CX069539

Overview
NameCX069539
Unique NameCX069539
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069539 vs. ExPASy Swiss-Prot
Match: ISU1_SCHPO (Iron sulfur cluster assembly protein 1, mitochondrial OS=Schizosaccharomyces pombe GN=isu1 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.227e-22
Identity = 54/77 (70.13%), Postives = 59/77 (76.62%), Query Frame = -3
Query:  369 KSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 599
            K G I D  FKTFGCGSAIASSS  T  VKG  +EE   IKNT+IAK L LPPVKLHCSMLAEDAIK+AVK Y +K+
Sbjct:  100 KDGVIEDVKFKTFGCGSAIASSSYVTTMVKGMTLEEASKIKNTQIAKELCLPPVKLHCSMLAEDAIKSAVKHYRSKQ 176          
BLAST of CX069539 vs. ExPASy Swiss-Prot
Match: NIFU_AZOVI (Nitrogen fixation protein nifU OS=Azotobacter vinelandii GN=nifU PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.237e-15
Identity = 40/73 (54.79%), Postives = 54/73 (73.97%), Query Frame = -3
Query:  372 IVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDYEAK 587
            I+DA F+TFGCGSAIASSS  TE VKG  ++E L I N +IA +L  LPP K+HCS++  +A++AAV +Y  +
Sbjct:   52 ILDAGFQTFGCGSAIASSSALTEMVKGLTLDEALKISNQDIADYLDGLPPEKMHCSVMGREALQAAVANYRGE 124          
BLAST of CX069539 vs. ExPASy Swiss-Prot
Match: NIFU_ANASP (Nitrogen fixation protein nifU OS=Anabaena sp. (strain PCC 7120) GN=nifU PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.972e-14
Identity = 36/74 (48.65%), Postives = 55/74 (74.32%), Query Frame = -3
Query:  381 KSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDY 599
            +S +IVD+ F+TFGC SAIASSS  TE +KG  ++E L + N +IA +L  LP  K+HCS++ ++A++AA+ +Y
Sbjct:   54 ESDKIVDSRFQTFGCTSAIASSSALTEMIKGLTLDEALKVSNKDIADYLGGLPEAKMHCSVMGQEALEAAIYNY 127          
BLAST of CX069539 vs. ExPASy Swiss-Prot
Match: NIFU_ANAAZ (Nitrogen fixation protein nifU OS=Anabaena azollae GN=nifU PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.972e-14
Identity = 36/74 (48.65%), Postives = 55/74 (74.32%), Query Frame = -3
Query:  381 KSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDY 599
            +S +IVD+ F+TFGC SAIASSS  TE +KG  ++E L + N +IA +L  LP  K+HCS++ ++A++AA+ +Y
Sbjct:   54 ESDKIVDSRFQTFGCTSAIASSSALTEMIKGLTLDEALKVSNKDIADYLGGLPEAKMHCSVMGQEALEAAIYNY 127          
BLAST of CX069539 vs. ExPASy Swiss-Prot
Match: NIFU_AZOCH (Nitrogen fixation protein nifU OS=Azotobacter chroococcum mcd 1 GN=nifU PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.957e-13
Identity = 37/73 (50.68%), Postives = 51/73 (69.86%), Query Frame = -3
Query:  372 IVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLS-LPPVKLHCSMLAEDAIKAAVKDYEAK 587
            I+DA F+TFGCGSAIASSS  TE VKG  +++ L I N +IA  L  LP  K+HCS++  + ++AAV +Y  +
Sbjct:   52 ILDAGFQTFGCGSAIASSSALTEMVKGADLDDALKISNRDIAHFLGRLPREKMHCSVMGRERLQAAVANYRGE 124          
BLAST of CX069539 vs. ExPASy Swiss-Prot
Match: NIFU_KLEPN (Nitrogen fixation protein nifU OS=Klebsiella pneumoniae GN=nifU PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 9.746e-12
Identity = 34/73 (46.58%), Postives = 51/73 (69.86%), Query Frame = -3
Query:  372 IVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDYEAK 587
            I +A F+TFGCGSAIASSS  TE + G  + E   I N +IA +L  LPP K+HCS++ ++A++AA+ ++  +
Sbjct:   52 IEEAGFQTFGCGSAIASSSALTELIIGHTLAEAGQITNQQIADYLDGLPPEKMHCSVMGQEALRAAIANFRGE 124          
BLAST of CX069539 vs. ExPASy Swiss-Prot
Match: NIFU_AQUAE (NifU-like protein OS=Aquifex aeolicus GN=nifU PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.273e-11
Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = -3
Query:  369 IVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDYEAKR 587
            I D  FKTFGCGSAIA SS+ TE VKGK ++  L++   +I + L  LPP K+HC+ L  + +  A+KDY  K+
Sbjct:   53 IEDVRFKTFGCGSAIAVSSMLTEMVKGKPIQYALNLTYKDIFEELGGLPPQKIHCTNLGLETLHVAIKDYLMKQ 126          
The following BLAST results are available for this feature:
BLAST of CX069539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
ISU1_SCHPO1.227e-2270.13Iron sulfur cluster assembly protein 1, mitochondr... [more]
NIFU_AZOVI3.237e-1554.79Nitrogen fixation protein nifU OS=Azotobacter vine... [more]
NIFU_ANASP7.972e-1448.65Nitrogen fixation protein nifU OS=Anabaena sp. (st... [more]
NIFU_ANAAZ7.972e-1448.65Nitrogen fixation protein nifU OS=Anabaena azollae... [more]
NIFU_AZOCH3.957e-1350.68Nitrogen fixation protein nifU OS=Azotobacter chro... [more]
NIFU_KLEPN9.746e-1246.58Nitrogen fixation protein nifU OS=Klebsiella pneum... [more]
NIFU_AQUAE1.273e-1148.65NifU-like protein OS=Aquifex aeolicus GN=nifU PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11B06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11B06-D11-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069539 ID=CX069539; Name=CX069539; organism=Citrus sinensis; type=EST; length=604bp
TTTTTTTTTTTTTTTTAGTAGAAACATCATTATTTTCCTCCGTCGCCACA
CCATCGTGCGCAGAGAATCAACAAAATTTGAACAACATAATTAAAACAAA
CTTAGAACCATGCAGAGGATCACACTCTCAGTGGTTCAGTTACACACGCA
CAATTCAGATTCATAATGTACAAAATGGCAGTTCTAATTAATAACCATTA
ACCCTTGCACCACCTGCCATGTACCATCAATATTAGGATTTGCAGTGTCC
CTGATACACCTTCCACAAGTAGCACATTAACATCATTTTTCAAATGTTTT
CATCAACATCTTCAAGCATCGGCAGCCTTCTCTGCAGGAGCTGCCTCTGA
GGCGGCACTTGATTTGGTACGTTTAGCTTCGTAATCTTTTACAGCAGCCT
TGATAGCATCTTCAGCAAGCATGCTACAATGCAGCTTAACCGGTGGTAGA
GAAAGATGTTTTGCAATTTCCGTGTTCTTAATGGACAAAACTTCCTCCAT
CTGCTTCCCTTTCACCCATTCTGTGGCAACAGATGATGAGGCGATGGCAG
AGCCACAACCGAAGGTCTTGAAGCAGGCGTCGACGATCTGACCACTCTTT
TCAT
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