CX069537

Overview
NameCX069537
Unique NameCX069537
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069537_ssr390 microsatellite CX069537_ssr390:390..409. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4289 contig Csv1_Contig4289:1..886. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: GBRL1_BOVIN (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Bos taurus GN=GABARAPL1 PE=3 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 1.235e-34
Identity = 67/115 (58.26%), Postives = 87/115 (75.65%), Query Frame = 1
Query:  502 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 846
            K  +K +HP E R  E  +IR+KYPDR+PVIVEKA K  VPD+DK+KYLVP+DL+VGQF +++RKRI L  E A+F FV NT+PPT A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: GBRAP_RAT (Gamma-aminobutyric acid receptor-associated protein OS=Rattus norvegicus GN=Gabarap PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.695e-34
Identity = 66/115 (57.39%), Postives = 88/115 (76.52%), Query Frame = 1
Query:  502 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 846
            K  +K EHP E+R +E  +IR+KYPDR+PVIVEKA K  + D+DKKKYLVP+DL+VGQF +++RKRI L AE A+F FV N +PPT A M  +Y+E+ +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: GBRAP_RABIT (Gamma-aminobutyric acid receptor-associated protein OS=Oryctolagus cuniculus GN=GABARAP PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.695e-34
Identity = 66/115 (57.39%), Postives = 88/115 (76.52%), Query Frame = 1
Query:  502 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 846
            K  +K EHP E+R +E  +IR+KYPDR+PVIVEKA K  + D+DKKKYLVP+DL+VGQF +++RKRI L AE A+F FV N +PPT A M  +Y+E+ +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: GBRAP_MOUSE (Gamma-aminobutyric acid receptor-associated protein OS=Mus musculus GN=Gabarap PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 4.695e-34
Identity = 66/115 (57.39%), Postives = 88/115 (76.52%), Query Frame = 1
Query:  502 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 846
            K  +K EHP E+R +E  +IR+KYPDR+PVIVEKA K  + D+DKKKYLVP+DL+VGQF +++RKRI L AE A+F FV N +PPT A M  +Y+E+ +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: GBRAP_HUMAN (Gamma-aminobutyric acid receptor-associated protein OS=Homo sapiens GN=GABARAP PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.695e-34
Identity = 66/115 (57.39%), Postives = 88/115 (76.52%), Query Frame = 1
Query:  502 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 846
            K  +K EHP E+R +E  +IR+KYPDR+PVIVEKA K  + D+DKKKYLVP+DL+VGQF +++RKRI L AE A+F FV N +PPT A M  +Y+E+ +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: GBRAP_BOVIN (Gamma-aminobutyric acid receptor-associated protein OS=Bos taurus GN=GABARAP PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 4.695e-34
Identity = 66/115 (57.39%), Postives = 88/115 (76.52%), Query Frame = 1
Query:  502 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 846
            K  +K EHP E+R +E  +IR+KYPDR+PVIVEKA K  + D+DKKKYLVP+DL+VGQF +++RKRI L AE A+F FV N +PPT A M  +Y+E+ +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: ATG8I_ARATH (Autophagy-related protein 8i OS=Arabidopsis thaliana GN=ATG8I PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.132e-34
Identity = 70/113 (61.95%), Postives = 86/113 (76.11%), Query Frame = 1
Query:  508 SFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 846
            SFK ++ L+ RLAES  I  KYP RIPVI EK  KTD+P I+KKK+LVP D+SVGQF+Y++  R+ LS  KA+FVFV NTLP T ALM ++YE  KD+DGF+YM YS E TFG
Sbjct:    3 SFKEQYTLDERLAESREIIAKYPTRIPVIAEKYCKTDLPAIEKKKFLVPRDMSVGQFIYILSARLHLSPGKALFVFVNNTLPQTAALMDSVYESYKDDDGFVYMCYSSEKTFG 115          
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: GBRL3_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 3 OS=Homo sapiens GN=GABARAPL3 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.739e-32
