CX069560

Overview
NameCX069560
Unique NameCX069560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FTSHA_ARATH (Cell division protease ftsH homolog 10, mitochondrial OS=Arabidopsis thaliana GN=FTSH10 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.883e-16
Identity = 42/95 (44.21%), Postives = 62/95 (65.26%), Query Frame = 3
Query:  546 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            + G ++  +EI E +   +++P+ +E LG   PKG LL GPPGTGKTLLA+A A  +   F+ +SGS+ ++ ++G G   VR LF  AR+ APSI
Sbjct:  329 VAGCEEAKQEIMEFVHF-LQNPKKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESAVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSI 422          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FTSH4_ARATH (Cell division protease ftsH homolog 4, mitochondrial OS=Arabidopsis thaliana GN=FTSH4 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.160e-15
Identity = 42/95 (44.21%), Postives = 62/95 (65.26%), Query Frame = 3
Query:  546 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            + G+D+   E++E++   ++ P+ F  LG   PKGVLL GPPGTGKT+LARA+A      F   SGSE  + ++G G+R VR+LF  A++ +P I
Sbjct:  229 VKGVDEAKAELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKCSPCI 322          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: ATD1B_DANRE (ATPase family AAA domain-containing protein 1-B OS=Danio rerio GN=atad1b PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.160e-15
Identity = 45/100 (45.00%), Postives = 61/100 (61.00%), Query Frame = 3
Query:  534 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            T+  I GLD+ I E+K+ + LPI+   LFE   + QP KGVLLYGPPG GKTL+A+A A      FI +  S L  K+ GE  ++   +F +A +  PSI
Sbjct:   93 TWHDIAGLDEVITELKDTVILPIQKRHLFEGSRLLQPPKGVLLYGPPGCGKTLIAKATAKEAGFRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSI 192          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: YME1_SCHMA (Protein YME1 homolog OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.515e-15
Identity = 40/101 (39.60%), Postives = 64/101 (63.37%), Query Frame = 3
Query:  528 DSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            D ++  + G D+  KE+ +V+E  +++PE F  +G   PKGVLL GPPG GKTLLA+AV+      F+  SGS   +  +G G+  +R+LF  A++++P +
Sbjct:  162 DVSFSDVQGCDEVKKELVDVVEF-LRNPEKFNQIGAKLPKGVLLVGPPGVGKTLLAKAVSGEAQVPFLYASGSSFDEVLVGLGASRIRQLFTTAKQNSPCL 261          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: SPAST_CAEEL (Probable spastin homolog spas-1 OS=Caenorhabditis elegans GN=spas-1 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.515e-15
Identity = 47/119 (39.50%), Postives = 71/119 (59.66%), Query Frame = 3
Query:  486 VDPLVNLMKVEKVPDST---YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            VD ++    +++V D+T    D + G       ++E + LP  +P LF+  G+ QP KG+LL+GPPG GKTLLA+AVA  +   F  +S S L  K++G+  + +R LF +AR   PSI
Sbjct:  218 VDKVIGERLLDEVLDNTGVRMDDVAGCHSAKAALEEAVILPALNPNLFK--GLRQPVKGILLFGPPGNGKTLLAKAVAGESKQMFFNISASSLTSKWVGDSEKTIRGLFQIARNAQPSI 334          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: MSP1_CAEEL (Mitochondrial sorting homolog OS=Caenorhabditis elegans GN=mspn-1 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.515e-15
Identity = 40/98 (40.82%), Postives = 62/98 (63.27%), Query Frame = 3
Query:  537 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            +D IGG ++ + E+K+ I LP++      S  ++ P+G+LLYGPPG GKTLLA+AVA    C FI +  S L  K+ GE  ++   +F +A++  P+I
Sbjct:   82 WDEIGGCEELVAELKDRIILPLRFASQSGSHLLSPPRGILLYGPPGCGKTLLAKAVARAAGCRFINLQVSNLTDKWYGESQKLAAAVFSVAQKFQPTI 179          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FTSH_MYCPN (Cell division protease ftsH homolog OS=Mycoplasma pneumoniae GN=ftsH PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.515e-15
Identity = 41/98 (41.84%), Postives = 63/98 (64.29%), Query Frame = 3
Query:  537 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            +D I GL ++  E+ E+++  +K+P  +  +G   P+GV+LYGPPGTGKTLLA+AVA      F + +GS      +G G++ VR+LF  A++ AP I
Sbjct:  227 FDNIAGLQEEKHELLEIVDY-LKNPLKYAQMGARSPRGVILYGPPGTGKTLLAKAVAGEAGVPFFQSTGSGFEDMLVGVGAKRVRDLFNKAKKAAPCI 323          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: SPAST_CAEBR (Probable spastin homolog spas-1 OS=Caenorhabditis briggsae GN=spas-1 PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.979e-15
