CX069529

Overview
NameCX069529
Unique NameCX069529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_PINKO (ATP synthase subunit alpha, chloroplastic OS=Pinus koraiensis GN=atpA PE=3 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 5.725e-89
Identity = 169/200 (84.50%), Postives = 187/200 (93.50%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M  ++ DEIS+IIR++I+QYN  V + N+GTVLQVGDGIARI+GL EVMAGELVEF +GT+GIALNL S NVGVVLMGDGLMIQEGSSV+ATGKIAQIPVS+AYLGRV+NALA+PIDG+G+ISASE RLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ+ QNVICVYVAIG
Sbjct:    1 MGNLQIDEISSIIRKQIKQYNDAVGVGNLGTVLQVGDGIARIHGLYEVMAGELVEFGDGTVGIALNLGSDNVGVVLMGDGLMIQEGSSVRATGKIAQIPVSDAYLGRVVNALAQPIDGKGQISASEFRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQKSQNVICVYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_MESVI (ATP synthase subunit alpha, chloroplastic OS=Mesostigma viride GN=atpA PE=3 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 6.330e-88
Identity = 159/200 (79.50%), Postives = 186/200 (93.00%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M  I+ +EIS++IR++IEQYN+EVK+VN GTVLQVGDGIARIYGL + MAGEL+EFE+GT+GIALNLES NVG VLMGDG  IQEGS VKATGKIAQIP+ E+Y+GRV++ALA+PIDG+G+I +SE+RLIESPAPGIISRRSVYEPLQTGL+++D+MIPIGRGQRELIIGDRQTGKTAVA DTILNQ+GQNVICVYVAIG
Sbjct:    1 MIKIQPEEISSVIRKQIEQYNQEVKVVNTGTVLQVGDGIARIYGLAKAMAGELLEFEDGTVGIALNLESNNVGAVLMGDGFSIQEGSRVKATGKIAQIPIGESYIGRVVDALARPIDGKGDIPSSETRLIESPAPGIISRRSVYEPLQTGLVSVDAMIPIGRGQRELIIGDRQTGKTAVAIDTILNQKGQNVICVYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_ADICA (ATP synthase subunit alpha, chloroplastic OS=Adiantum capillus-veneris GN=atpA PE=2 SV=2)

HSP 1 Score: 323.939 bits (829), Expect = 6.330e-88
Identity = 165/201 (82.09%), Postives = 187/201 (93.03%), Query Frame = 1
Query:  202 LMTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            ++  I+ DEI +IIR++I+ Y  E+K+VNIGTVLQVGDGIARI+GLDEVMAGELVEFE+GT+GIALNLES NVG VLMGDGL I+EG SV+ATGKIAQIPVS+++LGRV+NALA+PIDG+G+I ASE RLIES APGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ+GQNVICVYVAIG
Sbjct:    1 MVINIQPDEIGSIIRKQIKGYVPEMKVVNIGTVLQVGDGIARIHGLDEVMAGELVEFEDGTVGIALNLESDNVGAVLMGDGLTIREGGSVRATGKIAQIPVSDSFLGRVVNALAQPIDGKGQIPASEFRLIESSAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQKGQNVICVYVAIG 201          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_NEPOL (ATP synthase subunit alpha, chloroplastic OS=Nephroselmis olivacea GN=atpA PE=3 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.410e-87
Identity = 157/200 (78.50%), Postives = 186/200 (93.00%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M  I+ DEISNIIR++IEQY++EVK+V++GTVLQVGDGIARIYGL++VMAGEL+EFE+GT+GIALNLE+ NVG VLMG GL IQEGS+VKATGKIAQ+PV EA+LGRV+NALA+PIDG+G+I++ ESRL+E PAPGII RRSVYEP+QTGLIAID+MIPIGRGQRELIIGDRQTGKTA+ATD I+NQ+G  VICVYVAIG
Sbjct:    1 MVKIRPDEISNIIRQQIEQYSQEVKVVSVGTVLQVGDGIARIYGLEKVMAGELLEFEDGTVGIALNLEADNVGAVLMGSGLSIQEGSAVKATGKIAQVPVGEAFLGRVVNALARPIDGKGDIASKESRLLEGPAPGIIERRSVYEPMQTGLIAIDAMIPIGRGQRELIIGDRQTGKTAIATDAIVNQKGSGVICVYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_OLTVI (ATP synthase subunit alpha, chloroplastic OS=Oltmannsiellopsis viridis GN=atpA PE=3 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 5.359e-87
