CX069559

Overview
NameCX069559
Unique NameCX069559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: FIGL1_DROME (Fidgetin-like protein 1 OS=Drosophila melanogaster GN=CG3326 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 7.251e-30
Identity = 85/243 (34.98%), Postives = 135/243 (55.56%), Query Frame = -3
Query:  204 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLM--ATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILK--IHSRRMNLMRGIDLKKI---AEKMNGASGAELKAVCTEAGMFALR------------ERRIHVTQEDFEMAVAKVMKKETEKNMSLRKLW 875
            P+GVLL+GPPGTGKTL+A+++A      F  ++ S L  K++G+  ++V+ LF +A  H P+IIF+DE+DS+ S R    S N +    R   E L  LDG  ++ +I+VL+  ATNR   LD+A+ R  R  R++  P P  E+R  I++  IH  + NL    D++++   AE  +G SGA++  +C  A M  LR             +   VT +DF+ A+  + K  + ++    + W
Sbjct:  283 PRGVLLFGPPGTGKTLIAKSIASQAKAKFFSINPSSLTSKWVGDAEKLVKTLFAVAAAHQPAIIFIDEVDSLLSKR----SANENESTLRLKNEFLIHLDGAASNEEIRVLVIGATNRPQELDEAVRR--RFVRRLYVPLPTREARQKIIEKLIHQVKHNL----DVRQVIELAELTDGYSGADVDTLCRYASMAPLRSLTPDQMEVIETHQLPAVTMDDFKQALRVISKSVSSEDCKQFEAW 515          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: SPAST_DICDI (Spastin OS=Dictyostelium discoideum GN=DDB_G0287165 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.470e-30
Identity = 85/243 (34.98%), Postives = 133/243 (54.73%), Query Frame = -3
Query:  192 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLM--ATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILK--IHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQ-----------EDFEMAVAKVMKKETEKNMSLRKLWK*SF 875
            PKG+LL+GPPG GKT++A+AVA+ +  TF  +S S L  KY+G+G ++VR LF +A    PSIIF+DEIDS+ + R    S N     +R   E+L Q DG   +   +VL+  ATNR + LD A LR  R+ ++I    P  E+RL I++  +  +R +L +   +  +AE   G SG +L A+C +A    +R   I +             +DF  ++ ++    T +++   + W   F
Sbjct:  417 PKGLLLFGPPGNGKTMIAKAVAYESKVTFFSISSSSLTSKYVGDGEKLVRALFAVATHFQPSIIFIDEIDSLLTER----SSNESEASRRLKTEILVQFDGARTNGDERVLVMGATNRPEDLDDAALR--RLVKRIYVGLPELETRLQIIQHLLVGQRHSLTKQ-QINSLAEVTQGYSGFDLAALCKDAAYEPIRRLGIGIKDLELNEISLISFKDFANSLKQIRPSVTSQSLKSFEKWNQKF 652          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: NSF_CAEEL (Vesicle-fusing ATPase OS=Caenorhabditis elegans GN=nsf-1 PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 9.470e-30
Identity = 82/203 (40.39%), Postives = 121/203 (59.61%), Query Frame = -3
Query:  306 KGVLLYGPPGTGKTLLARAVAHHTDCTFIR-VSGSELVQKYIGEGSRMVRELFVMAREH--------APSIIFMDEIDSIGSARMESGSGNGDSEVQRTML-ELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRM----NLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFAL 872
            +G+LL+GPPGTGKTL+AR +    +    + V+G +++ KY+GE    VR+LF  A E            II  DEID+I   R   GS  G S V  T++ +LL+++DG E  N I V+  TNR D++D+ALLRPGR++ ++E   P+E  RL ILKIH+ RM     +   +DL+ I+++    SGAEL+ +   A   A+
Sbjct:  331 RGILLFGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESESNVRKLFADAEEEWRRCGANSGLHIIIFDEIDAICKQR---GSMAGSSSVHDTVVNQLLSKMDGVEQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEVSLPDETGRLQILKIHTARMREYNKMDPNVDLEDISKRTKNFSGAELEGLVRAAQSSAM 530          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: KATL2_XENTR (Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus tropicalis GN=katnal2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.615e-29
Identity = 79/198 (39.90%), Postives = 122/198 (61.62%), Query Frame = -3
Query:  300 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNK-IKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILK------IHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 872
            KG+LLYGPPGTGKTLLA+AVA   + TF  +S S +V K+ G+  ++VR LF +AR HAPS IF+DE++S+ S R  +G G      +R   ELL Q+DG   S+  + VL A+N    LD A+LR  R++++I    P++E+R  +++       +S  + L   +D   +  + +G SG++++ VC EA M  +R+
Sbjct:  292 KGLLLYGPPGTGKTLLAKAVATECNTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQR-GTGPGGEHEGSRRMKTELLVQMDGLARSDDLVFVLAASNLPWELDYAMLR--RLEKRILVDLPSKEARQAMIQHWLPPVSNSSGVELRTDLDYSTLGAETDGYSGSDIRLVCKEAAMRPVRK 486          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: SPAST_DROVI (Spastin OS=Drosophila virilis GN=spas PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.110e-29