Identity = 47/119 (39.50%), Postives = 69/119 (57.98%), Query Frame = 3
Query:  486 VDPLVNLMKVEKVPDST---YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            VD  +    ++++ DST    D + G       ++E + LP  +P LF   G+ QP KG+LL+GPPG GKTLLA+AVA  +   F  +S S L  K++G+  + +R LF +AR   PSI
Sbjct:  248 VDKAIGERLLDEILDSTGVRMDDVAGCHSAKATLEEAVILPALNPNLFS--GLRQPVKGILLFGPPGNGKTLLAKAVAGESKQMFFNISASSLTSKWVGDSEKTIRGLFQIARNGQPSI 364          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FTSHB_ARATH (Cell division protease ftsH homolog 11, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=FTSH11 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.979e-15
Identity = 44/99 (44.44%), Postives = 62/99 (62.63%), Query Frame = 3
Query:  534 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            T+  + G D   +E++EV+E  +K+P  F  LG   PKG+LL G PGTGKTLLA+A+A      F   +GSE  + ++G G+R VR LF  A++ AP I
Sbjct:  360 TFKDVKGCDDAKQELEEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCI 457          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: SPA5L_XENTR (Spermatogenesis-associated protein 5-like protein 1 OS=Xenopus tropicalis GN=spata5l1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.376e-15
Identity = 35/87 (40.23%), Postives = 57/87 (65.52%), Query Frame = 3
Query:  537 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVREL 797
            ++ IGGL+    ++++ IE P+K+PE F  +G+  PKGVLLYGPPG  KT L +AVA    C+F  +S ++L   Y+G+  + + ++
Sbjct:  456 WEHIGGLEDIKHKLRQSIEWPMKYPEAFSRMGLTPPKGVLLYGPPGCAKTTLVKAVATSCHCSFFSISAADLFSPYVGDSEKTLAQV 542          

HSP 2 Score: 77.411 bits (189), Expect = 1.086e-13
Identity = 40/103 (38.83%), Postives = 57/103 (55.34%), Query Frame = 3
Query:  519 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPS 827
            K+ ++    +  +D     +KE+I +P+ +PE    LG+  PKGVLL GPPG GKTLL +AVA       I +SG  +     GE    +R++F  ARE A S
Sbjct:  184 KLQEAPQLKVAAMDDTCASLKEIIHMPLHYPETMHKLGLPCPKGVLLIGPPGVGKTLLVKAVAREVGAYVIGLSGPAIHGSRPGESEENLRKIFEKAREAACS 286          
The following BLAST results are available for this feature:
BLAST of CX069560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 366
Match NameE-valueIdentityDescription
FTSHA_ARATH8.883e-1644.21Cell division protease ftsH homolog 10, mitochondr... [more]
FTSH4_ARATH1.160e-1544.21Cell division protease ftsH homolog 4, mitochondri... [more]
ATD1B_DANRE1.160e-1545.00ATPase family AAA domain-containing protein 1-B OS... [more]
YME1_SCHMA1.515e-1539.60Protein YME1 homolog OS=Schistosoma mansoni PE=2 S... [more]
SPAST_CAEEL1.515e-1539.50Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
MSP1_CAEEL1.515e-1540.82Mitochondrial sorting homolog OS=Caenorhabditis el... [more]
FTSH_MYCPN1.515e-1541.84Cell division protease ftsH homolog OS=Mycoplasma ... [more]
SPAST_CAEBR1.979e-1539.50Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
FTSHB_ARATH1.979e-1544.44Cell division protease ftsH homolog 11, chloroplas... [more]
SPA5L_XENTR3.376e-1540.23Spermatogenesis-associated protein 5-like protein ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11C09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11C09-F17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069560 ID=CX069560; Name=CX069560; organism=Citrus sinensis; type=EST; length=832bp
GAGACTTGATCCGAAAGACAATTAGATTCGAACAAATCGAACTCGTTCAC
TCGGAAAGAATGGCCGCTGTAGGAATCGAAACGAAGCAGCCGGAATCGGC
GGCGCCAGAGGAGGTGTGTGCGGCGAAAGGAGCATCGAAACAAGGAGAGG
GATTGAGGCAATACTACCTCCAACACATTCACGAACTCCAGCTCCAAGTC
CGTCAAAAAACCCACAATCTCAATCGCCTCGAAGCCCAGCGTAACGAACT
CAATTCTAGAGTGCGGATGCTTAAAGAAGAATTACAGCTTCTTCAAGAGC
CTGGATCCTATGTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATAAGGTT
CTTGTTAAGGTTCATCCTGAGGGGAAATATGTTGTTGATATTGATAAAAG
TATTGATATAACCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAATG
ACAGCTATGTTCTTCATTTGATCCTGCCAAGCAAAGTAGATCCCCTGGTC
AACCTTATGAAGGTTGAAAAGGTCCCTGATTCTACATATGACATGATTGG
TGGCCTTGATCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCTA
TCAAACATCCCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGGT
GTATTGCTATATGGACCACCTGGTACTGGCAAAACACTGTTGGCTAGAGC
TGTGGCTCATCATACTGATTGTACTTTCATCAGGGTTTCTGGTTCTGAAT
TAGTCCAGAAATACATTGGAGAAGGCTCCAGAATGGTTAGAGAACTTTTT
GTTATGGCAAGGGAACATGCTCCGTCTATCAT
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