CX069537
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: RRFC_DAUCA (Ribosome-recycling factor, chloroplastic (Fragment) OS=Daucus carota GN=RRF PE=2 SV=2) HSP 1 Score: 90.8929 bits (224), Expect = 1.045e-17 Identity = 42/53 (79.25%), Postives = 52/53 (98.11%), Query Frame = -3 Query: 188 QVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 346 +VA+RNIRRDA+K+Y+KL+KEKKLSEDNVKDLSSDLQK+ DEY+KK+DSI+KQ Sbjct: 167 KVALRNIRRDAIKSYDKLEKEKKLSEDNVKDLSSDLQKVIDEYIKKVDSIFKQ 219
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: MP3B2_HUMAN (Microtubule-associated proteins 1A/1B light chain 3 beta 2 OS=Homo sapiens GN=MAP1LC3B2 PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.372e-17 Identity = 45/119 (37.82%), Postives = 78/119 (65.55%), Query Frame = 1 Query: 499 AKSSFKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVK-NTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 846 ++ +FK E+R+ + IRE++P +IPVI+E K EK +P +DK K+LVP +++ + + ++R+R++L+A +A F+ V +++ +S +YE KDEDGFLYM + + TFG Sbjct: 3 SEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 120
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: RRFC_ARATH (Ribosome-recycling factor, chloroplastic OS=Arabidopsis thaliana GN=RRF PE=1 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 2.328e-17 Identity = 43/53 (81.13%), Postives = 50/53 (94.34%), Query Frame = -3 Query: 188 QVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 346 +VA+RNIRRDALK+Y+KL+KEKKLSEDNVKDLSSDLQKL D YMKKI+ +YKQ Sbjct: 215 KVALRNIRRDALKSYDKLEKEKKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQ 267
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: MLP3A_BOVIN (Microtubule-associated proteins 1A/1B light chain 3A OS=Bos taurus GN=MAP1LC3A PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 2.341e-17 Identity = 46/116 (39.66%), Postives = 76/116 (65.52%), Query Frame = 1 Query: 511 FKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFV-KNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 849 FK R E +IRE++P +IPVI+E K EK +P +DK K+LVP +++ + V ++R+R++L+ +A F+ V ++++ ++ IYE+ KDEDGFLYM Y+ + TFG+ Sbjct: 7 FKQRRSFADRCKEVQQIREQHPSKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: MLP3A_RAT (Microtubule-associated proteins 1A/1B light chain 3A OS=Rattus norvegicus GN=Map1lc3a PE=1 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 5.215e-17 Identity = 45/116 (38.79%), Postives = 76/116 (65.52%), Query Frame = 1 Query: 511 FKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFV-KNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 849 FK R E +IR+++P +IPVI+E K EK +P +DK K+LVP +++ + V ++R+R++L+ +A F+ V ++++ ++ IYE+ KDEDGFLYM Y+ + TFG+ Sbjct: 7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: MLP3A_MOUSE (Microtubule-associated proteins 1A/1B light chain 3A OS=Mus musculus GN=Map1lc3a PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 5.215e-17 Identity = 45/116 (38.79%), Postives = 76/116 (65.52%), Query Frame = 1 Query: 511 FKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFV-KNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 849 FK R E +IR+++P +IPVI+E K EK +P +DK K+LVP +++ + V ++R+R++L+ +A F+ V ++++ ++ IYE+ KDEDGFLYM Y+ + TFG+ Sbjct: 7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: MLP3A_HUMAN (Microtubule-associated proteins 1A/1B light chain 3A OS=Homo sapiens GN=MAP1LC3A PE=1 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 5.215e-17 Identity = 45/116 (38.79%), Postives = 76/116 (65.52%), Query Frame = 1 Query: 511 FKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFV-KNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 849 FK R E +IR+++P +IPVI+E K EK +P +DK K+LVP +++ + V ++R+R++L+ +A F+ V ++++ ++ IYE+ KDEDGFLYM Y+ + TFG+ Sbjct: 7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: LGG2_CAEEL (Protein lgg-2 OS=Caenorhabditis elegans GN=lgg-2 PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.087e-14 Identity = 38/115 (33.04%), Postives = 71/115 (61.74%), Query Frame = 1 Query: 508 SFKLEHPLERRLAESARIREKYPDRIPVIVEKAE-KTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFV-KNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 846 SFK P R + IR + P+++PVI+E+ + + +P +D+ K+LVP ++V + + +VR+R++L ++A F+ V + ++ MS +Y + +D DGF+YM Y+ + FG Sbjct: 16 SFKERRPFHERQKDVEEIRSQQPNKVPVIIERFDGERSLPLMDRCKFLVPEHITVAELMSIVRRRLQLHPQQAFFLLVNERSMVSNSMSMSNLYSQERDPDGFVYMVYTSQPAFG 130 The following BLAST results are available for this feature:
BLAST of CX069537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 88
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069537 ID=CX069537; Name=CX069537; organism=Citrus sinensis; type=EST; length=885bpback to top |