CX069542

Overview
NameCX069542
Unique NameCX069542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069542_ssr667 microsatellite CX069542_ssr667:667..678. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4729 contig Csv1_Contig4729:1..891. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069542 vs. ExPASy Swiss-Prot
Match: STP11_ARATH (Sugar transport protein 11 OS=Arabidopsis thaliana GN=STP11 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.478e-11
Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = -3
Query:    2 GGVTSMEPFLEKFFPEVHRKMKEDT-KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSV 178
            GGV SME FL KFFP+V R+M+    + + YCK+D++LLT FTSSLY+A L ASF+AS++
Sbjct:   46 GGVISMEDFLTKFFPDVLRQMQNKRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTI 105          
BLAST of CX069542 vs. ExPASy Swiss-Prot
Match: STP7_ARATH (Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.930e-11
Identity = 35/59 (59.32%), Postives = 47/59 (79.66%), Query Frame = -3
Query:    2 GGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSV 178
            GGVTSM+ FLE+FF  V+ K K+  + SNYCK+D+Q L +FTSSLY+AGLV++ VAS +
Sbjct:   49 GGVTSMDEFLEEFFHTVYEKKKQAHE-SNYCKYDNQGLAAFTSSLYLAGLVSTLVASPI 106          
BLAST of CX069542 vs. ExPASy Swiss-Prot
Match: STP2_ARATH (Sugar transport protein 2 OS=Arabidopsis thaliana GN=STP2 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.930e-11
Identity = 36/59 (61.02%), Postives = 43/59 (72.88%), Query Frame = -3
Query:    2 GGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSV 178
            GGVTSM+ FL  FFP V+ K K     +NYCKFD QLL  FTSSLY+AG+ ASF++S V
Sbjct:   45 GGVTSMDTFLLDFFPHVYEK-KHRVHENNYCKFDDQLLQLFTSSLYLAGIFASFISSYV 102          
BLAST of CX069542 vs. ExPASy Swiss-Prot
Match: STP14_ARATH (Sugar transport protein 14 OS=Arabidopsis thaliana GN=STP14 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.930e-11
Identity = 31/59 (52.54%), Postives = 47/59 (79.66%), Query Frame = -3
Query:    2 GGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSV 178
            GGVTSM+ FL++FFP ++++ +     ++YCK+D+Q+LT FTSSLY AGL+++F AS V
Sbjct:   48 GGVTSMDDFLKEFFPGIYKRKQMHLNETDYCKYDNQILTLFTSSLYFAGLISTFGASYV 106          
BLAST of CX069542 vs. ExPASy Swiss-Prot
Match: STP8_ARATH (Sugar transport protein 8 OS=Arabidopsis thaliana GN=STP8 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.334e-11
Identity = 33/58 (56.90%), Postives = 45/58 (77.59%), Query Frame = -3
Query:    5 GGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASS 178
            GGVT+M+ FL++FFP V+ + K   + +NYCK+D+Q L  FTSSLY+A LVASF AS+
Sbjct:   44 GGVTAMDDFLKEFFPSVYERKKHAHE-NNYCKYDNQFLQLFTSSLYLAALVASFFASA 100          
The following BLAST results are available for this feature:
BLAST of CX069542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
STP11_ARATH1.478e-1158.33Sugar transport protein 11 OS=Arabidopsis thaliana... [more]
STP7_ARATH1.930e-1159.32Sugar transport protein 7 OS=Arabidopsis thaliana ... [more]
STP2_ARATH1.930e-1161.02Sugar transport protein 2 OS=Arabidopsis thaliana ... [more]
STP14_ARATH1.930e-1152.54Sugar transport protein 14 OS=Arabidopsis thaliana... [more]
STP8_ARATH7.334e-1156.90Sugar transport protein 8 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11B09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11B09-D17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069542 ID=CX069542; Name=CX069542; organism=Citrus sinensis; type=EST; length=891bp
TGACAGAGGAGGCGACGAAGGAAGCAACCAGGCCAGCAACATAGAGAGAG
GACGTGAAGGAGGTCAATAGTTGACTGTCAAATTTGCAGTAGTTGCTAAT
CTTTGTGTCTTCTTTCATCTTTCTGTGCACTTCCGGAAAGAATTTCTCCA
AAAATGGCTCCATTGATGTCACCCCACCTTCACATTTACTTTCACAAATC
AGTGCATCCTTTCGTCGAGTTAAATTTTTACAAACAACAAGGGCTCAAGT
GATAGAAACCGTTTATTTTACAGTTTTTTCAATTATCTAATCATTTTATG
TTTTGTTTTTCTCCTTGTCGGATACTTCTAACGTGCCAACAATTGGCAAT
TGTCTTAAGTCTTTTAGCAATTGTTGTCCACCATTTGTGCATGTCAATAT
CACGCCAAGCAATCCACGTGAAACCATTTAAATTTTCTTTCCTGTAAAAT
TGAATCTTTAATCATGTTGATTGAAATTAAAATTATCATCAACATGATCA
AATCTTCATCTTTATAAGTCGAATTTGGATGACTAATCAAGCAAACAGGT
ACTAAAAGCCACTCAATATTCTCTTTATTTTTTACTCATCTTTTAGATTA
AAATTACCATCATCGTTCCAATATACATTTAATGAATTGACATATTACAT
AATGCAAAGATAGTACCAAACAAACAAAATTAATGCAGAGAAGTGATATT
TTTATATAGCAAGAAGCACCAAGGAAAGAGATAGAATTAAAGAAATGAAC
AGACCTGAAATTCCAATATCGTAGCCAAAAATAACCCCTCCCATGCCAGC
CATCATACAAGACAAAATAACGAACGCAGTTATCTTCCCATTGTATATAT
TATTATCACCACCTTCACTTGCTATCGCCATCCCTGCTGCC
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