CX069559

Overview
NameCX069559
Unique NameCX069559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: AFG32_MOUSE (AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.778e-44
Identity = 98/224 (43.75%), Postives = 142/224 (63.39%), Query Frame = -3
Query:  231 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGN--GDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKM----NGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV---MKKETE 875
            PKG +L GPPGTGKTLLA+A A   +  FI VSGSE ++ ++G G   VR+LF +AR++AP I+F+DEID++G  R   G GN  G SE + T+ +LL ++DGF  +  + +L  TNR DILD ALLRPGR DR+I    P+ + R  I K+H R + L   ++  K+A K+     G SGA++  VC EA + A R     + ++ FE A+ +V   ++K+T+
Sbjct:  340 PKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKR---GRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSALEKDKLARKLASLTPGFSGADVANVCNEAALIAARHLSDAINEKHFEQAIERVIGGLEKKTQ 560          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: FTSH1_ORYSJ (Cell division protease ftsH homolog 1, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH1 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.322e-44
Identity = 92/217 (42.40%), Postives = 140/217 (64.52%), Query Frame = -3
Query:  225 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKN 875
            PKG LL GPPGTGKTLLARAVA      F   + SE V+ ++G G+  VR+LF  A+  AP I+F+DEID++G  R  +G G G+ E ++T+ +LL ++DGF  ++ + VL ATNR D+LD ALLRPGR DR++    P+   R+ IL++HSR   L + +D +KIA +  G +GA+L+ +  EA + A R     +++++   A+ +++    +KN
Sbjct:  265 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKAKAPCIVFIDEIDAVGRQR-GAGLGGGNDEREQTINQLLTEMDGFAGNSGVIVLAATNRPDVLDAALLRPGRFDRQVTVDRPDVAGRVKILEVHSRGKALAKDVDFEKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKN 480          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: FTSH1_HAEIN (Cell division protease ftsH homolog 1 OS=Haemophilus influenzae GN=ftsH-A PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.960e-44
Identity = 89/209 (42.58%), Postives = 138/209 (66.03%), Query Frame = -3
Query:  249 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV 875
            PKG+L+ GPPGTGKTLLARA+A      F  +SGS+ V+ ++G G+  VR++F  A+++AP +IF+DEID++G  R  +G G G  E ++T+ ++L ++DGF  ++ + V+ ATNR D+LD AL RPGR DR++    P+ + R  ILK+H R++++ + +D   +A    G SGA+L  +  EA +FA R  +  VT  +FE A  K+
Sbjct:  184 PKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCLIFIDEIDAVGRQR-GAGLGGGHDEREQTLNQMLVEMDGFSGNDGVIVIAATNRPDVLDPALTRPGRFDRQVVVGLPDVKGREQILKVHMRKVSVAQDVDAMTLARGTPGYSGADLANLVNEAALFAARVNKRTVTMLEFEKAKDKI 391          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: FTSH_MYCLE (Cell division protease ftsH homolog OS=Mycobacterium leprae GN=ftsH PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.172e-44
Identity = 95/210 (45.24%), Postives = 136/210 (64.76%), Query Frame = -3
Query:  246 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVM 875
            PKGVLLYGPPGTGKTLLARAVA      F  +SGS+ V+ ++G G+  VR+LF  A++++P IIF+DEID++G  R  +G G G  E ++T+ +LL ++DGF     + ++ ATNR DILD ALLRPGR DR+I   NP+   R  +L++HS+   +    DL  +A++  G +GA+L  V  EA +   RE  + +T    E AV +V+
Sbjct:  196 PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFDQAKQNSPCIIFVDEIDAVGRQR-GTGLGGGHDEREQTLNQLLVEMDGFGDRAGVILIAATNRPDILDPALLRPGRFDRQIPVSNPDLAGRRAVLRVHSKGKPIADDADLDGLAKRTVGMTGADLANVVNEAALLTARENGLVITGPALEEAVDRVI 404          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: AFG3_YEAST (Mitochondrial respiratory chain complexes assembly protein AFG3 OS=Saccharomyces cerevisiae GN=AFG3 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.172e-44
