CX069560

Overview
NameCX069560
Unique NameCX069560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: SPG7_RAT (Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.086e-13
Identity = 42/99 (42.42%), Postives = 58/99 (58.59%), Query Frame = 3
Query:  534 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            ++  + G+ +   E++E ++  +K PE F  LG   PKG LL GPPG GKTLLA+AVA      F+ ++G E V+   G G+  VR LF  AR  AP I
Sbjct:  307 SFQDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCI 404          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: SPG7_MOUSE (Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.086e-13
Identity = 42/99 (42.42%), Postives = 58/99 (58.59%), Query Frame = 3
Query:  534 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            ++  + G+ +   E++E ++  +K PE F  LG   PKG LL GPPG GKTLLA+AVA      F+ ++G E V+   G G+  VR LF  AR  AP I
Sbjct:  307 SFQDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCI 404          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: FIGN_HUMAN (Fidgetin OS=Homo sapiens GN=FIGN PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.086e-13
Identity = 40/102 (39.22%), Postives = 60/102 (58.82%), Query Frame = 3
Query:  525 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            P   ++ I GLD     IKE +  P+   + F  L  A P+ +LL+GP GTGKTLL R +A     TF +++GS LV K++GE  +++   F++AR   PS+
Sbjct:  481 PPVDWNDIAGLDLVKAVIKEEVLWPVLRSDAFSGL-TALPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAEKIIHASFLVARCRQPSV 581          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: SPG7_HUMAN (Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.418e-13
Identity = 42/95 (44.21%), Postives = 56/95 (58.95%), Query Frame = 3
Query:  546 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            + G+ +   E++E ++  +K PE F  LG   PKG LL GPPG GKTLLA+AVA      F+ ++G E V+   G G+  VR LF  AR  AP I
Sbjct:  311 VAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCI 404          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: NSF2_DROME (Vesicle-fusing ATPase 2 OS=Drosophila melanogaster GN=Nsf2 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 9.193e-13
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 3
Query:  546 IGGLDQQIKEI-KEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR-VSGSELVQKYIGEGSRMVRELFVMARE 815
            IGGLD++   I +      +  PEL E LGI   KG+LLYGPPGTGKTL+AR +    +    + V+G +++ KY+GE    +R LF  A E
Sbjct:  225 IGGLDKEFNAIFRRAFASRVFPPELVEQLGIKHVKGILLYGPPGTGKTLMARQIGTMLNAREPKIVNGPQILDKYVGESEANIRRLFAEAEE 316          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PEX1_SCHPO (Peroxisomal ATPase pex1 OS=Schizosaccharomyces pombe GN=pex1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.201e-12
Identity = 34/95 (35.79%), Postives = 58/95 (61.05%), Query Frame = 3
Query:  546 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            I G+ +  + ++++IE P+K+  +++   +  P G+LL+G PG GKT LA A++      FI + G EL+ KYIG+  + VR+LF  A+   P +
Sbjct:  608 IAGMQEAKEAVRDIIESPVKYSLIYKQCRLRLPTGILLFGYPGCGKTYLASAISSTFPVQFISIKGPELLDKYIGKSEQGVRDLFSRAQMAKPCV 702          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PEX1_YEAST (Peroxisomal ATPase PEX1 OS=Saccharomyces cerevisiae GN=PEX1 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.568e-12
Identity = 41/108 (37.96%), Postives = 58/108 (53.70%), Query Frame = 3
Query:  507 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            +K+ K  +  +  IG L      + E +E P K+  +F +  +    G+LLYG PG GKTLLA AVA      FI V G E++ K+IG   + +RELF  A+   P I
Sbjct:  686 VKLTKETNIKWGDIGALANAKDVLLETLEWPTKYEPIFVNCPLRLRSGILLYGYPGCGKTLLASAVAQQCGLNFISVKGPEILNKFIGASEQNIRELFERAQSVKPCI 793          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: NSF1_DROME (Vesicle-fusing ATPase 1 OS=Drosophila melanogaster GN=comt PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.048e-12