Identity = 80/239 (33.47%), Postives = 135/239 (56.49%), Query Frame = -3
Query:  204 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS---NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESR-LDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIH------------VTQEDFEMAVAKVMKKETEKNMSLRKLW 872
            KG+LL+GPPG GKTLLARAVA     TF+ +S + L  KY+G+G ++VR LF +AR   PSIIF+DE+DS+ S R    S N     +R   E L + DG   +   ++I VL ATNR   LD+A LR  R  +++    P  ++R L + ++  ++ + +    L ++A+  +G SG++L A+  +A +  +RE  +             +T++DF  ++ ++ +    ++++  + W
Sbjct:  528 KGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSER----SSNEHEASRRLKTEFLVEFDGLPGNPEGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPGVQTRELLLSRLLQKQGSPLDTEALARLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRPITEKDFHNSLKRIRRSVAPQSLNSYEKW 760          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: SPAST_DROSI (Spastin OS=Drosophila simulans GN=spas PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.110e-29
Identity = 80/239 (33.47%), Postives = 137/239 (57.32%), Query Frame = -3
Query:  204 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS---NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESR-LDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIH------------VTQEDFEMAVAKVMKKETEKNMSLRKLW 872
            KG+LL+GPPG GKTLLARAVA     TF+ +S + L  KY+G+G ++VR LF +AR   PSIIF+DE+DS+ S R    S +     +R   E L + DG   +   ++I VL ATNR   LD+A LR  R  +++    P+E++R L + ++  ++ + +    L+++A+  +G SG++L A   +A +  +RE  +             +T++DF  ++ ++ +    ++++  + W
Sbjct:  517 KGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSER----SSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTARPKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKW 749          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: SPAST_DROGR (Spastin OS=Drosophila grimshawi GN=spas PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.110e-29
Identity = 80/239 (33.47%), Postives = 135/239 (56.49%), Query Frame = -3
Query:  204 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS---NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESR-LDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRI------------HVTQEDFEMAVAKVMKKETEKNMSLRKLW 872
            KG+LL+GPPG GKTLLARAVA     TF+ +S + L  KY+G+G ++VR LF +AR   PSIIF+DE+DS+ S R    S N     +R   E L + DG   +   ++I VL ATNR   LD+A LR  R  +++    P+ ++R L + ++  ++ + +    L ++A+   G SG++L A+  +A +  +RE  +             +T++DF  ++ ++ +    ++++  + W
Sbjct:  541 KGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSER----SSNEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDVQTRELLLNRLLQKQGSPLDSDALGRLAKITEGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRQITEKDFHNSLKRIRRSVAPQSLNSYEKW 773          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: SPAST_DROMO (Spastin OS=Drosophila mojavensis GN=spas PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.755e-29
Identity = 80/239 (33.47%), Postives = 135/239 (56.49%), Query Frame = -3
Query:  204 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS---NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESR-LDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIH------------VTQEDFEMAVAKVMKKETEKNMSLRKLW 872
            KG+LL+GPPG GKTLLARAVA     TF+ +S + L  KY+G+G ++VR LF +AR   PSIIF+DE+DS+ S R    S N     +R   E L + DG   +   ++I VL ATNR   LD+A LR  R  +++    P  ++R L + ++  ++ + +    L ++A+  +G SG++L A+  +A +  +RE  +             +T++DF  ++ ++ +    ++++  + W
Sbjct:  524 KGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHLQPSIIFIDEVDSLLSER----SSNEHEASRRLKTEFLVEFDGLPGNPEGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPEVQTRELLLSRLLQKQGSPLDTEALARLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRPITEKDFHNSLKRIRRSVAPQSLNSYEKW 756          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PEX6_NEUCR (Peroxisomal biogenesis factor 6 OS=Neurospora crassa GN=pex-6 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.598e-29
