CX069538
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX069538 vs. ExPASy Swiss-Prot
Match: ATG8L_DICDI (Autophagy-related protein 8-like protein DDB_G0290491 OS=Dictyostelium discoideum GN=DDB_G0290491 PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 7.711e-30 Identity = 64/122 (52.46%), Postives = 91/122 (74.59%), Query Frame = -1 Query: 92 AMAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLS---AEKAIFVFV-KNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 445 A+ SFK E+ LE+R S++IR +Y DR+P+IVE+A +DVPDI+KKK+L P+++ + F+ +RK + S +KAIF+FV KN LPP+ L+S+IY+ +KDEDGFLY+ YSGENTFG Sbjct: 2 ALLSKSFKQEYSLEKRKLISSKIRNRYKDRLPIIVERAANSDVPDINKKKFLAPSNMVITNFIMEIRKHLDDSDHNEQKAIFLFVNKNNLPPSSQLLSSIYDAHKDEDGFLYICYSGENTFG 123
BLAST of CX069538 vs. ExPASy Swiss-Prot
Match: ATG8H_ARATH (Autophagy-related protein 8h OS=Arabidopsis thaliana GN=ATG8H PE=2 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 7.711e-30 Identity = 62/113 (54.87%), Postives = 81/113 (71.68%), Query Frame = -1 Query: 92 SFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 430 SFK + + RL ES I KYPDRIPVI+EK D+PD++K KYLVP D++VG F++++ KR++L KA+FVFV NTLP T + M ++Y K+EDGFLYM YS E TFG Sbjct: 7 SFKDQFSSDERLKESNNIIAKYPDRIPVIIEKYSNADLPDMEKNKYLVPRDMTVGHFIHMLSKRMQLDPSKALFVFVHNTLPQTASRMDSLYNTFKEEDGFLYMCYSTEKTFG 119
BLAST of CX069538 vs. ExPASy Swiss-Prot
Match: MLP3C_HUMAN (Microtubule-associated proteins 1A/1B light chain 3C OS=Homo sapiens GN=MAP1LC3C PE=1 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 5.539e-20 Identity = 51/114 (44.74%), Postives = 76/114 (66.67%), Query Frame = -1 Query: 92 FKLEHPLERRLAESARIREKYPDRIPVIVEK-AEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKN-TLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 427 FK L R E A IR K+P++IPV+VE+ +T +P +DK K+LVP +L++ QF+ ++R R+ L A +A ++ V N +L A M+ IY + KDEDGF+YMTY+ + TFG Sbjct: 13 FKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 126
BLAST of CX069538 vs. ExPASy Swiss-Prot
Match: RRFC_SPIOL (Ribosome-recycling factor, chloroplastic OS=Spinacia oleracea GN=RRF PE=1 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 7.234e-20 Identity = 47/53 (88.68%), Postives = 53/53 (100.00%), Query Frame = 1 Query: 592 QVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 750 +VAVRNIRRDALK+YEKL+KEKKLSEDNVKDLS+DLQKLTDEYMKK++SIYKQ Sbjct: 211 KVAVRNIRRDALKSYEKLEKEKKLSEDNVKDLSADLQKLTDEYMKKVESIYKQ 263
BLAST of CX069538 vs. ExPASy Swiss-Prot
Match: MLP3B_HUMAN (Microtubule-associated proteins 1A/1B light chain 3B OS=Homo sapiens GN=MAP1LC3B PE=1 SV=3) HSP 1 Score: 93.9745 bits (232), Expect = 1.045e-18 Identity = 46/119 (38.66%), Postives = 79/119 (66.39%), Query Frame = -1 Query: 92 AKSSFKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVK-NTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 439 ++ +FK E+R+ + IRE++P +IPVI+E K EK +P +DK K+LVP +++ + + ++R+R++L+A +A F+ V +++ +S +YE KDEDGFLYM Y+ + TFG Sbjct: 3 SEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120
BLAST of CX069538 vs. ExPASy Swiss-Prot
Match: MLP3B_RAT (Microtubule-associated proteins 1A/1B light chain 3B OS=Rattus norvegicus GN=Map1lc3b PE=1 SV=3) HSP 1 Score: 92.8189 bits (229), Expect = 2.327e-18 Identity = 45/119 (37.82%), Postives = 79/119 (66.39%), Query Frame = -1 Query: 92 AKSSFKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVK-NTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 439 ++ +FK E+R+ + IRE++P +IPVI+E K EK +P +DK K+LVP +++ + + ++R+R++L+A +A F+ V +++ +S +YE +DEDGFLYM Y+ + TFG Sbjct: 3 SEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 120
BLAST of CX069538 vs. ExPASy Swiss-Prot
Match: MLP3B_MOUSE (Microtubule-associated proteins 1A/1B light chain 3B OS=Mus musculus GN=Map1lc3b PE=1 SV=3) HSP 1 Score: 92.8189 bits (229), Expect = 2.327e-18 Identity = 45/119 (37.82%), Postives = 79/119 (66.39%), Query Frame = -1 Query: 92 AKSSFKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVK-NTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 439 ++ +FK E+R+ + IRE++P +IPVI+E K EK +P +DK K+LVP +++ + + ++R+R++L+A +A F+ V +++ +S +YE +DEDGFLYM Y+ + TFG Sbjct: 3 SEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 120
BLAST of CX069538 vs. ExPASy Swiss-Prot
Match: MLP3B_BOVIN (Microtubule-associated proteins 1A/1B light chain 3B OS=Bos taurus GN=MAP1LC3B PE=1 SV=4) HSP 1 Score: 92.0485 bits (227), Expect = 3.969e-18 Identity = 45/119 (37.82%), Postives = 78/119 (65.55%), Query Frame = -1 Query: 92 AKSSFKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVK-NTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 439 ++ +FK E+R+ + IRE++P +IPVI+E K EK +P +DK K+LVP +++ + + ++R+R++L+A +A F+ V +++ + +YE KDEDGFLYM Y+ + TFG Sbjct: 3 SEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 120
BLAST of CX069538 vs. ExPASy Swiss-Prot
Match: RRFC_ORYSJ (Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0570700 PE=2 SV=2) HSP 1 Score: 91.6633 bits (226), Expect = 5.184e-18 Identity = 43/53 (81.13%), Postives = 52/53 (98.11%), Query Frame = 1 Query: 592 QVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 750 +VA+RNIRRDA+KAY+KL+KEKKLSEDNVKDLS+DLQK+TDEYMKKI++I KQ Sbjct: 206 KVAIRNIRRDAIKAYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIEAIQKQ 258
BLAST of CX069538 vs. ExPASy Swiss-Prot
Match: RRFC_ORYSI (Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_26546 PE=1 SV=2) HSP 1 Score: 91.6633 bits (226), Expect = 5.184e-18 Identity = 43/53 (81.13%), Postives = 52/53 (98.11%), Query Frame = 1 Query: 592 QVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 750 +VA+RNIRRDA+KAY+KL+KEKKLSEDNVKDLS+DLQK+TDEYMKKI++I KQ Sbjct: 206 KVAIRNIRRDAIKAYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIEAIQKQ 258 The following BLAST results are available for this feature:
BLAST of CX069538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 88
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069538 ID=CX069538; Name=CX069538; organism=Citrus sinensis; type=EST; length=796bpback to top |