CX069529

Overview
NameCX069529
Unique NameCX069529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_ARATH (ATP synthase subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=atpA PE=1 SV=1)

HSP 1 Score: 369.007 bits (946), Expect = 1.716e-101
Identity = 193/200 (96.50%), Postives = 195/200 (97.50%), Query Frame = 1 
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M TI+ADEISNIIRERIEQYNREV IVN GTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLES NVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALA PIDGRG+ISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG
Sbjct:    1 MVTIRADEISNIIRERIEQYNREVTIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESNNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALANPIDGRGKISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 200
[Close]
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_ARAHI (ATP synthase subunit alpha, chloroplastic OS=Arabis hirsuta GN=atpA PE=3 SV=1)

HSP 1 Score: 369.007 bits (946), Expect = 1.716e-101
Identity = 193/200 (96.50%), Postives = 195/200 (97.50%), Query Frame = 1 
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M TI+ADEISNIIRERIEQYNREV IVN GTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLES NVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALA PIDGRG+ISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG
Sbjct:    1 MVTIRADEISNIIRERIEQYNREVTIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESNNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALANPIDGRGKISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 200
[Close]
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_SOYBN (ATP synthase subunit alpha, chloroplastic OS=Glycine max GN=atpA PE=3 SV=1)

HSP 1 Score: 368.622 bits (945), Expect = 2.241e-101
Identity = 193/200 (96.50%), Postives = 195/200 (97.50%), Query Frame = 1 
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M TI+ADEIS IIRERIEQYN EVKIVN GTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLES NVGVVLMGDGLMIQEGSSVKATG+IAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG
Sbjct:    1 MVTIRADEISKIIRERIEQYNTEVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESKNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 200
[Close]
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_HELAN (ATP synthase subunit alpha, chloroplastic OS=Helianthus annuus GN=atpA PE=3 SV=1)

HSP 1 Score: 368.622 bits (945), Expect = 2.241e-101
Identity = 192/200 (96.00%), Postives = 197/200 (98.50%), Query Frame = 1 
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M TI+ADEISNIIRERIEQYNREVKIVN GTVLQVGDGIARI+GLDEVMAGELVEF+EGTIGIALNLESTNVGVVLMGDGL+IQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEIS+SE RLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG
Sbjct:    1 MVTIQADEISNIIRERIEQYNREVKIVNTGTVLQVGDGIARIHGLDEVMAGELVEFQEGTIGIALNLESTNVGVVLMGDGLLIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISSSEYRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 200
[Close]
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_GOSBA (ATP synthase subunit alpha, chloroplastic OS=Gossypium barbadense GN=atpA PE=3 SV=1)

HSP 1 Score: 368.237 bits (944), Expect = 2.927e-101
Identity = 193/200 (96.50%), Postives = 195/200 (97.50%), Query Frame = 1 
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M TI+ADEISNIIRERIEQYNREVKIVN GTVLQVGDGIARI+GLDEVMAGELVEFEEGTIGIALNLES NVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDG GEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELI GDRQTGKTAVATDTILNQQGQNVICVYVAIG
Sbjct:    1 MVTIRADEISNIIRERIEQYNREVKIVNTGTVLQVGDGIARIHGLDEVMAGELVEFEEGTIGIALNLESNNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGWGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIFGDRQTGKTAVATDTILNQQGQNVICVYVAIG 200
[Close]
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_BUXMI (ATP synthase subunit alpha, chloroplastic OS=Buxus microphylla GN=atpA PE=3 SV=1)

HSP 1 Score: 368.237 bits (944), Expect = 2.927e-101
Identity = 192/200 (96.00%), Postives = 196/200 (98.00%), Query Frame = 1 
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M TI+ADEISNIIRERIEQYNREVKIVN GTVLQVGDGIARI+GLDEVMAGELVEFEEGTIGIALNLES NVGVVLMGDGLMIQEGSSVKATG+IAQIPVSE YLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ+GQNVICVYVAIG
Sbjct:    1 MVTIQADEISNIIRERIEQYNREVKIVNTGTVLQVGDGIARIHGLDEVMAGELVEFEEGTIGIALNLESNNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEGYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQKGQNVICVYVAIG 200
[Close]
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_OLIPU (ATP synthase subunit alpha, chloroplastic OS=Olimarabidopsis pumila GN=atpA PE=3 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 3.823e-101
Identity = 192/200 (96.00%), Postives = 195/200 (97.50%), Query Frame = 1 
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M TI+ADEISNIIRERIEQYNREV IVN GTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLES NVGVVLMGDGLMIQEGSSVKATGKIAQIPVS+AYLGRVINALA PIDGRG+ISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG
Sbjct:    1 MVTIRADEISNIIRERIEQYNREVTIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESNNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSDAYLGRVINALANPIDGRGKISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 200
[Close]
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_OENGL (ATP synthase subunit alpha, chloroplastic OS=Oenothera glazioviana GN=atpA PE=3 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 3.823e-101
Identity = 191/200 (95.50%), Postives = 196/200 (98.00%), Query Frame = 1 
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M TI+ADEISNIIRERIEQYNREVKIVN GTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLES NVGVVLMGDGL+IQEGSSVKATG+IAQIPVSEAYLGRVINALAKPIDGRGEIS+SESRLIESPAPGIISRRSVYEPLQTGLIAID+MIPIGRGQRELIIGDRQTGKTAVATDTILNQQG NVICVYVAIG
Sbjct:    1 MATIRADEISNIIRERIEQYNREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESKNVGVVLMGDGLLIQEGSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEISSSESRLIESPAPGIISRRSVYEPLQTGLIAIDAMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGNNVICVYVAIG 200
[Close]
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_OENEH (ATP synthase subunit alpha, chloroplastic OS=Oenothera elata subsp. hookeri GN=atpA PE=3 SV=2)

