CX069559

Overview
NameCX069559
Unique NameCX069559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: FTSH_TREPA (Cell division protease ftsH homolog OS=Treponema pallidum GN=ftsH PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.827e-47
Identity = 100/222 (45.05%), Postives = 145/222 (65.32%), Query Frame = -3
Query:  210 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRK 875
            P+GVLL GPPGTGKTLLARAVA      F R+SGS+ ++ ++G G+  VR+LF  ARE AP IIF+DE+D+IG +R+ +   N + E  +T+ +LL ++DGF+ +  + +L ATNR D+LD ALLRPGR DR++    P+ + R  IL+IH++ + L   +DLK +A    G SGA+L  V  EA + A+R  R  V + D + AV K M    +K+  +R+
Sbjct:  174 PRGVLLVGPPGTGKTLLARAVAGEASVPFFRISGSDFIEMFVGIGASRVRDLFKQAREKAPGIIFIDELDAIGKSRLNAIHSNDERE--QTLNQLLVEMDGFDNTTGLILLAATNRPDVLDPALLRPGRFDRQVCVDRPDLKGREAILRIHAQNVKLAPEVDLKAVARITGGYSGADLANVVNEAALLAVRSGRAQVIETDLDEAVEKTMIGLQKKSRVIRE 393          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: FTSH4_SYNY3 (Cell division protease ftsH homolog 4 OS=Synechocystis sp. (strain PCC 6803) GN=slr1604 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.998e-47
Identity = 94/217 (43.32%), Postives = 141/217 (64.98%), Query Frame = -3
Query:  225 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKN 875
            PKGVLL GPPGTGKTLLA+AVA      F  +SGSE V+ ++G G+  VR+LF  A+ +AP I+F+DEID++G  R  +G G G+ E ++T+ +LL ++DGFE +  I ++ ATNR D+LD AL+RPGR DR++    P+   R +IL +H+R   L + +DL KIA +  G +GA+L  +  EA + A R     ++ ++   A+ +V+    +KN
Sbjct:  194 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFEQAKANAPCIVFIDEIDAVGRQR-GAGLGGGNDEREQTLNQLLTEMDGFEGNTGIIIVAATNRPDVLDSALMRPGRFDRQVVVDRPDYAGRREILNVHARGKTLSQDVDLDKIARRTPGFTGADLSNLLNEAAILAARRNLTEISMDEVNDAIDRVLAGPEKKN 409          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: FTSH_BACPF (Cell division protease ftsH homolog OS=Bacillus pseudofirmus GN=ftsH PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.899e-46
Identity = 98/217 (45.16%), Postives = 142/217 (65.44%), Query Frame = -3
Query:  225 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKN 875
            PKGVLL GPPGTGKTLLARAVA      F  +SGS+ V+ ++G G+  VR+LF  A+++AP IIF+DEID++G  R  +G G G  E ++T+ +LL ++DGF A+  I ++ ATNR DILD ALLRPGR DR+I+   P+   R ++LK+H+R   L   ++LK IA +  G SGA+L+ +  EA + A R     ++    E A+ +V+    +K+
Sbjct:  199 PKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQR-GAGLGGGHDEREQTLNQLLVEMDGFSANEGIIIIAATNRADILDPALLRPGRFDRQIQVNRPDVNGREEVLKVHARNKPLNDDVNLKTIATRTPGFSGADLENLLNEAALVAARHDHTKISMIHIEEAIDRVIAGPAKKS 414          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: FTSH8_ARATH (Cell division protease ftsH homolog 8, chloroplastic OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.480e-46
Identity = 93/210 (44.29%), Postives = 140/210 (66.67%), Query Frame = -3
Query:  246 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVM 875
            PKGVLL GPPGTGKTLLA+A+A      F  +SGSE V+ ++G G+  VR+LF  A+E+AP I+F+DEID++G  R  +G G G+ E ++T+ +LL ++DGFE +  + V+ ATNR DILD ALLRPGR DR++    P+ + R DILK+HS       G+ L+ IA +  G SGA+L  +  EA + A R  +  ++ ++ + ++ +++
Sbjct:  253 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQR-GTGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHSGNKKFESGVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGKTAISSKEIDDSIDRIV 461          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: FTSH_CYAME (Cell division protease ftsH homolog OS=Cyanidioschyzon merolae GN=ftsH PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.240e-46
