CX069559

Overview
NameCX069559
Unique NameCX069559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: VPS4_SCHPO (Suppressor protein of bem1/bed5 double mutants OS=Schizosaccharomyces pombe GN=vps4 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 6.138e-29
Identity = 82/197 (41.62%), Postives = 123/197 (62.44%), Query Frame = -3
Query:  288 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTM-LELLNQLDGF-EASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRM-NLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIH 869
            G+LLYGPPGTGK+ LA+AVA     TF  +S S+LV K++GE  R+VR+LF MARE  PSIIF+DEIDS+  +R E     G+SE  R +  E L Q++G  +  + + VL ATN    LD A+ R  R +++I  P PN  +R  + +++  ++ + +   D K++A+  +G SG+++  V  +A M  +  RRIH
Sbjct:  164 GILLYGPPGTGKSYLAKAVATEAGSTFFSISSSDLVSKWMGESERLVRQLFEMAREQKPSIIFIDEIDSLCGSRSE-----GESESSRRIKTEFLVQMNGVGKDESGVLVLGATNIPWTLDSAIRR--RFEKRIYIPLPNAHARARMFELNVGKIPSELTSQDFKELAKMTDGYSGSDISIVVRDAIMEPV--RRIH 351          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PEX6_ASHGO (Peroxisomal biogenesis factor 6 OS=Ashbya gossypii GN=PEX6 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 6.138e-29
Identity = 76/191 (39.79%), Postives = 111/191 (58.12%), Query Frame = -3
Query:  306 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE-ASNKIKVLMATNRIDILDQALLRPGRIDRKIEFP-NPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGA-SGAELKAVCTEAGMFAL 869
            G+L YGPPGTGKTLLA+AVA +    F  V G EL+  YIGE    VR +F  AR+  P +IF DE+DS+   R   G   G   + R + +LL +LDG     + + V+ ATNR D+LD+ALLRPGR D+ +    +   E + +IL+  +R+  L   + L  +A       +GA+  A+C++A + A+
Sbjct:  758 GILFYGPPGTGKTLLAKAVATNFSLNFFSVKGPELLNMYIGESEANVRRVFQRARDAKPCVIFFDELDSVAPKRGNQGDSGG--VMDRIVSQLLAELDGLSTGGDGLFVIGATNRPDLLDEALLRPGRFDKLLYLGISDTNEKQANILRALTRKFTLDPDVSLDDLAASCPFTYTGADFYALCSDAMLNAM 946          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PEX6_YARLI (Peroxisomal biogenesis factor 6 OS=Yarrowia lipolytica GN=PEX6 PE=3 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 1.367e-28
Identity = 73/192 (38.02%), Postives = 112/192 (58.33%), Query Frame = -3
Query:  306 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS--NKIKVLMATNRIDILDQALLRPGRIDRKIEFP-NPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGA-SGAELKAVCTEAGMFAL 869
            G+L YGPPGTGKTLLA+A+A      F  V G EL+  YIGE    VR +F  AR+  P ++F DE+DS+   R   G   G   + R + +LL +LDG   +    + V+ ATNR D+LD+ALLRPGR D+ +    +   E +  I++  +R+  L   + L+ I+++     +GA+  A+C++A + A+
Sbjct:  754 GILFYGPPGTGKTLLAKAIATTFSLNFFSVKGPELLNMYIGESEANVRRVFQKARDAKPCVVFFDELDSVAPQRGNQGDSGG--VMDRIVSQLLAELDGMSTAGGEGVFVVGATNRPDLLDEALLRPGRFDKMLYLGISDTHEKQQTIMEALTRKFRLAADVSLEAISKRCPFTFTGADFYALCSDAMLNAM 943          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: SPAST_BRUMA (Probable spastin homolog Bm1_53365 OS=Brugia malayi GN=Bm1_53365 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.786e-28
Identity = 94/243 (38.68%), Postives = 140/243 (57.61%), Query Frame = -3
Query:  201 KGVLLYGPPGTGKTLLARAVAHHTDCT-FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTM-LELLNQLDGFEAS--NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILK--IHSRRMNLMRGIDLKKI-AEKMNGASGAELKAVCTEAGMFALRE------------RRIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 872
            +G+LL+GPPG GKTLLARAVA     T F+ VS + L  K++G+  ++VR LF +AR   P+IIF+DEIDSI   R E      ++EV R M  E L Q+DG  +S  +++ V+ ATNR + LD A+LR  R  ++I    PN  +RL ++   +   + +   G+  ++I AE  +G S ++L A+C EA M  +R+                +T  DFE+A+ K +K  T + M L+KL K
Sbjct:  212 QGILLFGPPGNGKTLLARAVAGECGSTMFLNVSAASLTSKWVGDAEKIVRALFQIARNGQPTIIFIDEIDSILCERNEK-----ETEVSRRMKTEFLIQMDGMLSSKDDRLLVIGATNRPEELDSAILR--RFPKRILIDVPNAAARLKLIMSLLEKTKTSFDLGLTQRQILAEWTHGYSNSDLVALCREAAMVPIRDLSRKDIKNLVSTELRPITLRDFEIAM-KAIKPSTNERM-LQKLRK 445          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PEX6_CANGA (Peroxisomal biogenesis factor 6 OS=Candida glabrata GN=PEX6 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.786e-28
