CX069559

Overview
NameCX069559
Unique NameCX069559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: FIGL1_CAEBR (Fidgetin-like protein 1 OS=Caenorhabditis briggsae GN=figl-1 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.007e-33
Identity = 95/250 (38.00%), Postives = 130/250 (52.00%), Query Frame = -3
Query:  186 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS--NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGI-------DLKKIAEKMNGASGAELKAVCTEAGMFALRERRIH-----------VTQEDFEMAVAKVMKKETEKNMSLRKLWK*SFPC 875
            PKGVLL+GPPGTGKT++ R VA     TF  +S S L  K++GEG ++VR LF +AR   PS+IF+DEIDS+ SAR ES   +     +R   E L QLDG   +   ++ VL ATNR   LD+A  R  R  +++    P  +SR  I++      NL+RG        +L+KI    +G SGA+++ +CTEA M  +RE               VT  DF  A   V     +  +     W   F C
Sbjct:  349 PKGVLLFGPPGTGKTMIGRCVASQAQATFFNISASSLTSKWVGEGEKLVRALFSVARLKLPSVIFIDEIDSLLSARSESEHESS----RRIKTEFLVQLDGVNTAPDERLLVLGATNRPQELDEAARR--RFQKRLYIALPEPDSRTQIVE------NLLRGTRHEITDHNLEKIRRLTDGYSGADMRQLCTEAAMGPIREIGDQIATINKDDIRAVTVADFTEAARVVRPTVDDSQLDAYAAWDKKFGC 586          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: SPAST_CAEEL (Probable spastin homolog spas-1 OS=Caenorhabditis elegans GN=spas-1 PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 9.151e-33
Identity = 95/247 (38.46%), Postives = 139/247 (56.28%), Query Frame = -3
Query:  186 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTM-LELLNQLDG--FEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGI---DLKKIAEKMNGASGAELKAVCTEAGMFALRE---RRIHVTQ---------EDFEMAVAKVMKKETEKNMSLRKLWK*SFPC 872
            KG+LL+GPPG GKTLLA+AVA  +   F  +S S L  K++G+  + +R LF +AR   PSIIF+DEIDSI   R E      D+EV R M  E L Q DG    A ++I V+ ATNR   LD A+LR  R  ++I    P+EE+R +++    ++ N+M G+   D++ IA   +G S ++L A+C EA M  +RE    ++ +T           DF+ A+  +    ++K MS    +  SF C
Sbjct:  273 KGILLFGPPGNGKTLLAKAVAGESKQMFFNISASSLTSKWVGDSEKTIRGLFQIARNAQPSIIFIDEIDSILCERSEK-----DAEVSRRMKTEFLVQFDGATSSADDRILVIGATNRPHELDDAVLR--RFPKRIMLNLPDEEARKELITKTLKKHNMMDGLISSDIRYIASNTSGFSNSDLVALCKEAAMVPIREIDRSKLSMTDGEKIRKIRASDFDTALRTIRPSTSQKIMSKLSDFSRSFGC 512          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: YHI5_SCHPO (Uncharacterized AAA domain-containing protein P22H7.05c OS=Schizosaccharomyces pombe GN=SPBP22H7.05c PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.195e-32
Identity = 86/210 (40.95%), Postives = 126/210 (60.00%), Query Frame = -3
Query:  270 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVS-----GSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN-LMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER--RIHVTQEDF 875
            P+GVL +GPPGTGKTL+AR +A +      ++S     GS+ + K++GE  R +R LF  AR   PSIIF DEID +   R  S      S +  T+L L+   DG +   ++ V+ ATNR + LD AL RPGR DR+  FP PN+++R+ IL+I+S   +  +    L  +AE  +G  GA+LKA+CTEA + A+R    +I+ + + F