HSP 1 Score: 367.851 bits (943), Expect = 3.823e-101
Identity = 191/200 (95.50%), Postives = 196/200 (98.00%), Query Frame = 1 
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M TI+ADEISNIIRERIEQYNREVKIVN GTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLES NVGVVLMGDGL+IQEGSSVKATG+IAQIPVSEAYLGRVINALAKPIDGRGEIS+SESRLIESPAPGIISRRSVYEPLQTGLIAID+MIPIGRGQRELIIGDRQTGKTAVATDTILNQQG NVICVYVAIG
Sbjct:    1 MATIRADEISNIIRERIEQYNREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESKNVGVVLMGDGLLIQEGSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEISSSESRLIESPAPGIISRRSVYEPLQTGLIAIDAMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGNNVICVYVAIG 200
[Close]
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_LEPVR (ATP synthase subunit alpha, chloroplastic OS=Lepidium virginicum GN=atpA PE=3 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 3.823e-101
Identity = 192/200 (96.00%), Postives = 195/200 (97.50%), Query Frame = 1 
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M TI+ADEISNIIRERIEQYNREV IVN GTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLES NVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALA PIDGRG+I+ASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG
Sbjct:    1 MVTIRADEISNIIRERIEQYNREVTIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESNNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALANPIDGRGKIAASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 200
The following BLAST results are available for this feature:
BLAST of CX069529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_ARATH1.716e-10196.50ATP synthase subunit alpha, chloroplastic OS=Arabi... [more]
ATPA_ARAHI1.716e-10196.50ATP synthase subunit alpha, chloroplastic OS=Arabi... [more]
ATPA_SOYBN2.241e-10196.50ATP synthase subunit alpha, chloroplastic OS=Glyci... [more]
ATPA_HELAN2.241e-10196.00ATP synthase subunit alpha, chloroplastic OS=Helia... [more]
ATPA_GOSBA2.927e-10196.50ATP synthase subunit alpha, chloroplastic OS=Gossy... [more]
ATPA_BUXMI2.927e-10196.00ATP synthase subunit alpha, chloroplastic OS=Buxus... [more]
ATPA_OLIPU3.823e-10196.00ATP synthase subunit alpha, chloroplastic OS=Olima... [more]
ATPA_OENGL3.823e-10195.50ATP synthase subunit alpha, chloroplastic OS=Oenot... [more]
ATPA_OENEH3.823e-10195.50ATP synthase subunit alpha, chloroplastic OS=Oenot... [more]
ATPA_LEPVR3.823e-10196.00ATP synthase subunit alpha, chloroplastic OS=Lepid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11A09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11A09-B17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069529 ID=CX069529; Name=CX069529; organism=Citrus sinensis; type=EST; length=804bp
GTCCGACAACGGGTTTTCCAACAAGCTTTACAAGGAGCGCTCGGAACTCT
GAATAGTTGTTTGAACAAGGAGTTACATTTACGTACCATTAGTGCCAATA
TTGGCATGTTTGGAGCGATGAAAGAAATAACTGATTAGTCCTTTTACTGT
AGGCACATTATTTTTTTTTTTTTTTTTAAGAAAAAAAAGAATTAAGAAAT
ACTTATGACAACAATTAAAGCCGACGAAATTAGTAATATTATCCGCGAAC
GTATTGAGCAATATAATAGAGAAGTAAAGATTGTAAATATTGGGACCGTA
CTTCAAGTAGGCGACGGCATCGCCCGTATTTATGGTCTTGATGAAGTAAT
GGCAGGTGAATTAGTAGAATTTGAAGAGGGTACAATAGGCATTGCTCTGA
ATTTGGAATCAACTAATGTTGGTGTTGTTTTAATGGGTGACGGTTTAATG
ATACAAGAAGGAAGTTCTGTAAAAGCAACCGGAAAAATTGCTCAGATACC
AGTAAGCGAGGCTTATTTAGGTCGTGTTATAAATGCCCTGGCTAAACCTA
TTGATGGTCGAGGTGAAATTTCAGCTTCTGAATCTCGATTAATTGAATCC
CCTGCTCCGGGTATTATTTCGAGACGTTCCGTATATGAGCCTCTTCAAAC
AGGACTTATTGCTATTGATTCGATGATCCCTATCGGACGCGGTCAGCGAG
AATTAATTATTGGGGACAGACAGACCGGTAAAACGGCAGTAGCCACGGAT
ACGATTCTCAACCAACAAGGGCAAAATGTAATATGTGTTTATGTAGCTAT
TGGT
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