Identity = 40/92 (43.48%), Postives = 54/92 (58.70%), Query Frame = 3
Query:  546 IGGLDQQIKEI-KEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR-VSGSELVQKYIGEGSRMVRELFVMARE 815
            IGGLD++   I +      +  PEL E LG    KG+LLYGPPGTGKTL+AR +    +    + V+G +++ KY+GE    VR LF  A E
Sbjct:  220 IGGLDKEFNSIFRRAFASRVFPPELVEQLGCKHVKGILLYGPPGTGKTLMARQIGTMLNAREPKIVNGPQILDKYVGESEANVRRLFAEAEE 311          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: NSF_RAT (Vesicle-fusing ATPase OS=Rattus norvegicus GN=Nsf PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.493e-12
Identity = 40/101 (39.60%), Postives = 59/101 (58.42%), Query Frame = 3
Query:  525 PDSTYDM--IGGLDQQIKEI-KEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR-VSGSELVQKYIGEGSRMVRELFVMARE 815
            PD  ++   IGGLD++  +I +      +  PE+ E +G    KG+LLYGPPG GKTLLAR +    +    + V+G E++ KY+GE    +R+LF  A E
Sbjct:  211 PDWNFEKMGIGGLDKEFSDIFRRAFASRVFPPEIVEQMGCKHVKGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEE 311          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: NSF_PONAB (Vesicle-fusing ATPase OS=Pongo abelii GN=NSF PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.493e-12
Identity = 40/101 (39.60%), Postives = 59/101 (58.42%), Query Frame = 3
Query:  525 PDSTYDM--IGGLDQQIKEI-KEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR-VSGSELVQKYIGEGSRMVRELFVMARE 815
            PD  ++   IGGLD++  +I +      +  PE+ E +G    KG+LLYGPPG GKTLLAR +    +    + V+G E++ KY+GE    +R+LF  A E
Sbjct:  211 PDWNFEKMGIGGLDKEFSDIFRRAFASRVFPPEIVEQMGCKHVKGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEE 311          
The following BLAST results are available for this feature:
BLAST of CX069560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 366
Match NameE-valueIdentityDescription
SPG7_RAT1.086e-1342.42Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1[more]
SPG7_MOUSE1.086e-1342.42Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1[more]
FIGN_HUMAN1.086e-1339.22Fidgetin OS=Homo sapiens GN=FIGN PE=2 SV=2[more]
SPG7_HUMAN1.418e-1344.21Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2[more]
NSF2_DROME9.193e-1343.48Vesicle-fusing ATPase 2 OS=Drosophila melanogaster... [more]
PEX1_SCHPO1.201e-1235.79Peroxisomal ATPase pex1 OS=Schizosaccharomyces pom... [more]
PEX1_YEAST1.568e-1237.96Peroxisomal ATPase PEX1 OS=Saccharomyces cerevisia... [more]
NSF1_DROME2.048e-1243.48Vesicle-fusing ATPase 1 OS=Drosophila melanogaster... [more]
NSF_RAT3.493e-1239.60Vesicle-fusing ATPase OS=Rattus norvegicus GN=Nsf ... [more]
NSF_PONAB3.493e-1239.60Vesicle-fusing ATPase OS=Pongo abelii GN=NSF PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11C09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11C09-F17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069560 ID=CX069560; Name=CX069560; organism=Citrus sinensis; type=EST; length=832bp
GAGACTTGATCCGAAAGACAATTAGATTCGAACAAATCGAACTCGTTCAC
TCGGAAAGAATGGCCGCTGTAGGAATCGAAACGAAGCAGCCGGAATCGGC
GGCGCCAGAGGAGGTGTGTGCGGCGAAAGGAGCATCGAAACAAGGAGAGG
GATTGAGGCAATACTACCTCCAACACATTCACGAACTCCAGCTCCAAGTC
CGTCAAAAAACCCACAATCTCAATCGCCTCGAAGCCCAGCGTAACGAACT
CAATTCTAGAGTGCGGATGCTTAAAGAAGAATTACAGCTTCTTCAAGAGC
CTGGATCCTATGTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATAAGGTT
CTTGTTAAGGTTCATCCTGAGGGGAAATATGTTGTTGATATTGATAAAAG
TATTGATATAACCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAATG
ACAGCTATGTTCTTCATTTGATCCTGCCAAGCAAAGTAGATCCCCTGGTC
AACCTTATGAAGGTTGAAAAGGTCCCTGATTCTACATATGACATGATTGG
TGGCCTTGATCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCTA
TCAAACATCCCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGGT
GTATTGCTATATGGACCACCTGGTACTGGCAAAACACTGTTGGCTAGAGC
TGTGGCTCATCATACTGATTGTACTTTCATCAGGGTTTCTGGTTCTGAAT
TAGTCCAGAAATACATTGGAGAAGGCTCCAGAATGGTTAGAGAACTTTTT
GTTATGGCAAGGGAACATGCTCCGTCTATCAT
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