Identity = 158/200 (79.00%), Postives = 186/200 (93.00%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M  I+ DEIS+IIR++IEQY++EVK+VN+GTV QVGDGIARIYGL++VMAGEL+EFE+GT+GIALNLE+ NVG VLMG GL +QEGSSV+ATGKIAQIPV EAYLGRV+NALA+PIDG+GEISA E+RLIES APGII+RRSV+EP+QTGLI++D+MIPIGRGQRELIIGDRQTGKTA+A DTILNQ+G  VICVYVAIG
Sbjct:    1 MVKIQPDEISSIIRQQIEQYSQEVKVVNVGTVFQVGDGIARIYGLEKVMAGELLEFEDGTVGIALNLEAKNVGAVLMGTGLSVQEGSSVRATGKIAQIPVGEAYLGRVVNALARPIDGKGEISADETRLIESVAPGIITRRSVHEPMQTGLISVDAMIPIGRGQRELIIGDRQTGKTAIALDTILNQKGNGVICVYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_CHLVU (ATP synthase subunit alpha, chloroplastic OS=Chlorella vulgaris GN=atpA PE=3 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 9.141e-87
Identity = 155/200 (77.50%), Postives = 185/200 (92.50%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M  I+ DEIS+II+++IEQY +EVK VN+GTV QVGDGIARIYGLD+VMAGELVEFE+GT+GIALNLE+ NVG VLMG+G  +QEGSSV+ATGKIAQIPV + YLGRV+N+LA+PIDG+GEI+  E+RLIESPAPGIISRRSV+EPLQTG++AID+MIPIGRGQRELIIGDRQTGKTA+A DTILNQ+G++V+CVYVAIG
Sbjct:    1 MVKIRPDEISSIIKQQIEQYQQEVKAVNVGTVFQVGDGIARIYGLDKVMAGELVEFEDGTVGIALNLEAKNVGAVLMGEGTRVQEGSSVRATGKIAQIPVGDGYLGRVVNSLARPIDGKGEIATKENRLIESPAPGIISRRSVHEPLQTGIVAIDAMIPIGRGQRELIIGDRQTGKTAIAVDTILNQKGKDVVCVYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_PSEAK (ATP synthase subunit alpha, chloroplastic OS=Pseudendoclonium akinetum GN=atpA PE=3 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 2.036e-86
Identity = 158/200 (79.00%), Postives = 187/200 (93.50%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M  I+ DEIS+IIR++I QY+ EVK+VN+GTV QVGDGIARIYGL++VMAGEL+EFE+GTIGIALNLE+ NVG VLMGDGL IQEGSSV+ATGKIAQIPVSE+YLGRV+N+LA PIDG+G I++SE+RLIES APGIISRRSV+EPLQTGL+A+D+MIPIGRGQRELIIGDRQTGKTA+A DTI+NQ+G++VICVYVAIG
Sbjct:    1 MVKIQPDEISSIIRQQIAQYSEEVKVVNVGTVFQVGDGIARIYGLEKVMAGELLEFEDGTIGIALNLETKNVGAVLMGDGLAIQEGSSVRATGKIAQIPVSESYLGRVVNSLALPIDGKGAINSSETRLIESLAPGIISRRSVHEPLQTGLVAVDAMIPIGRGQRELIIGDRQTGKTAIAVDTIINQKGKDVICVYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_OSTTA (ATP synthase subunit alpha, chloroplastic OS=Ostreococcus tauri GN=atpA PE=3 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 3.474e-86
Identity = 155/200 (77.50%), Postives = 185/200 (92.50%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M  I+ DEIS++IR++IEQY +E ++VN+GTVLQVGDGIARIYGL +VM+GEL+EF++GTIG+ALNLE+ NVG VLMGDGL IQEG SVKATGKIAQ+PV EA+LGRV++ALA+PIDGRG+I A  +RLIESPAPGII+RRSVYEPLQTGL++ID+MIPIGRGQRELIIGDRQTGKTAVATDTI+NQ+G +VICVYVAIG
Sbjct:    1 MVKIRPDEISSVIRQQIEQYTQEAQVVNVGTVLQVGDGIARIYGLQKVMSGELLEFQDGTIGVALNLETDNVGAVLMGDGLKIQEGDSVKATGKIAQVPVGEAFLGRVVDALARPIDGRGDIKADGTRLIESPAPGIIARRSVYEPLQTGLVSIDAMIPIGRGQRELIIGDRQTGKTAVATDTIINQKGGDVICVYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_LEPTE (ATP synthase subunit alpha, chloroplastic OS=Leptosira terrestris GN=atpA PE=3 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 5.925e-86
Identity = 153/197 (77.66%), Postives = 184/197 (93.40%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            I+ADEIS+IIR++IEQYN EV +VN+GTV QVGDGIARIYGLD VMAGEL+EF +GT+G+ALNLE+ NVG VLMGDGL +QEG++V+ TGK+AQIPV EA+LGR++NALA+PIDG+GEI  +E+RLIES APGIISRRSV+EPLQTGL+A+D+MIPIGRGQRELIIGDRQTGKTA+ATDTILNQ+G++VICVYVAIG
