CX069538

Overview
NameCX069538
Unique NameCX069538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069538_ssr528 microsatellite CX069538_ssr528:528..547. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4289 contig Csv1_Contig4289:142..938. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069538 vs. ExPASy Swiss-Prot
Match: ATG8L_DICDI (Autophagy-related protein 8-like protein DDB_G0290491 OS=Dictyostelium discoideum GN=DDB_G0290491 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.711e-30
Identity = 64/122 (52.46%), Postives = 91/122 (74.59%), Query Frame = -1
Query:   92 AMAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLS---AEKAIFVFV-KNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 445
            A+   SFK E+ LE+R   S++IR +Y DR+P+IVE+A  +DVPDI+KKK+L P+++ +  F+  +RK +  S    +KAIF+FV KN LPP+  L+S+IY+ +KDEDGFLY+ YSGENTFG
Sbjct:    2 ALLSKSFKQEYSLEKRKLISSKIRNRYKDRLPIIVERAANSDVPDINKKKFLAPSNMVITNFIMEIRKHLDDSDHNEQKAIFLFVNKNNLPPSSQLLSSIYDAHKDEDGFLYICYSGENTFG 123          
BLAST of CX069538 vs. ExPASy Swiss-Prot
Match: ATG8H_ARATH (Autophagy-related protein 8h OS=Arabidopsis thaliana GN=ATG8H PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.711e-30
Identity = 62/113 (54.87%), Postives = 81/113 (71.68%), Query Frame = -1
Query:   92 SFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 430
            SFK +   + RL ES  I  KYPDRIPVI+EK    D+PD++K KYLVP D++VG F++++ KR++L   KA+FVFV NTLP T + M ++Y   K+EDGFLYM YS E TFG
Sbjct:    7 SFKDQFSSDERLKESNNIIAKYPDRIPVIIEKYSNADLPDMEKNKYLVPRDMTVGHFIHMLSKRMQLDPSKALFVFVHNTLPQTASRMDSLYNTFKEEDGFLYMCYSTEKTFG 119          
BLAST of CX069538 vs. ExPASy Swiss-Prot
Match: MLP3C_HUMAN (Microtubule-associated proteins 1A/1B light chain 3C OS=Homo sapiens GN=MAP1LC3C PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.539e-20
Identity = 51/114 (44.74%), Postives = 76/114 (66.67%), Query Frame = -1
Query:   92 FKLEHPLERRLAESARIREKYPDRIPVIVEK-AEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKN-TLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 427
            FK    L  R  E A IR K+P++IPV+VE+   +T +P +DK K+LVP +L++ QF+ ++R R+ L A +A ++ V N +L    A M+ IY + KDEDGF+YMTY+ + TFG
Sbjct:   13 FKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 126          
BLAST of CX069538 vs. ExPASy Swiss-Prot
Match: RRFC_SPIOL (Ribosome-recycling factor, chloroplastic OS=Spinacia oleracea GN=RRF PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.234e-20
Identity = 47/53 (88.68%), Postives = 53/53 (100.00%), Query Frame = 1
Query:  592 QVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 750
            +VAVRNIRRDALK+YEKL+KEKKLSEDNVKDLS+DLQKLTDEYMKK++SIYKQ
Sbjct:  211 KVAVRNIRRDALKSYEKLEKEKKLSEDNVKDLSADLQKLTDEYMKKVESIYKQ 263          
BLAST of CX069538 vs. ExPASy Swiss-Prot
Match: MLP3B_HUMAN (Microtubule-associated proteins 1A/1B light chain 3B OS=Homo sapiens GN=MAP1LC3B PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 1.045e-18
Identity = 46/119 (38.66%), Postives = 79/119 (66.39%), Query Frame = -1
Query:   92 AKSSFKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVK-NTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 439
            ++ +FK     E+R+ +   IRE++P +IPVI+E  K EK  +P +DK K+LVP  +++ + + ++R+R++L+A +A F+ V  +++      +S +YE  KDEDGFLYM Y+ + TFG
Sbjct:    3 SEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120          
BLAST of CX069538 vs. ExPASy Swiss-Prot
Match: MLP3B_RAT (Microtubule-associated proteins 1A/1B light chain 3B OS=Rattus norvegicus GN=Map1lc3b PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 2.327e-18
Identity = 45/119 (37.82%), Postives = 79/119 (66.39%), Query Frame = -1
Query:   92 AKSSFKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVK-NTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 439
            ++ +FK     E+R+ +   IRE++P +IPVI+E  K EK  +P +DK K+LVP  +++ + + ++R+R++L+A +A F+ V  +++      +S +YE  +DEDGFLYM Y+ + TFG
Sbjct:    3 SEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 120          
BLAST of CX069538 vs. ExPASy Swiss-Prot
Match: MLP3B_MOUSE (Microtubule-associated proteins 1A/1B light chain 3B OS=Mus musculus GN=Map1lc3b PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 2.327e-18
