CX069537

Overview
NameCX069537
Unique NameCX069537
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069537_ssr390 microsatellite CX069537_ssr390:390..409. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4289 contig Csv1_Contig4289:1..886. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: RRFC_DAUCA (Ribosome-recycling factor, chloroplastic (Fragment) OS=Daucus carota GN=RRF PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.045e-17
Identity = 42/53 (79.25%), Postives = 52/53 (98.11%), Query Frame = -3
Query:  188 QVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 346
            +VA+RNIRRDA+K+Y+KL+KEKKLSEDNVKDLSSDLQK+ DEY+KK+DSI+KQ
Sbjct:  167 KVALRNIRRDAIKSYDKLEKEKKLSEDNVKDLSSDLQKVIDEYIKKVDSIFKQ 219          
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: MP3B2_HUMAN (Microtubule-associated proteins 1A/1B light chain 3 beta 2 OS=Homo sapiens GN=MAP1LC3B2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.372e-17
Identity = 45/119 (37.82%), Postives = 78/119 (65.55%), Query Frame = 1
Query:  499 AKSSFKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVK-NTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 846
            ++ +FK     E+R+ +   IRE++P +IPVI+E  K EK  +P +DK K+LVP  +++ + + ++R+R++L+A +A F+ V  +++      +S +YE  KDEDGFLYM  + + TFG
Sbjct:    3 SEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 120          
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: RRFC_ARATH (Ribosome-recycling factor, chloroplastic OS=Arabidopsis thaliana GN=RRF PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.328e-17
Identity = 43/53 (81.13%), Postives = 50/53 (94.34%), Query Frame = -3
Query:  188 QVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 346
            +VA+RNIRRDALK+Y+KL+KEKKLSEDNVKDLSSDLQKL D YMKKI+ +YKQ
Sbjct:  215 KVALRNIRRDALKSYDKLEKEKKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQ 267          
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: MLP3A_BOVIN (Microtubule-associated proteins 1A/1B light chain 3A OS=Bos taurus GN=MAP1LC3A PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.341e-17
Identity = 46/116 (39.66%), Postives = 76/116 (65.52%), Query Frame = 1
Query:  511 FKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFV-KNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 849
            FK       R  E  +IRE++P +IPVI+E  K EK  +P +DK K+LVP  +++ + V ++R+R++L+  +A F+ V ++++      ++ IYE+ KDEDGFLYM Y+ + TFG+
Sbjct:    7 FKQRRSFADRCKEVQQIREQHPSKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121          
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: MLP3A_RAT (Microtubule-associated proteins 1A/1B light chain 3A OS=Rattus norvegicus GN=Map1lc3a PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.215e-17
Identity = 45/116 (38.79%), Postives = 76/116 (65.52%), Query Frame = 1
Query:  511 FKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFV-KNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 849
            FK       R  E  +IR+++P +IPVI+E  K EK  +P +DK K+LVP  +++ + V ++R+R++L+  +A F+ V ++++      ++ IYE+ KDEDGFLYM Y+ + TFG+
Sbjct:    7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121          
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: MLP3A_MOUSE (Microtubule-associated proteins 1A/1B light chain 3A OS=Mus musculus GN=Map1lc3a PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.215e-17
Identity = 45/116 (38.79%), Postives = 76/116 (65.52%), Query Frame = 1
Query:  511 FKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFV-KNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 849