Identity = 63/115 (54.78%), Postives = 84/115 (73.04%), Query Frame = 1
Query:  502 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 846
            K  +K  HP E R  E  +IR+KYPDR+P+IVEKA K  VPD+D++KYLVP+DL+ GQF  ++RKRI L  E A+F FV NT+PPT A M  +YE++ +ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEVHPFEYRKKEGEKIRKKYPDRVPLIVEKAPKARVPDLDRRKYLVPSDLTDGQFYLLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDSHEEDDFLYVAYSNESVYG 116          
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: LGG1_CAEEL (Protein lgg-1 OS=Caenorhabditis elegans GN=lgg-1 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.113e-30
Identity = 62/115 (53.91%), Postives = 86/115 (74.78%), Query Frame = 1
Query:  502 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 846
            K ++K E+  E+R AE  +IR KYPDRIPVIVEKA K+ + D+DKKKYLVP+DL+VGQF +++RKRI+L  E A+F FV N +P T   M  +Y+++ +ED FLY+ YS E+ +G
Sbjct:    2 KWAYKEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQFYFLIRKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG 116          
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: ATG8D_ORYSJ (Autophagy-related protein 8D OS=Oryza sativa subsp. japonica GN=ATG8D PE=3 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 7.015e-30
Identity = 64/118 (54.24%), Postives = 84/118 (71.19%), Query Frame = 1
Query:  496 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDE-DGFLYMTYSGENTFG 846
            M    FK E  LE R  ESA +   YPDRIPVIVEK  ++++P+++K+KYLVP ++ VGQF++++R R+ LS   A+FVFV NTLP T  LM ++YE  KDE DGFLY+ YS E TFG
Sbjct:    1 MKPRPFKEEFTLEERAKESAAMIASYPDRIPVIVEKFSRSNLPEMEKRKYLVPCNMPVGQFIFILRSRLHLSPGTALFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 118          
The following BLAST results are available for this feature:
BLAST of CX069537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GBRL1_BOVIN1.235e-3458.26Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_RAT4.695e-3457.39Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_RABIT4.695e-3457.39Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_MOUSE4.695e-3457.39Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_HUMAN4.695e-3457.39Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_BOVIN4.695e-3457.39Gamma-aminobutyric acid receptor-associated protei... [more]
ATG8I_ARATH6.132e-3461.95Autophagy-related protein 8i OS=Arabidopsis thalia... [more]
GBRL3_HUMAN5.739e-3254.78Gamma-aminobutyric acid receptor-associated protei... [more]
LGG1_CAEEL4.113e-3053.91Protein lgg-1 OS=Caenorhabditis elegans GN=lgg-1 P... [more]
ATG8D_ORYSJ7.015e-3054.24Autophagy-related protein 8D OS=Oryza sativa subsp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11B05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11B05-D9-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069537 ID=CX069537; Name=CX069537; organism=Citrus sinensis; type=EST; length=885bp
CTTTTTTTAACTAATTTCCACATTTCATTTCATAACAAAATATCCACCCG
TGTCTCCCATTAGTATCAAAAAATGCCATTCTATGGGCAAACCAAAAAAT
AAAGAGTGCATTCTGAGATTCACTAGAGAGCTCACCATTACATTTGTGTG
TAAACAATCATTAAACCTTCAACAACTCCTTCTCTTTCTGTTTGTAGATG
CTATCAATCTTCTTCATATACTCATCTGTTAGTTTCTGTAAATCACTTGA
CAAGTCCTTCACATTGTCTTCAGAGAGCTTCTTCTCCTTCTGAAGTTTTT
CATAAGCTTTTAACGCATCTCTTCTTATATTCCTAACTGCCACCTGCAAA
TGATTGATGGGGGCAGTGCAGCAAAGCCACAATCAACCGATCAATCAATC
AATCAATCAAATACCTTGAAACCCTAATAATTTCCTTCTCTTCCCGATCC
ACTTCTCGTGTCGTGTTGAAGAGTCATCGTAGCGTCAGTTTCGCCATGGC
CAAAAGTTCATTCAAGCTCGAGCATCCATTGGAGAGGAGGCTGGCAGAAT
CTGCTCGCATTAGAGAGAAGTATCCTGACAGGATTCCGGTGATTGTGGAG
AAGGCTGAGAAGACTGATGTTCCTGACATTGACAAGAAAAAATACCTTGT
CCCAGCGGATTTATCTGTGGGACAATTTGTTTATGTTGTCCGTAAAAGGA
TTAAGCTCAGTGCAGAAAAGGCCATATTTGTTTTTGTTAAGAATACTTTA
CCTCCAACCGGTGCCTTGATGTCTGCTATATATGAGGAAAACAAGGATGA
AGATGGTTTTCTTTACATGACTTACAGTGGAGAGAATACCTTCGGTTGGT
CATTTTAAGAGCGAAGGCAACAAGCCATGTATCAT
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