Identity = 72/191 (37.70%), Postives = 111/191 (58.12%), Query Frame = -3
Query:  306 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEA-SNKIKVLMATNRIDILDQALLRPGRIDRKIEFP-NPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMN-GASGAELKAVCTEAGMFAL 869
            G+L YGPPGTGKTLLA+A+A +    F  V G EL+  YIGE    VR +F  AR+  P +IF DE+DS+   R   G   G   + R + +LL +LDG  +  + + ++ ATNR D+LD+ALLRPGR D+ I        E + +I++  +R+  +   I+  ++        +GA+  A+C++A + A+
Sbjct:  753 GILFYGPPGTGKTLLAKAIATNFSLNFFSVKGPELLNMYIGESEANVRRVFQKARDAKPCVIFFDEVDSVAPKRGNQGDSGG--VMDRIVSQLLAELDGMSSDGDGVFIIGATNRPDLLDEALLRPGRFDKLIYLGIADTREKQANIMRALTRKFKVSSDINFDELVSDFPFSYTGADFYALCSDAMLKAM 941          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: ATD1A_DANRE (ATPase family AAA domain-containing protein 1-A OS=Danio rerio GN=atad1a PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.786e-28
Identity = 79/223 (35.43%), Postives = 125/223 (56.05%), Query Frame = -3
Query:  207 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKL 875
            PKGVLLYGPPG GKTL+A+A A  + C FI +  S L  K+ GE  ++   +F +A +  P IIF+DEIDS    R  S      + ++   + L + LD  E ++++ V+ ATNR   +D A+LR  R+        PN   R +IL++     NL   I+LK+IA +  G SG++LK +C +A M+ +R+   +V ++  +    +    E E+++  R+L
Sbjct:  129 PKGVLLYGPPGCGKTLIAKATAKASGCRFINLQASTLTDKWYGESQKLTAAVFSLAVKIQPCIIFLDEIDSFLRNR-SSMDHEATAMMKAQFMSLWDGLDTGE-NSQVMVMGATNRPQDVDAAILR--RMPTAFHVGLPNAAQREEILRLILSGENLSNAINLKEIASQSEGYSGSDLKELCRDAAMYRVRD---YVRKQQMKQIAQQFQLDEEEEHVDSRQL 344          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: VPS4B_HUMAN (Vacuolar protein sorting-associated protein 4B OS=Homo sapiens GN=VPS4B PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 2.332e-28
Identity = 76/194 (39.18%), Postives = 115/194 (59.28%), Query Frame = -3
Query:  300 KGVLLYGPPGTGKTLLARAVAHHTD-CTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNK-IKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIH-SRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 872
            +G+LL+GPPGTGK+ LA+AVA   +  TF  +S S+LV K++GE  ++V+ LF +ARE+ PSIIF+DEIDS+  +R E    N     +R   E L Q+ G    N  I VL ATN   +LD A+ R  R +++I  P P   +R  + K+H     N +   D +++  K +G SGA++  +  +A M  +R+
Sbjct:  168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE----NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 355          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: SPA5L_XENTR (Spermatogenesis-associated protein 5-like protein 1 OS=Xenopus tropicalis GN=spata5l1 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.332e-28
Identity = 74/193 (38.34%), Postives = 109/193 (56.48%), Query Frame = -3
Query:  306 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHA---PSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFAL 875
            PKGVLL GPPG GKTLL +AVA       I +SG  +     GE    +R++F  ARE A   P+++F+DE+D++   R  S S    +   R + +LL  +DG ++ NK+  + AT+R D +D AL RPGR DR++    P  + R  IL++    M   R +D   +A+   G  GA+L A+C +A M A+
Sbjct:  225 PKGVLLIGPPGVGKTLLVKAVAREVGAYVIGLSGPAIHGSRPGESEENLRKIFEKAREAACSGPALLFIDEVDALCPKRGHSNS----APENRVVAQLLTLMDGIDSDNKMVTVAATSRPDAIDPALRRPGRFDREVIIGTPTHKQRQAILEMMISNMPTDRDVDAAALADVTVGYVGADLTALCRDAAMQAV 413          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: FTSHC_ARATH (Cell division protease ftsH homolog 12, chloroplastic OS=Arabidopsis thaliana GN=FTSH12 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 2.332e-28
Identity = 77/228 (33.77%), Postives = 120/228 (52.63%), Query Frame = -3