Sbjct:  406 PRGVLFHGPPGTGKTLMARVLAANCSTKNQKISFFLRKGSDCLSKWVGEAERQLRLLFEEARRVQPSIIFFDEIDGLAPIR-SSKQEQTHSSIVSTLLALM---DGLDTRGQVVVIGATNRPNDLDPALRRPGRFDREFYFPLPNKQARMKILEINSLHFSPKIPESYLLHLAESTSGYGGADLKALCTEAALNAVRRTFPQIYTSSDKF 611          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PEX6_SCHPO (Peroxisomal ATPase pex6 OS=Schizosaccharomyces pombe GN=pex6 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.561e-32
Identity = 81/200 (40.50%), Postives = 122/200 (61.00%), Query Frame = -3
Query:  297 LNPK-GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNK--IKVLMATNRIDILDQALLRPGRIDRKIEFP-NPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMN-GASGAELKAVCTEAGMFALRER 881
            L P+ GVLLYGPPGTGKTLLA+AVA      F+ + G EL+  Y+GE    VR +F  AR  +P +IF DE+DSI   R    S +  + + R + +LL +LD     N   + V+ ATNR D+LD +LLRPGR D+ +    N +EES+  +L+  ++   L   IDL +IA+  +   +GA++ A+C++A + A++ +
Sbjct:  685 LKPRSGVLLYGPPGTGKTLLAKAVATELSLEFVSIKGPELLNMYVGESEANVRNVFEKARNSSPCVIFFDELDSIAPHR--GNSSDSGNVMDRVVSQLLAELDSISKDNNKYVFVIGATNRPDLLDPSLLRPGRFDKLVYLGINKSEESKASMLRALTKTFKLDETIDLNEIAKNCHPNFTGADMYALCSDAVLSAIKRK 882          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PEX6_KLULA (Peroxisomal biogenesis factor 6 OS=Kluyveromyces lactis GN=PEX6 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.561e-32
Identity = 87/224 (38.84%), Postives = 130/224 (58.04%), Query Frame = -3
Query:  213 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEA-SNKIKVLMATNRIDILDQALLRPGRIDRKIEFP-NPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMN-GASGAELKAVCTEAGMFALRERRIHVTQ--EDFEMAVAKVMKKETEKNMSLR 869
            G+L YGPPGTGKTLLA+A+A +    F  V G EL+  YIGE    VR +F  AR+  P +IF DE+DS+   R   G   G   + R + +LL +LDG  +  + + V+ ATNR D+LD+ALLRPGR D+ +    +  ++ + +I+K  +R+  L  GID+  IA+K     +GA+  A+C++A + A+      V +  E + M        E +KN+SLR
Sbjct:  737 GILFYGPPGTGKTLLAKAIASNFSLNFFSVKGPELLNMYIGESEANVRRVFQKARDAKPCVIFFDELDSVAPKRGNQGDSGG--VMDRIVSQLLAELDGMSSGGDGVFVIGATNRPDLLDEALLRPGRFDKMLYLGISDTDKKQANIIKALTRKFTLESGIDILDIAKKCPFNYTGADFYALCSDALLNAMTRVAGEVDEKWEKYNM--------ENKKNISLR 950          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: SPG7_RAT (Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.662e-32
Identity = 75/182 (41.21%), Postives = 112/182 (61.54%), Query Frame = -3
Query:  336 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDL--KKIAEKMNGASGAELKA 875
            PKG LL GPPG GKTLLA+AVA      F+ ++G E V+   G G+  VR LF  AR  AP I+++DEID++G  R  S SG  ++E ++T+ +LL ++DG   ++ + VL +TNR D+LD AL+RPGR+DR +    P  + R +I + H + + L +      +++AE   G SG   K+
Sbjct:  342 PKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTSMSGFSNTEEEQTLNQLLVEMDGMGTADHVIVLASTNRADVLDNALMRPGRLDRHVFIDLPTLQERREIFEQHLKGLKLTQPSSFYSQRLAELTPGFSGTAKKS 523          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: YEJJ_SCHPO (Uncharacterized AAA domain-containing protein C31G5.19 OS=Schizosaccharomyces pombe GN=SPAC31G5.19 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.931e-32
Identity = 86/244 (35.25%), Postives = 135/244 (55.33%), Query Frame = -3