Identity = 91/210 (43.33%), Postives = 143/210 (68.10%), Query Frame = -3
Query:  246 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVM 875
            PKGVLL GPPGTGKTLLA+A+A      F  +SGSE V+ ++G G+  VR+LF  A+++AP ++F+DEID++G  R  +G G G+ E ++T+ +LL ++DGFE +  + V+ ATNR+D+LD ALLRPGR DR+I    P+ +SR+ ILK+H+ +  L   + L+ +A +  G +GA+L  +  EA + A+R     +T ++ + A+ +V+
Sbjct:  187 PKGVLLVGPPGTGKTLLAKAIAGEASVPFFSISGSEFVEMFVGVGASRVRDLFKKAKQNAPCLVFIDEIDAVGRQR-GAGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVIAATNRVDVLDAALLRPGRFDRQIMVSMPDVKSRIAILKVHANQKKLHPQVSLEAVARRTAGFAGADLANLLNEAAILAVRRGLKQITWKEIDDAIDRVI 395          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: FTSH_PORPU (Cell division protease ftsH homolog OS=Porphyra purpurea GN=ftsH PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 7.217e-46
Identity = 91/210 (43.33%), Postives = 139/210 (66.19%), Query Frame = -3
Query:  246 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVM 875
            PKGVLL GPPGTGKTLLA+A+A      F  +SGSE V+ ++G G+  VR+LF  A+++AP I+F+DEID++G  R  +G G G+ E ++T+ +LL ++DGFE +  + V+ ATNR DILD ALLRPGR DR++    P+   RL IL++H++   +   + L+ IA +  G SGA+L  +  EA +   R R+  +T  + + ++ +V+
Sbjct:  206 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCIVFIDEIDAVGRQR-GTGVGGGNDEREQTLNQLLTEMDGFEGNTGVIVIAATNRADILDSALLRPGRFDRQVSVDVPDFRGRLAILEVHAKNKKMESKVSLETIARRTPGFSGADLANLLNEAAILTARRRKSAMTMSEIDTSIDRVV 414          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: FSTH_PORYE (Cell division protease ftsH homolog OS=Porphyra yezoensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 7.217e-46
Identity = 91/210 (43.33%), Postives = 140/210 (66.67%), Query Frame = -3
Query:  246 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVM 875
            PKGVLL GPPGTGKTLLA+A+A      F  +SGSE V+ ++G G+  VR+LF  A+++AP I+F+DEID++G  R  +G G G+ E ++T+ +LL ++DGFE +  + V+ ATNR DILD ALLRPGR DR++    P+ + RL IL++H++   +   + L+ IA +  G SGA+L  +  EA +   R R+  +T  + + ++ +V+
Sbjct:  206 PKGVLLVGPPGTGKTLLAKAIAGEASVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCIVFIDEIDAVGRQR-GTGVGGGNDEREQTLNQLLTEMDGFEGNTGVIVIAATNRADILDSALLRPGRFDRQVSVDVPDFKGRLAILEVHAKNKKMEPKVSLETIARRTPGFSGADLANLLNEAAILTARRRKNAMTMSEIDTSIDRVV 414          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: FTSH_SALTY (Cell division protease ftsH OS=Salmonella typhimurium GN=ftsH PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 9.426e-46
Identity = 99/225 (44.00%), Postives = 142/225 (63.11%), Query Frame = -3
Query:  201 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 875
            PKGVL+ GPPGTGKTLLA+A+A      F  +SGS+ V+ ++G G+  VR++F  A++ AP IIF+DEID++G  R  +G G G  E ++T+ ++L ++DGFE +  I V+ ATNR D+LD ALLRPGR DR++    P+   R  ILK+H RR+ L   ID   IA    G SGA+L  +  EA +FA R  +  V+  +FE A  K+M     ++M + +  K
Sbjct:  185 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQR-GAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLATDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQK 408          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: FTSH_SALTI (Cell division protease ftsH OS=Salmonella typhi GN=ftsH PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 9.426e-46
Identity = 99/225 (44.00%), Postives = 142/225 (63.11%), Query Frame = -3
Query:  201 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 875