Identity = 76/211 (36.02%), Postives = 118/211 (55.92%), Query Frame = -3
Query:  255 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE----ASNKIKVLMATNRIDILDQALLRPGRIDRKIEF-PNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGA-SGAELKAVCTEAGMFALRERRIHVTQEDFEMAVA 869
            G+L YGPPGTGKTLLA+A+A      F  V G EL+  YIGE    VR +F  AR+  P ++F DE+DS+   R   G   G   + R + +LL +LDG          + V+ ATNR D+LD ALLRPGR D+ +    +   + ++ I++  +R+  L   + L+ +AE++    +GA+  A+C++A + A+  +   V  +  E+  A
Sbjct: 1026 GILFYGPPGTGKTLLAKAIATEYSLNFFSVKGPELLNMYIGESEANVRRVFQRARDARPCVVFFDELDSVAPKRGNQGDSGG--VMDRIVSQLLAELDGMSGGEGGGGGVFVIGATNRPDLLDPALLRPGRFDKMLYLGVSDTHDKQVTIMEALTRKFTLHPTVSLRSVAERLPFTYTGADFYALCSDAMLKAVTRQATLVDTKIRELNAA 1234          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: KATL2_HUMAN (Katanin p60 ATPase-containing subunit A-like 2 OS=Homo sapiens GN=KATNAL2 PE=2 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 4.700e-29
Identity = 79/198 (39.90%), Postives = 120/198 (60.61%), Query Frame = -3
Query:  300 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS-NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDIL------KIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 872
            KG+LLYGPPGTGKTLLA+AVA     TF  +S S +V K+ G+  ++VR LF +AR HAPS IF+DE++S+ S R  +  G  +  + R   ELL Q+DG   S + + VL A+N    LD A+LR  R++++I    P+ E+R  ++         SR + L   ++   ++++  G SG+++K VC EA M  +R+
Sbjct:  288 KGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGTASGGEHEGSL-RMKTELLVQMDGLARSEDLVFVLAASNLPWELDCAMLR--RLEKRILVDLPSREARQAMIYHWLPPVSKSRALELHTELEYSVLSQETEGYSGSDIKLVCREAAMRPVRK 482          
The following BLAST results are available for this feature:
BLAST of CX069559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 389
Match NameE-valueIdentityDescription
FIGL1_DROME7.251e-3034.98Fidgetin-like protein 1 OS=Drosophila melanogaster... [more]
SPAST_DICDI9.470e-3034.98Spastin OS=Dictyostelium discoideum GN=DDB_G028716... [more]
NSF_CAEEL9.470e-3040.39Vesicle-fusing ATPase OS=Caenorhabditis elegans GN... [more]
KATL2_XENTR1.615e-2939.90Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
SPAST_DROVI2.110e-2933.47Spastin OS=Drosophila virilis GN=spas PE=3 SV=1[more]
SPAST_DROSI2.110e-2933.47Spastin OS=Drosophila simulans GN=spas PE=3 SV=1[more]
SPAST_DROGR2.110e-2933.47Spastin OS=Drosophila grimshawi GN=spas PE=3 SV=1[more]
SPAST_DROMO2.755e-2933.47Spastin OS=Drosophila mojavensis GN=spas PE=3 SV=1[more]
PEX6_NEUCR3.598e-2936.02Peroxisomal biogenesis factor 6 OS=Neurospora cras... [more]
KATL2_HUMAN4.700e-2939.90Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11C09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11C09-F17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069559 ID=CX069559; Name=CX069559; organism=Citrus sinensis; type=EST; length=907bp
CTTGCATGCGAATTTAAATTTAGATAAAATAGATTGCAAATTTGTTTATC
ATAAGAGGCTAGAGCGCAAGAAAAGACAACAGTCAGGCTAAAAGGGCCTA
TCGTGCAAATGTCCCAGAACACGAGTGAGTGCCGTTAAGGACTACTTGAA
TCTTGCTCAGAAAATAAGCAAATACACAGCACAGCACATGGAAATGATTA
CTTCCACAACTTCCGCAAGGACATGTTCTTCTCTGTTTCTTTCTTCATGA
CCTTGGCCACTGCCATCTCAAAATCTTCCTGTGTTACATGGATCCTTCTC
TCTCTTAGAGCAAACATACCGGCTTCTGTGCACACAGCCTTAAGCTCCGC
ACCAGATGCACCATTCATCTTCTCGGCAATCTTCTTCAAATCAATGCCAC
GCATTAAATTCATTCTTCTTGAATGAATTTTTAGGATATCAAGACGAGAC
TCTTCATTAGGATTTGGAAATTCAATCTTTCTGTCAATTCGTCCTGGCCT
GAGAAGAGCTTGATCGAGAATATCAATTCGATTTGTCGCCATGAGAACCT
TAATTTTGTTTGATGCTTCAAATCCATCAAGCTGGTTGAGCAGCTCCAGC
ATAGTCCTCTGCACCTCACTGTCACCATTTCCGCTGCCAGATTCCATTCG
GGCAGATCCGATACTGTCAATTTCATCCATAAAAATGATAGACGGAGCAT
GTTCCCTTGCCATAACAAAAAGTTCTCTAACCATTCTGGAGCCTTCTCCA
ATGTATTTCTGGACTAATTCAGAACCAGAAACCCTGATGAAAGTACAATC
AGTATGATGAGCCACAGCTCTAGCCAACAGTGTTTTGCCAGTACCAGGTG
GTCCATATAGCAATACACCCTTNGGGTTGAGCTATTCCAAGAGACTCGAA
CAATTCG
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