CX069560

Overview
NameCX069560
Unique NameCX069560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FIGL1_DROME (Fidgetin-like protein 1 OS=Drosophila melanogaster GN=CG3326 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.409e-15
Identity = 37/98 (37.76%), Postives = 61/98 (62.24%), Query Frame = 3
Query:  537 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            ++ I GL+       E I +P++ P+LF  +    P+GVLL+GPPGTGKTL+A+++A      F  ++ S L  K++G+  ++V+ LF +A  H P+I
Sbjct:  249 WEDIAGLESAKSTFLEAIIMPLRRPDLFTGVR-CPPRGVLLFGPPGTGKTLIAKSIASQAKAKFFSINPSSLTSKWVGDAEKLVKTLFAVAAAHQPAI 345          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: MSP1_YEAST (Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.520e-15
Identity = 40/100 (40.00%), Postives = 63/100 (63.00%), Query Frame = 3
Query:  534 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQ-PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            T+  IGGLD  I ++ E +  P+  PE++ +  + Q P GVLLYGPPG GKT+LA+A+A  +   FI +  S ++ K+ GE +++V  +F +A +  P I
Sbjct:   89 TFQDIGGLDPLISDLHESVIYPLMMPEVYSNSPLLQAPSGVLLYGPPGCGKTMLAKALAKESGANFISIRMSSIMDKWYGESNKIVDAMFSLANKLQPCI 188          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PEX1_PICPA (Peroxisome biosynthesis protein PAS1 OS=Pichia pastoris GN=PEX1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.822e-15
Identity = 46/108 (42.59%), Postives = 61/108 (56.48%), Query Frame = 3
Query:  507 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            +K++K  D  +D IGGL      + E +E P K+  +F S  +    G+LLYG PG GKTLLA AVA      FI + G E++ KYIG   + VRELF  A+   P I
Sbjct:  789 VKLQK-SDVRWDDIGGLRDAKSILLETLEWPTKYAPIFSSCPLRLRSGILLYGYPGCGKTLLASAVAAQCGLNFISIKGPEILNKYIGPSEQSVRELFERAQAAKPCI 895          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FTSH_MYCGE (Cell division protease ftsH homolog OS=Mycoplasma genitalium GN=ftsH PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.822e-15
Identity = 40/95 (42.11%), Postives = 61/95 (64.21%), Query Frame = 3
Query:  546 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            I GL ++  E+ E+++  +K+P  +  +G   P+GV+LYGPPGTGKTLLA+AVA      F + +GS      +G G++ VR+LF  A++ AP I
Sbjct:  233 IAGLQEEKHELLEIVDY-LKNPLKYAQMGARSPRGVILYGPPGTGKTLLAKAVAGEAGVPFFQSTGSGFEDMLVGVGAKRVRDLFNKAKKAAPCI 326          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: ATD1A_DANRE (ATPase family AAA domain-containing protein 1-A OS=Danio rerio GN=atad1a PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.283e-14
Identity = 41/100 (41.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:  534 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            T+  + GLD+ I E+++ + LP +   LF    + QP KGVLLYGPPG GKTL+A+A A  + C FI +  S L  K+ GE  ++   +F +A +  P I
Sbjct:   92 TWRDVAGLDEIISEMQDTVILPFQKRHLFSGSKLLQPPKGVLLYGPPGCGKTLIAKATAKASGCRFINLQASTLTDKWYGESQKLTAAVFSLAVKIQPCI 191          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PRS2_METJA (Putative 26S protease regulatory subunit homolog MJ1494 OS=Methanocaldococcus jannaschii GN=MJ1494 PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.675e-14
Identity = 41/90 (45.56%), Postives = 61/90 (67.78%), Query Frame = 3
Query:  561 QQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            ++ K+   +I   +++P+LF   G   PK VL YGPPGTGKTL+ARA+A  T+ +FI V   EL+ +++G+ S+M+REL+  A E AP I
Sbjct:  130 EEAKKKCRIIMKYLENPKLF---GEWAPKNVLFYGPPGTGKTLMARALATETNSSFILVKAPELIGEHVGDASKMIRELYQRASESAPCI 216          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: MEI1_CAEEL (Meiotic spindle formation protein mei-1 OS=Caenorhabditis elegans GN=mei-1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.188e-14
Identity = 48/128 (37.50%), Postives = 76/128 (59.38%), Query Frame = 3
Query:  450 DSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            D+Y++  +  +      N M ++       D+IG  D + + + E + LP+  PE F+  G+  P K ++L GPPGTGKTL+ARA+A  +  TF  VS ++L  K+ G+  ++VR LF +AR +APSI