Query:  210 PKGVLLYGPPGTGKTLLARAVA-----HHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDL-KKIAEKMNGASGAELKAVCTEAGMFALRE----------------RRIHVTQEDFEMAVAKVMKKETEKNMSLRK 875
            P+GVL +GPPGTGKTL+ARA+A      +   +F    G++ + K++GE  R +R LF  A+   PSIIF DEID +   R  S      + +  T+L L+   DG E+  ++ ++ ATNR D +D AL RPGR DR+  FP P+ ++R  I++IH+R  +      L   +AEK  G  GA+L+A+CTEA + +++                 + I V  +DF M++ +++      ++S  K
Sbjct:  300 PRGVLFHGPPGTGKTLMARALAAACSSENKKVSFYMRKGADCLSKWVGEAERQLRLLFEEAKSTQPSIIFFDEIDGLAPVR-SSKQEQIHASIVSTLLALM---DGMESRGQVIIIGATNRPDAVDPALRRPGRFDREFYFPLPDRDARKKIIEIHTRNWDPPVPEWLCSMLAEKSKGYGGADLRALCTEAALNSIKRTYPQLYRSTKRLQIDPKTIKVKVKDFVMSMKRMIPSSERSSISPSK 539          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: SPAST_DROPE (Spastin OS=Drosophila persimilis GN=spas PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.931e-32
Identity = 82/236 (34.75%), Postives = 135/236 (57.20%), Query Frame = -3
Query:  204 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGID-LKKIAEKMNGASGAELKAVCTEAGMFALRERRI------------HVTQEDFEMAVAKVMKKETEKNMSLRKLW 872
            KG+LL+GPPG GKTLLARAVA     TF+ +S + L  KY+G+G ++VR LF +AR   PSIIF+DE+DS+ S R  SG       ++   L   + L G    ++I VL ATNR   LD+A LR  R  +++    P+E++R  +L    ++       D L+++++  +G SG++L A+  +A +  +RE  +            H+T++DF  ++ ++ +    +++SL + W
Sbjct:  547 KGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHLQPSIIFIDEVDSLLSER-SSGEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTDALRRLSKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDINAMRHITEKDFHNSLKRIRRSVAPQSLSLYEKW 779          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: NSF2_DROME (Vesicle-fusing ATPase 2 OS=Drosophila melanogaster GN=Nsf2 PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 5.931e-32
Identity = 88/221 (39.82%), Postives = 127/221 (57.47%), Query Frame = -3
Query:  267 KGVLLYGPPGTGKTLLARAVAHHTDCTFIR-VSGSELVQKYIGEGSRMVRELFVMAREHAPS--------IIFMDEIDSIGSARMESGSGNGDSEVQRTML-ELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRM----NLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALR-----ERRIHVTQEDFE 872
            KG+LLYGPPGTGKTL+AR +    +    + V+G +++ KY+GE    +R LF  A E            II  DEID+I  AR   GS  G+S V  T++ +LL ++DG E  N I V+  TNR D++D+ALLRPGR++ ++E   PNE+ R+ IL IH++RM     +   +D  +IA K    SGAEL+ +   A   A+      + ++HV  E  E
Sbjct:  259 KGILLYGPPGTGKTLMARQIGTMLNAREPKIVNGPQILDKYVGESEANIRRLFAEAEEEEKRLGPNSGLHIIIFDEIDAICKAR---GSVAGNSGVHDTVVNQLLAKIDGVEQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEISLPNEQGRVQILNIHTKRMRDFNKIASDVDNNEIAAKTKNFSGAELEGLVRAAQSTAMNRLIKADSKVHVDPEAME 476          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: FIGL1_XENLA (Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl1 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.931e-32
Identity = 87/245 (35.51%), Postives = 140/245 (57.14%), Query Frame = -3