            PKGVL+ GPPGTGKTLLA+A+A      F  +SGS+ V+ ++G G+  VR++F  A++ AP IIF+DEID++G  R  +G G G  E ++T+ ++L ++DGFE +  I V+ ATNR D+LD ALLRPGR DR++    P+   R  ILK+H RR+ L   ID   IA    G SGA+L  +  EA +FA R  +  V+  +FE A  K+M     ++M + +  K
Sbjct:  185 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQR-GAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLATDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQK 408          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: FTSH_SHIFL (Cell division protease ftsH OS=Shigella flexneri GN=ftsH PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.231e-45
Identity = 99/225 (44.00%), Postives = 142/225 (63.11%), Query Frame = -3
Query:  201 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 875
            PKGVL+ GPPGTGKTLLA+A+A      F  +SGS+ V+ ++G G+  VR++F  A++ AP IIF+DEID++G  R  +G G G  E ++T+ ++L ++DGFE +  I V+ ATNR D+LD ALLRPGR DR++    P+   R  ILK+H RR+ L   ID   IA    G SGA+L  +  EA +FA R  +  V+  +FE A  K+M     ++M + +  K
Sbjct:  185 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQR-GAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQK 408          
The following BLAST results are available for this feature:
BLAST of CX069559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 389
Match NameE-valueIdentityDescription
FTSH_TREPA3.827e-4745.05Cell division protease ftsH homolog OS=Treponema p... [more]
FTSH4_SYNY34.998e-4743.32Cell division protease ftsH homolog 4 OS=Synechocy... [more]
FTSH_BACPF1.899e-4645.16Cell division protease ftsH homolog OS=Bacillus ps... [more]
FTSH8_ARATH2.480e-4644.29Cell division protease ftsH homolog 8, chloroplast... [more]
FTSH_CYAME3.240e-4643.33Cell division protease ftsH homolog OS=Cyanidiosch... [more]
FTSH_PORPU7.217e-4643.33Cell division protease ftsH homolog OS=Porphyra pu... [more]
FSTH_PORYE7.217e-4643.33Cell division protease ftsH homolog OS=Porphyra ye... [more]
FTSH_SALTY9.426e-4644.00Cell division protease ftsH OS=Salmonella typhimur... [more]
FTSH_SALTI9.426e-4644.00Cell division protease ftsH OS=Salmonella typhi GN... [more]
FTSH_SHIFL1.231e-4544.00Cell division protease ftsH OS=Shigella flexneri G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11C09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11C09-F17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069559 ID=CX069559; Name=CX069559; organism=Citrus sinensis; type=EST; length=907bp
CTTGCATGCGAATTTAAATTTAGATAAAATAGATTGCAAATTTGTTTATC
ATAAGAGGCTAGAGCGCAAGAAAAGACAACAGTCAGGCTAAAAGGGCCTA
TCGTGCAAATGTCCCAGAACACGAGTGAGTGCCGTTAAGGACTACTTGAA
TCTTGCTCAGAAAATAAGCAAATACACAGCACAGCACATGGAAATGATTA
CTTCCACAACTTCCGCAAGGACATGTTCTTCTCTGTTTCTTTCTTCATGA
CCTTGGCCACTGCCATCTCAAAATCTTCCTGTGTTACATGGATCCTTCTC
TCTCTTAGAGCAAACATACCGGCTTCTGTGCACACAGCCTTAAGCTCCGC
ACCAGATGCACCATTCATCTTCTCGGCAATCTTCTTCAAATCAATGCCAC
GCATTAAATTCATTCTTCTTGAATGAATTTTTAGGATATCAAGACGAGAC
TCTTCATTAGGATTTGGAAATTCAATCTTTCTGTCAATTCGTCCTGGCCT
GAGAAGAGCTTGATCGAGAATATCAATTCGATTTGTCGCCATGAGAACCT
TAATTTTGTTTGATGCTTCAAATCCATCAAGCTGGTTGAGCAGCTCCAGC
ATAGTCCTCTGCACCTCACTGTCACCATTTCCGCTGCCAGATTCCATTCG
GGCAGATCCGATACTGTCAATTTCATCCATAAAAATGATAGACGGAGCAT
GTTCCCTTGCCATAACAAAAAGTTCTCTAACCATTCTGGAGCCTTCTCCA
ATGTATTTCTGGACTAATTCAGAACCAGAAACCCTGATGAAAGTACAATC
AGTATGATGAGCCACAGCTCTAGCCAACAGTGTTTTGCCAGTACCAGGTG
GTCCATATAGCAATACACCCTTNGGGTTGAGCTATTCCAAGAGACTCGAA
CAATTCG
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