Identity = 96/229 (41.92%), Postives = 142/229 (62.01%), Query Frame = -3
Query:  210 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGS-GNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL--MRGIDLKKIAEKM----NGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRK 875
            P+G +L GPPGTGKTLLA+A A   +  F+ VSGSE V+ ++G G+  VR+LF  AR  APSIIF+DEID+IG  R + G+ G  + E + T+ +LL ++DGF  S+++ VL  TNR D+LD AL+RPGR DR I+  +P+   R  I  +H +R+NL  +   D+  ++ K+     G +GA++   C EA + A R    ++T   FE A+ +V+    +K   L K
Sbjct:  321 PRGAILSGPPGTGKTLLAKATAGEANVPFLSVSGSEFVEMFVGVGASRVRDLFTQARSMAPSIIFIDEIDAIGKERGKGGALGGANDEREATLNQLLVEMDGFTTSDQVVVLAGTNRPDVLDNALMRPGRFDRHIQIDSPDVNGRQQIYLVHLKRLNLDPLLTDDMNNLSGKLATLTPGFTGADIANACNEAALIAARHNDPYITIHHFEQAIERVIAGLEKKTRVLSK 549          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: FTSH_RICBR (Cell division protease ftsH homolog OS=Rickettsia bellii (strain RML369-C) GN=ftsH PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.755e-44
Identity = 94/218 (43.12%), Postives = 137/218 (62.84%), Query Frame = -3
Query:  222 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNM 875
            PKG LL GPPGTGKTLLA+A+A   +  F  +SGS+ V+ ++G G+  VR++F   + +AP IIF+DEID++G  R   G G G+ E ++T+ ++L ++DGFEA+  + ++ ATNR D+LD ALLRPGR DR+I   NP+ + R  IL++H +++     I  + IA    G SGAEL  +  EA + A R  +  V   D E A  KVM     ++M
Sbjct:  188 PKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKRNAPCIIFIDEIDAVGRHR-GIGMGGGNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDNALLRPGRFDRQITVSNPDIDGREKILQVHLKKVKYSTKIVPRIIARGTPGFSGAELANLVNEATLIAARRNKKEVEMHDLEEAKDKVMMGVERRSM 404          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: FTSH_MYCTU (Cell division protease ftsH homolog OS=Mycobacterium tuberculosis GN=ftsH PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.755e-44
Identity = 95/210 (45.24%), Postives = 135/210 (64.29%), Query Frame = -3
Query:  246 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVM 875
            PKGVLLYGPPGTGKTLLARAVA      F  +SGS+ V+ ++G G+  VR+LF  A++++P IIF+DEID++G  R  +G G G  E ++T+ +LL ++DGF     + ++ ATNR DILD ALLRPGR DR+I   NP+   R  +L++HS+   +    DL  +A++  G +GA+L  V  EA +   RE    +T    E AV +V+
Sbjct:  196 PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCIIFVDEIDAVGRQR-GAGLGGGHDEREQTLNQLLVEMDGFGDRAGVILIAATNRPDILDPALLRPGRFDRQIPVSNPDLAGRRAVLRVHSKGKPMAADADLDGLAKRTVGMTGADLANVINEAALLTARENGTVITGPALEEAVDRVI 404          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: FTSH_MYCTA (Cell division protease ftsH homolog OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=ftsH PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.755e-44
Identity = 95/210 (45.24%), Postives = 135/210 (64.29%), Query Frame = -3
Query:  246 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVM 875
            PKGVLLYGPPGTGKTLLARAVA      F  +SGS+ V+ ++G G+  VR+LF  A++++P IIF+DEID++G  R  +G G G  E ++T+ +LL ++DGF     + ++ ATNR DILD ALLRPGR DR+I   NP+   R  +L++HS+   +    DL  +A++  G +GA+L  V  EA +   RE    +T    E AV +V+
Sbjct:  196 PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCIIFVDEIDAVGRQR-GAGLGGGHDEREQTLNQLLVEMDGFGDRAGVILIAATNRPDILDPALLRPGRFDRQIPVSNPDLAGRRAVLRVHSKGKPMAADADLDGLAKRTVGMTGADLANVINEAALLTARENGTVITGPALEEAVDRVI 404          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: FTSH_MYCBO (Cell division protease ftsH homolog OS=Mycobacterium bovis GN=ftsH PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.755e-44
Identity = 95/210 (45.24%), Postives = 135/210 (64.29%), Query Frame = -3