Query:  186 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLM--ATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDI-LKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRI----HVTQE--------DFEMAVAKVMKKETEKNMSLRKLWK*SFPC 875
            PKG+LL+GPPGTGKTL+ + +A  +  TF  +S S L  K++GEG +MVR LF +AR H P++IF+DEIDS+ S R   G G  +S  +R   E L QLDG   S++ ++L+  ATNR   +D+A  R  R+ +++  P P   +R  I + + S+    +   +++ I  + +G SGA++  +C EA +  +R  ++     +T E        DF+ A   V    ++K++ L + W  +F C
Sbjct:  415 PKGILLFGPPGTGKTLIGKCIACQSGATFFSISASSLTSKWVGEGEKMVRALFTVARCHQPAVIFIDEIDSLLSQR---GEGEHESS-RRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVVSLMSKEHCSLTEQEVEAIVLQADGFSGADMTQLCREAALGPIRSIQLMDISTITAEQVRPIAYIDFQSAFLVVRPSVSQKDLELYENWNKTFGC 653          
The following BLAST results are available for this feature:
BLAST of CX069559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 389
Match NameE-valueIdentityDescription
FIGL1_CAEBR7.007e-3338.00Fidgetin-like protein 1 OS=Caenorhabditis briggsae... [more]
SPAST_CAEEL9.151e-3338.46Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
YHI5_SCHPO1.195e-3240.95Uncharacterized AAA domain-containing protein P22H... [more]
PEX6_SCHPO1.561e-3240.50Peroxisomal ATPase pex6 OS=Schizosaccharomyces pom... [more]
PEX6_KLULA1.561e-3238.84Peroxisomal biogenesis factor 6 OS=Kluyveromyces l... [more]
SPG7_RAT2.662e-3241.21Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1[more]
YEJJ_SCHPO5.931e-3235.25Uncharacterized AAA domain-containing protein C31G... [more]
SPAST_DROPE5.931e-3234.75Spastin OS=Drosophila persimilis GN=spas PE=3 SV=1[more]
NSF2_DROME5.931e-3239.82Vesicle-fusing ATPase 2 OS=Drosophila melanogaster... [more]
FIGL1_XENLA5.931e-3235.51Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11C09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11C09-F17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069559 ID=CX069559; Name=CX069559; organism=Citrus sinensis; type=EST; length=907bp
CTTGCATGCGAATTTAAATTTAGATAAAATAGATTGCAAATTTGTTTATC
ATAAGAGGCTAGAGCGCAAGAAAAGACAACAGTCAGGCTAAAAGGGCCTA
TCGTGCAAATGTCCCAGAACACGAGTGAGTGCCGTTAAGGACTACTTGAA
TCTTGCTCAGAAAATAAGCAAATACACAGCACAGCACATGGAAATGATTA
CTTCCACAACTTCCGCAAGGACATGTTCTTCTCTGTTTCTTTCTTCATGA
CCTTGGCCACTGCCATCTCAAAATCTTCCTGTGTTACATGGATCCTTCTC
TCTCTTAGAGCAAACATACCGGCTTCTGTGCACACAGCCTTAAGCTCCGC
ACCAGATGCACCATTCATCTTCTCGGCAATCTTCTTCAAATCAATGCCAC
GCATTAAATTCATTCTTCTTGAATGAATTTTTAGGATATCAAGACGAGAC
TCTTCATTAGGATTTGGAAATTCAATCTTTCTGTCAATTCGTCCTGGCCT
GAGAAGAGCTTGATCGAGAATATCAATTCGATTTGTCGCCATGAGAACCT
TAATTTTGTTTGATGCTTCAAATCCATCAAGCTGGTTGAGCAGCTCCAGC
ATAGTCCTCTGCACCTCACTGTCACCATTTCCGCTGCCAGATTCCATTCG
GGCAGATCCGATACTGTCAATTTCATCCATAAAAATGATAGACGGAGCAT
GTTCCCTTGCCATAACAAAAAGTTCTCTAACCATTCTGGAGCCTTCTCCA
ATGTATTTCTGGACTAATTCAGAACCAGAAACCCTGATGAAAGTACAATC
AGTATGATGAGCCACAGCTCTAGCCAACAGTGTTTTGCCAGTACCAGGTG
GTCCATATAGCAATACACCCTTNGGGTTGAGCTATTCCAAGAGACTCGAA
CAATTCG
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