Sbjct:  171 DAYIVQAVRGTMATNTENTMSLD-------DIIGMHDVK-QVLHEAVTLPLLVPEFFQ--GLRSPWKAMVLAGPPGTGKTLIARAIASESSSTFFTVSSTDLSSKWRGDSEKIVRLLFELARFYAPSI 288          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FIGN_DANRE (Fidgetin OS=Danio rerio GN=fign PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.366e-14
Identity = 39/95 (41.05%), Postives = 59/95 (62.11%), Query Frame = 3
Query:  546 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            I GL+     IK+ +  PI  P++F  L    P+ +LL+GP GTG+TLL R +A      F+ +SGS LV K++GEG ++V+  F++AR   PS+
Sbjct:  466 IAGLEMAKATIKDEVLWPILRPDMFSGLATL-PRSILLFGPQGTGRTLLGRCMASQLGAAFLLLSGSALVTKWLGEGEKIVQASFLIARCRQPSV 559          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: SPAST_BRUMA (Probable spastin homolog Bm1_53365 OS=Brugia malayi GN=Bm1_53365 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.314e-14
Identity = 47/115 (40.87%), Postives = 69/115 (60.00%), Query Frame = 3
Query:  492 PLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCT-FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            PL+N  ++    D     I G +   + ++E + LP  +P LF   G+ QP +G+LL+GPPG GKTLLARAVA     T F+ VS + L  K++G+  ++VR LF +AR   P+I
Sbjct:  164 PLLN--EILNQDDVKMSDIIGAETAKRALEETVILPTVNPSLFS--GLRQPAQGILLFGPPGNGKTLLARAVAGECGSTMFLNVSAASLTSKWVGDAEKIVRALFQIARNGQPTI 274          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FIGN_MOUSE (Fidgetin OS=Mus musculus GN=Fign PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.314e-14
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 3
Query:  525 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            P   +  I GLD     IKE +  P+   + F  L  A P+ +LL+GP GTGKTLL R +A     TF +++GS LV K+IGE  +++   F++AR   PS+
Sbjct:  481 PPVDWSDIAGLDLVKAVIKEEVLWPVLRSDAFSGL-TALPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWIGEAEKIIHASFLVARCRQPSV 581          
The following BLAST results are available for this feature:
BLAST of CX069560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 366
Match NameE-valueIdentityDescription
FIGL1_DROME4.409e-1537.76Fidgetin-like protein 1 OS=Drosophila melanogaster... [more]
MSP1_YEAST7.520e-1540.00Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 P... [more]
PEX1_PICPA9.822e-1542.59Peroxisome biosynthesis protein PAS1 OS=Pichia pas... [more]
FTSH_MYCGE9.822e-1542.11Cell division protease ftsH homolog OS=Mycoplasma ... [more]
ATD1A_DANRE1.283e-1441.00ATPase family AAA domain-containing protein 1-A OS... [more]
PRS2_METJA1.675e-1445.56Putative 26S protease regulatory subunit homolog M... [more]
MEI1_CAEEL2.188e-1437.50Meiotic spindle formation protein mei-1 OS=Caenorh... [more]
FIGN_DANRE6.366e-1441.05Fidgetin OS=Danio rerio GN=fign PE=2 SV=1[more]
SPAST_BRUMA8.314e-1440.87Probable spastin homolog Bm1_53365 OS=Brugia malay... [more]
FIGN_MOUSE8.314e-1440.20Fidgetin OS=Mus musculus GN=Fign PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_11C09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11C09-F17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069560 ID=CX069560; Name=CX069560; organism=Citrus sinensis; type=EST; length=832bp
GAGACTTGATCCGAAAGACAATTAGATTCGAACAAATCGAACTCGTTCAC
TCGGAAAGAATGGCCGCTGTAGGAATCGAAACGAAGCAGCCGGAATCGGC
GGCGCCAGAGGAGGTGTGTGCGGCGAAAGGAGCATCGAAACAAGGAGAGG
GATTGAGGCAATACTACCTCCAACACATTCACGAACTCCAGCTCCAAGTC
CGTCAAAAAACCCACAATCTCAATCGCCTCGAAGCCCAGCGTAACGAACT
CAATTCTAGAGTGCGGATGCTTAAAGAAGAATTACAGCTTCTTCAAGAGC
CTGGATCCTATGTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATAAGGTT
CTTGTTAAGGTTCATCCTGAGGGGAAATATGTTGTTGATATTGATAAAAG
TATTGATATAACCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAATG
ACAGCTATGTTCTTCATTTGATCCTGCCAAGCAAAGTAGATCCCCTGGTC
AACCTTATGAAGGTTGAAAAGGTCCCTGATTCTACATATGACATGATTGG
TGGCCTTGATCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCTA
TCAAACATCCCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGGT
GTATTGCTATATGGACCACCTGGTACTGGCAAAACACTGTTGGCTAGAGC
TGTGGCTCATCATACTGATTGTACTTTCATCAGGGTTTCTGGTTCTGAAT
TAGTCCAGAAATACATTGGAGAAGGCTCCAGAATGGTTAGAGAACTTTTT
GTTATGGCAAGGGAACATGCTCCGTCTATCAT
back to top