Query:  246 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVM 875
            PKGVLLYGPPGTGKTLLARAVA      F  +SGS+ V+ ++G G+  VR+LF  A++++P IIF+DEID++G  R  +G G G  E ++T+ +LL ++DGF     + ++ ATNR DILD ALLRPGR DR+I   NP+   R  +L++HS+   +    DL  +A++  G +GA+L  V  EA +   RE    +T    E AV +V+
Sbjct:  196 PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCIIFVDEIDAVGRQR-GAGLGGGHDEREQTLNQLLVEMDGFGDRAGVILIAATNRPDILDPALLRPGRFDRQIPVSNPDLAGRRAVLRVHSKGKPMAADADLDGLAKRTVGMTGADLANVINEAALLTARENGTVITGPALEEAVDRVI 404          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: FTSH_MEDSA (Cell division protease ftsH homolog, chloroplastic OS=Medicago sativa GN=FTSH PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.755e-44
Identity = 91/217 (41.94%), Postives = 138/217 (63.59%), Query Frame = -3
Query:  225 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKN 875
            PKG LL GPPGTGKTLLARAVA      F   + SE V+ ++G G+  VR+LF  A+  AP I+F+DEID++G  R  +G G G+ E ++T+ +LL ++DGF  ++ + VL ATNR D+LD ALLRPGR DR++    P+   R+ IL++HSR   L + +D  KIA +  G +G +L+ +  EA + A R     +++++   A+ +++    +KN
Sbjct:  286 PKGCLLVGPPGTGKTLLARAVAGEAGTPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQR-GAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFDKIARRTPGFTGVDLQNLMNEAAILAARRDLKEISKDEIADALERIIAGPEKKN 501          
The following BLAST results are available for this feature:
BLAST of CX069559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 389
Match NameE-valueIdentityDescription
AFG32_MOUSE1.778e-4443.75AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1... [more]
FTSH1_ORYSJ2.322e-4442.40Cell division protease ftsH homolog 1, chloroplast... [more]
FTSH1_HAEIN3.960e-4442.58Cell division protease ftsH homolog 1 OS=Haemophil... [more]
FTSH_MYCLE5.172e-4445.24Cell division protease ftsH homolog OS=Mycobacteri... [more]
AFG3_YEAST5.172e-4441.92Mitochondrial respiratory chain complexes assembly... [more]
FTSH_RICBR6.755e-4443.12Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_MYCTU6.755e-4445.24Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_MYCTA6.755e-4445.24Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_MYCBO6.755e-4445.24Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_MEDSA6.755e-4441.94Cell division protease ftsH homolog, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11C09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11C09-F17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069559 ID=CX069559; Name=CX069559; organism=Citrus sinensis; type=EST; length=907bp
CTTGCATGCGAATTTAAATTTAGATAAAATAGATTGCAAATTTGTTTATC
ATAAGAGGCTAGAGCGCAAGAAAAGACAACAGTCAGGCTAAAAGGGCCTA
TCGTGCAAATGTCCCAGAACACGAGTGAGTGCCGTTAAGGACTACTTGAA
TCTTGCTCAGAAAATAAGCAAATACACAGCACAGCACATGGAAATGATTA
CTTCCACAACTTCCGCAAGGACATGTTCTTCTCTGTTTCTTTCTTCATGA
CCTTGGCCACTGCCATCTCAAAATCTTCCTGTGTTACATGGATCCTTCTC
TCTCTTAGAGCAAACATACCGGCTTCTGTGCACACAGCCTTAAGCTCCGC
ACCAGATGCACCATTCATCTTCTCGGCAATCTTCTTCAAATCAATGCCAC
GCATTAAATTCATTCTTCTTGAATGAATTTTTAGGATATCAAGACGAGAC
TCTTCATTAGGATTTGGAAATTCAATCTTTCTGTCAATTCGTCCTGGCCT
GAGAAGAGCTTGATCGAGAATATCAATTCGATTTGTCGCCATGAGAACCT
TAATTTTGTTTGATGCTTCAAATCCATCAAGCTGGTTGAGCAGCTCCAGC
ATAGTCCTCTGCACCTCACTGTCACCATTTCCGCTGCCAGATTCCATTCG
GGCAGATCCGATACTGTCAATTTCATCCATAAAAATGATAGACGGAGCAT
GTTCCCTTGCCATAACAAAAAGTTCTCTAACCATTCTGGAGCCTTCTCCA
ATGTATTTCTGGACTAATTCAGAACCAGAAACCCTGATGAAAGTACAATC
AGTATGATGAGCCACAGCTCTAGCCAACAGTGTTTTGCCAGTACCAGGTG
GTCCATATAGCAATACACCCTTNGGGTTGAGCTATTCCAAGAGACTCGAA
CAATTCG
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