e-16
Identity = 49/106 (46.23%), Postives = 67/106 (63.21%), Query Frame = 3
Query:  513 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPS 827
            + + P+  +  I  L +  K ++E + LP+  PE F+  GI +P KGVL+ GPPGTGKTLLA+AVA     TF  VS S L  KY GE  ++VR LF MAR ++P+
Sbjct:  200 ISQNPNVRWYDIADLVEAKKLLQEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPA 303          
The following BLAST results are available for this feature:
BLAST of CX069560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 366
Match NameE-valueIdentityDescription
PEX1_DICDI1.790e-1647.37Peroxisome biogenesis factor 1 OS=Dictyostelium di... [more]
FTSH_STRR61.790e-1646.32Cell division protease ftsH homolog OS=Streptococc... [more]
FTSH_STRPN1.790e-1646.32Cell division protease ftsH homolog OS=Streptococc... [more]
FTSH3_ORYSJ1.790e-1645.26Cell division protease ftsH homolog 3, mitochondri... [more]
FTSH_MYCPU2.338e-1642.57Cell division protease ftsH homolog OS=Mycoplasma ... [more]
FTSH5_ORYSJ2.338e-1641.58Cell division protease ftsH homolog 5, mitochondri... [more]
YME1_CAEEL3.988e-1646.74Protein YME1 homolog OS=Caenorhabditis elegans GN=... [more]
FTSH9_ORYSJ6.802e-1645.45Cell division protease ftsH homolog 9, chloroplast... [more]
KTNA1_RAT8.883e-1646.23Katanin p60 ATPase-containing subunit A1 OS=Rattus... [more]
KTNA1_MOUSE8.883e-1646.23Katanin p60 ATPase-containing subunit A1 OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11C09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11C09-F17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069560 ID=CX069560; Name=CX069560; organism=Citrus sinensis; type=EST; length=832bp
GAGACTTGATCCGAAAGACAATTAGATTCGAACAAATCGAACTCGTTCAC
TCGGAAAGAATGGCCGCTGTAGGAATCGAAACGAAGCAGCCGGAATCGGC
GGCGCCAGAGGAGGTGTGTGCGGCGAAAGGAGCATCGAAACAAGGAGAGG
GATTGAGGCAATACTACCTCCAACACATTCACGAACTCCAGCTCCAAGTC
CGTCAAAAAACCCACAATCTCAATCGCCTCGAAGCCCAGCGTAACGAACT
CAATTCTAGAGTGCGGATGCTTAAAGAAGAATTACAGCTTCTTCAAGAGC
CTGGATCCTATGTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATAAGGTT
CTTGTTAAGGTTCATCCTGAGGGGAAATATGTTGTTGATATTGATAAAAG
TATTGATATAACCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAATG
ACAGCTATGTTCTTCATTTGATCCTGCCAAGCAAAGTAGATCCCCTGGTC
AACCTTATGAAGGTTGAAAAGGTCCCTGATTCTACATATGACATGATTGG
TGGCCTTGATCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCTA
TCAAACATCCCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGGT
GTATTGCTATATGGACCACCTGGTACTGGCAAAACACTGTTGGCTAGAGC
TGTGGCTCATCATACTGATTGTACTTTCATCAGGGTTTCTGGTTCTGAAT
TAGTCCAGAAATACATTGGAGAAGGCTCCAGAATGGTTAGAGAACTTTTT
GTTATGGCAAGGGAACATGCTCCGTCTATCAT
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