Sbjct:    6 IRADEISSIIRQQIEQYNDEVTVVNVGTVFQVGDGIARIYGLDNVMAGELLEFADGTVGLALNLETKNVGAVLMGDGLTVQEGTAVRGTGKVAQIPVGEAFLGRIVNALAEPIDGKGEIQTTETRLIESNAPGIISRRSVHEPLQTGLVAVDAMIPIGRGQRELIIGDRQTGKTAIATDTILNQKGKDVICVYVAIG 202          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_STIHE (ATP synthase subunit alpha, chloroplastic OS=Stigeoclonium helveticum GN=atpA PE=3 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 7.243e-84
Identity = 151/197 (76.65%), Postives = 184/197 (93.40%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            ++ +EIS+II ++IEQYN+EV++VN GTV QVGDGIARIYGL++VMAGEL+EFE+GTIGIALNLE+ NVG VLMGDGL I+EGS V+ATGK+AQI V E YLGRV+++LA+PIDG+G+I++ ++RLIESPAPGIISRRSV+EPLQTGLIA+D+MIPIGRGQRELIIGDRQTGKTA+A DTILNQ+G+NVICVYVAIG
Sbjct:    3 MRPEEISSIIMKQIEQYNQEVQVVNFGTVFQVGDGIARIYGLEKVMAGELLEFEDGTIGIALNLEAKNVGAVLMGDGLKIKEGSKVRATGKVAQIAVGEGYLGRVVDSLARPIDGKGDIASDDTRLIESPAPGIISRRSVHEPLQTGLIAVDAMIPIGRGQRELIIGDRQTGKTAIAIDTILNQKGKNVICVYVAIG 199          
The following BLAST results are available for this feature:
BLAST of CX069529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_PINKO5.725e-8984.50ATP synthase subunit alpha, chloroplastic OS=Pinus... [more]
ATPA_MESVI6.330e-8879.50ATP synthase subunit alpha, chloroplastic OS=Mesos... [more]
ATPA_ADICA6.330e-8882.09ATP synthase subunit alpha, chloroplastic OS=Adian... [more]
ATPA_NEPOL1.410e-8778.50ATP synthase subunit alpha, chloroplastic OS=Nephr... [more]
ATPA_OLTVI5.359e-8779.00ATP synthase subunit alpha, chloroplastic OS=Oltma... [more]
ATPA_CHLVU9.141e-8777.50ATP synthase subunit alpha, chloroplastic OS=Chlor... [more]
ATPA_PSEAK2.036e-8679.00ATP synthase subunit alpha, chloroplastic OS=Pseud... [more]
ATPA_OSTTA3.474e-8677.50ATP synthase subunit alpha, chloroplastic OS=Ostre... [more]
ATPA_LEPTE5.925e-8677.66ATP synthase subunit alpha, chloroplastic OS=Lepto... [more]
ATPA_STIHE7.243e-8476.65ATP synthase subunit alpha, chloroplastic OS=Stige... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11A09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11A09-B17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069529 ID=CX069529; Name=CX069529; organism=Citrus sinensis; type=EST; length=804bp
GTCCGACAACGGGTTTTCCAACAAGCTTTACAAGGAGCGCTCGGAACTCT
GAATAGTTGTTTGAACAAGGAGTTACATTTACGTACCATTAGTGCCAATA
TTGGCATGTTTGGAGCGATGAAAGAAATAACTGATTAGTCCTTTTACTGT
AGGCACATTATTTTTTTTTTTTTTTTTAAGAAAAAAAAGAATTAAGAAAT
ACTTATGACAACAATTAAAGCCGACGAAATTAGTAATATTATCCGCGAAC
GTATTGAGCAATATAATAGAGAAGTAAAGATTGTAAATATTGGGACCGTA
CTTCAAGTAGGCGACGGCATCGCCCGTATTTATGGTCTTGATGAAGTAAT
GGCAGGTGAATTAGTAGAATTTGAAGAGGGTACAATAGGCATTGCTCTGA
ATTTGGAATCAACTAATGTTGGTGTTGTTTTAATGGGTGACGGTTTAATG
ATACAAGAAGGAAGTTCTGTAAAAGCAACCGGAAAAATTGCTCAGATACC
AGTAAGCGAGGCTTATTTAGGTCGTGTTATAAATGCCCTGGCTAAACCTA
TTGATGGTCGAGGTGAAATTTCAGCTTCTGAATCTCGATTAATTGAATCC
CCTGCTCCGGGTATTATTTCGAGACGTTCCGTATATGAGCCTCTTCAAAC
AGGACTTATTGCTATTGATTCGATGATCCCTATCGGACGCGGTCAGCGAG
AATTAATTATTGGGGACAGACAGACCGGTAAAACGGCAGTAGCCACGGAT
ACGATTCTCAACCAACAAGGGCAAAATGTAATATGTGTTTATGTAGCTAT
TGGT
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