Identity = 45/119 (37.82%), Postives = 79/119 (66.39%), Query Frame = -1
Query:   92 AKSSFKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVK-NTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 439
            ++ +FK     E+R+ +   IRE++P +IPVI+E  K EK  +P +DK K+LVP  +++ + + ++R+R++L+A +A F+ V  +++      +S +YE  +DEDGFLYM Y+ + TFG
Sbjct:    3 SEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 120          
BLAST of CX069538 vs. ExPASy Swiss-Prot
Match: MLP3B_BOVIN (Microtubule-associated proteins 1A/1B light chain 3B OS=Bos taurus GN=MAP1LC3B PE=1 SV=4)

HSP 1 Score: 92.0485 bits (227), Expect = 3.969e-18
Identity = 45/119 (37.82%), Postives = 78/119 (65.55%), Query Frame = -1
Query:   92 AKSSFKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVK-NTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 439
            ++ +FK     E+R+ +   IRE++P +IPVI+E  K EK  +P +DK K+LVP  +++ + + ++R+R++L+A +A F+ V  +++      +  +YE  KDEDGFLYM Y+ + TFG
Sbjct:    3 SEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 120          
BLAST of CX069538 vs. ExPASy Swiss-Prot
Match: RRFC_ORYSJ (Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0570700 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.184e-18
Identity = 43/53 (81.13%), Postives = 52/53 (98.11%), Query Frame = 1
Query:  592 QVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 750
            +VA+RNIRRDA+KAY+KL+KEKKLSEDNVKDLS+DLQK+TDEYMKKI++I KQ
Sbjct:  206 KVAIRNIRRDAIKAYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIEAIQKQ 258          
BLAST of CX069538 vs. ExPASy Swiss-Prot
Match: RRFC_ORYSI (Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_26546 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.184e-18
Identity = 43/53 (81.13%), Postives = 52/53 (98.11%), Query Frame = 1
Query:  592 QVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 750
            +VA+RNIRRDA+KAY+KL+KEKKLSEDNVKDLS+DLQK+TDEYMKKI++I KQ
Sbjct:  206 KVAIRNIRRDAIKAYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIEAIQKQ 258          
The following BLAST results are available for this feature:
BLAST of CX069538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
ATG8L_DICDI7.711e-3052.46Autophagy-related protein 8-like protein DDB_G0290... [more]
ATG8H_ARATH7.711e-3054.87Autophagy-related protein 8h OS=Arabidopsis thalia... [more]
MLP3C_HUMAN5.539e-2044.74Microtubule-associated proteins 1A/1B light chain ... [more]
RRFC_SPIOL7.234e-2088.68Ribosome-recycling factor, chloroplastic OS=Spinac... [more]
MLP3B_HUMAN1.045e-1838.66Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_RAT2.327e-1837.82Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_MOUSE2.327e-1837.82Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_BOVIN3.969e-1837.82Microtubule-associated proteins 1A/1B light chain ... [more]
RRFC_ORYSJ5.184e-1881.13Ribosome-recycling factor, chloroplastic OS=Oryza ... [more]
RRFC_ORYSI5.184e-1881.13Ribosome-recycling factor, chloroplastic OS=Oryza ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11B05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11B05-D9-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069538 ID=CX069538; Name=CX069538; organism=Citrus sinensis; type=EST; length=796bp
TCTGGGAATGGCTTAAAAGGGATCAACTGAGAATATACAACTTTCAAATT
TTATGATACATGGCTTGTTGCCTTCGCTCTTAAAATGACCAACCGAAGGT
ATTCTCTCCACTGTAAGTCATGTAAAGAAAACCATCTTCATCCTTGTTTT
CCTCATATATAGCAGACATCAAGGCACCGGTTGGAGGTAAAGTATTCTTA
ACAAAAACAAATATGGCCTTTTCTGCACTGAGCTTAATCCTTTTACGGAC
AACATAAACAAATTGTCCCACAGATAAATCCGCTGGGACAAGGTATTTTT
TCTTGTCAATGTCAGGAACATCAGTCTTCTCAGCCTTCTCCACAATCACC
GGAATCCTGTCAGGATACTTCTCTCTAATGCGAGCAGATTCTGCCAGCCT
CCTCTCCAATGGATGCTCGAGCTTGAATGAACTTTTGGCCATGGCGAAAC
TGACGCTACGATGACTCTTCAACACGACACGAGAAGTGGATCGGGAAGAG
AAGGAAATTATTAGGGTTTCAAGGTATTTGATTGATTGATTGATTGATCG
GTTGATTGTGGCTTTGCTGCACTGCCCCCATCAATCATTTGCAGGTGGCA
GTTAGGAATATAAGAAGAGATGCGTTAAAAGCTTATGAAAAACTTCAGAA
GGAGAAGAAGCTCTCTGAAGACAATGTGAAGGACTTGTCAAGTGATTTAC
AGAAACTAACAGATGAGTATATGAAGAAGATTGATAGCATCTACAAACAG
AAAGAGAAGGAGTTGTTGAAAGTTTAATGATTGTTTACACACAAAT
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