            FK       R  E  +IR+++P +IPVI+E  K EK  +P +DK K+LVP  +++ + V ++R+R++L+  +A F+ V ++++      ++ IYE+ KDEDGFLYM Y+ + TFG+
Sbjct:    7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121          
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: MLP3A_HUMAN (Microtubule-associated proteins 1A/1B light chain 3A OS=Homo sapiens GN=MAP1LC3A PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 5.215e-17
Identity = 45/116 (38.79%), Postives = 76/116 (65.52%), Query Frame = 1
Query:  511 FKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFV-KNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 849
            FK       R  E  +IR+++P +IPVI+E  K EK  +P +DK K+LVP  +++ + V ++R+R++L+  +A F+ V ++++      ++ IYE+ KDEDGFLYM Y+ + TFG+
Sbjct:    7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121          
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: LGG2_CAEEL (Protein lgg-2 OS=Caenorhabditis elegans GN=lgg-2 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.087e-14
Identity = 38/115 (33.04%), Postives = 71/115 (61.74%), Query Frame = 1
Query:  508 SFKLEHPLERRLAESARIREKYPDRIPVIVEKAE-KTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFV-KNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 846
            SFK   P   R  +   IR + P+++PVI+E+ + +  +P +D+ K+LVP  ++V + + +VR+R++L  ++A F+ V + ++      MS +Y + +D DGF+YM Y+ +  FG
Sbjct:   16 SFKERRPFHERQKDVEEIRSQQPNKVPVIIERFDGERSLPLMDRCKFLVPEHITVAELMSIVRRRLQLHPQQAFFLLVNERSMVSNSMSMSNLYSQERDPDGFVYMVYTSQPAFG 130          
The following BLAST results are available for this feature:
BLAST of CX069537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RRFC_DAUCA1.045e-1779.25Ribosome-recycling factor, chloroplastic (Fragment... [more]
MP3B2_HUMAN1.372e-1737.82Microtubule-associated proteins 1A/1B light chain ... [more]
RRFC_ARATH2.328e-1781.13Ribosome-recycling factor, chloroplastic OS=Arabid... [more]
MLP3A_BOVIN2.341e-1739.66Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_RAT5.215e-1738.79Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_MOUSE5.215e-1738.79Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_HUMAN5.215e-1738.79Microtubule-associated proteins 1A/1B light chain ... [more]
LGG2_CAEEL1.087e-1433.04Protein lgg-2 OS=Caenorhabditis elegans GN=lgg-2 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11B05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11B05-D9-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069537 ID=CX069537; Name=CX069537; organism=Citrus sinensis; type=EST; length=885bp
CTTTTTTTAACTAATTTCCACATTTCATTTCATAACAAAATATCCACCCG
TGTCTCCCATTAGTATCAAAAAATGCCATTCTATGGGCAAACCAAAAAAT
AAAGAGTGCATTCTGAGATTCACTAGAGAGCTCACCATTACATTTGTGTG
TAAACAATCATTAAACCTTCAACAACTCCTTCTCTTTCTGTTTGTAGATG
CTATCAATCTTCTTCATATACTCATCTGTTAGTTTCTGTAAATCACTTGA
CAAGTCCTTCACATTGTCTTCAGAGAGCTTCTTCTCCTTCTGAAGTTTTT
CATAAGCTTTTAACGCATCTCTTCTTATATTCCTAACTGCCACCTGCAAA
TGATTGATGGGGGCAGTGCAGCAAAGCCACAATCAACCGATCAATCAATC
AATCAATCAAATACCTTGAAACCCTAATAATTTCCTTCTCTTCCCGATCC
ACTTCTCGTGTCGTGTTGAAGAGTCATCGTAGCGTCAGTTTCGCCATGGC
CAAAAGTTCATTCAAGCTCGAGCATCCATTGGAGAGGAGGCTGGCAGAAT
CTGCTCGCATTAGAGAGAAGTATCCTGACAGGATTCCGGTGATTGTGGAG
AAGGCTGAGAAGACTGATGTTCCTGACATTGACAAGAAAAAATACCTTGT
CCCAGCGGATTTATCTGTGGGACAATTTGTTTATGTTGTCCGTAAAAGGA
TTAAGCTCAGTGCAGAAAAGGCCATATTTGTTTTTGTTAAGAATACTTTA
CCTCCAACCGGTGCCTTGATGTCTGCTATATATGAGGAAAACAAGGATGA
AGATGGTTTTCTTTACATGACTTACAGTGGAGAGAATACCTTCGGTTGGT
CATTTTAAGAGCGAAGGCAACAAGCCATGTATCAT
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