Query:  216 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDG---------FEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSL 872
            +GVLL GPPGTGKTL AR +A  +   F+  SG+E        G+  + E+F +AR +AP+ +F+DEID+I            D   + T   L+ QLDG         F     +  + ATNR D LD   +R GRIDR++    P+ + R+ I  +HS   NL   ID  K+  +  G SGA+++ +  EA + ++R+ R ++ Q+D    +  V+ K+  + M +
Sbjct:  527 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE-KSGAAKINEMFSIARRNAPAFVFVDEIDAIAGRHARK-----DPRRRATFEALIAQLDGEKEKTGIDRFSLRQAVIFICATNRPDELDLEFVRSGRIDRRLYIGLPDAKQRVQIFGVHSAGKNLAEDIDFGKLVFRTVGFSGADIRNLVNEAAIMSVRKGRSYIYQQD----IVDVLDKQLLEGMGV 744          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: MSP1_CAEEL (Mitochondrial sorting homolog OS=Caenorhabditis elegans GN=mspn-1 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 3.046e-28
Identity = 78/221 (35.29%), Postives = 119/221 (53.85%), Query Frame = -3
Query:  243 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS-NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALR---------ERRIHVTQEDFEMAVAKVMK 875
            P+G+LLYGPPG GKTLLA+AVA    C FI +  S L  K+ GE  ++   +F +A++  P+IIF+DEIDS     +     +          + +   DGF +S ++I V+ ATNR   +D A+LR  R+  + + P PN + R  IL +  R   +   ++L +IA+   G SG++LK VC  A +   +          + + + Q DFE AV K M+
Sbjct:  117 PRGILLYGPPGCGKTLLAKAVARAAGCRFINLQVSNLTDKWYGESQKLAAAVFSVAQKFQPTIIFIDEIDSF----LRDRQSHDHESTAMMKAQFMTLWDGFSSSGDQIIVMGATNRPRDVDAAILR--RMTARFQVPVPNAKQRSQILNVILRNEKINNTVNLGEIAQAAEGLSGSDLKEVCRLALLARAKATVASGGSVNQLLPLEQSDFESAVHKYMR 331          
The following BLAST results are available for this feature:
BLAST of CX069559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 389
Match NameE-valueIdentityDescription
VPS4_SCHPO6.138e-2941.62Suppressor protein of bem1/bed5 double mutants OS=... [more]
PEX6_ASHGO6.138e-2939.79Peroxisomal biogenesis factor 6 OS=Ashbya gossypii... [more]
PEX6_YARLI1.367e-2838.02Peroxisomal biogenesis factor 6 OS=Yarrowia lipoly... [more]
SPAST_BRUMA1.786e-2838.68Probable spastin homolog Bm1_53365 OS=Brugia malay... [more]
PEX6_CANGA1.786e-2837.70Peroxisomal biogenesis factor 6 OS=Candida glabrat... [more]
ATD1A_DANRE1.786e-2835.43ATPase family AAA domain-containing protein 1-A OS... [more]
VPS4B_HUMAN2.332e-2839.18Vacuolar protein sorting-associated protein 4B OS=... [more]
SPA5L_XENTR2.332e-2838.34Spermatogenesis-associated protein 5-like protein ... [more]
FTSHC_ARATH2.332e-2833.77Cell division protease ftsH homolog 12, chloroplas... [more]
MSP1_CAEEL3.046e-2835.29Mitochondrial sorting homolog OS=Caenorhabditis el... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11C09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11C09-F17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069559 ID=CX069559; Name=CX069559; organism=Citrus sinensis; type=EST; length=907bp
CTTGCATGCGAATTTAAATTTAGATAAAATAGATTGCAAATTTGTTTATC
ATAAGAGGCTAGAGCGCAAGAAAAGACAACAGTCAGGCTAAAAGGGCCTA
TCGTGCAAATGTCCCAGAACACGAGTGAGTGCCGTTAAGGACTACTTGAA
TCTTGCTCAGAAAATAAGCAAATACACAGCACAGCACATGGAAATGATTA
CTTCCACAACTTCCGCAAGGACATGTTCTTCTCTGTTTCTTTCTTCATGA
CCTTGGCCACTGCCATCTCAAAATCTTCCTGTGTTACATGGATCCTTCTC
TCTCTTAGAGCAAACATACCGGCTTCTGTGCACACAGCCTTAAGCTCCGC
ACCAGATGCACCATTCATCTTCTCGGCAATCTTCTTCAAATCAATGCCAC
GCATTAAATTCATTCTTCTTGAATGAATTTTTAGGATATCAAGACGAGAC
TCTTCATTAGGATTTGGAAATTCAATCTTTCTGTCAATTCGTCCTGGCCT
GAGAAGAGCTTGATCGAGAATATCAATTCGATTTGTCGCCATGAGAACCT
TAATTTTGTTTGATGCTTCAAATCCATCAAGCTGGTTGAGCAGCTCCAGC
ATAGTCCTCTGCACCTCACTGTCACCATTTCCGCTGCCAGATTCCATTCG
GGCAGATCCGATACTGTCAATTTCATCCATAAAAATGATAGACGGAGCAT
GTTCCCTTGCCATAACAAAAAGTTCTCTAACCATTCTGGAGCCTTCTCCA
ATGTATTTCTGGACTAATTCAGAACCAGAAACCCTGATGAAAGTACAATC
AGTATGATGAGCCACAGCTCTAGCCAACAGTGTTTTGCCAGTACCAGGTG
GTCCATATAGCAATACACCCTTNGGGTTGAGCTATTCCAAGAGACTCGAA
CAATTCG
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