CX069529

Overview
NameCX069529
Unique NameCX069529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_LACF3 (ATP synthase subunit alpha OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=atpA PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 5.584e-60
Identity = 107/198 (54.04%), Postives = 154/198 (77.78%), Query Frame = 1
Query:  211 TIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            +IK +EIS++I++++  Y  ++ +   GTV  VGDG+AR  GL+  MAGEL+EFE G  G+A NLES +VG+V++GD   I+EG +VK TG+I ++PV +A LGRV++ L + IDG G+I   ++R IE  APG++ R+SV +PLQTG+  ID+++PIGRGQRELIIGDR+TGKT++A DTI+NQ+ Q++IC+YVAIG
Sbjct:    2 SIKTEEISSLIKKQLANYQDQISVEETGTVTYVGDGVARADGLENAMAGELLEFENGVYGMAQNLESNDVGIVILGDDTAIREGDTVKRTGRIMEVPVGDALLGRVVDPLGRSIDGLGDIKTDKTRPIERKAPGVMERKSVSQPLQTGIKVIDALVPIGRGQRELIIGDRKTGKTSIAIDTIINQKDQDMICIYVAIG 199          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_THEAB (ATP synthase subunit alpha OS=Thermosipho africanus (strain TCF52B) GN=atpA PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 7.293e-60
Identity = 115/198 (58.08%), Postives = 148/198 (74.75%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEF-EEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            I   EI  ++  +IE +  E+ + ++G V+QVGDGIAR YGL+ VMA E+VEF E GTIG+A NLE  NVG++++GD   I+EG +V+   KI Q+PV EA LGRV+N L +P+DG G I A E R +E  APG+I R+ V  PLQTG+  ID++IPIGRGQRELIIGDRQTGKTA+A DTI+NQ+G+ V CVYVAIG
Sbjct:    3 INPGEIVKVLESKIEGFKEEINLEDVGKVIQVGDGIARAYGLNNVMANEMVEFVETGTIGVAFNLEEDNVGIIILGDYKGIKEGHTVRRLKKIMQVPVGEALLGRVVNPLGEPVDGLGPIEAKEFRDVEVKAPGVIYRKPVDTPLQTGIKIIDALIPIGRGQRELIIGDRQTGKTAIAIDTIINQKGKGVYCVYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_NATTJ (ATP synthase subunit alpha OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=atpA PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 7.293e-60
Identity = 112/198 (56.57%), Postives = 150/198 (75.76%), Query Frame = 1
Query:  211 TIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            +I+ DEIS +++++I  Y  +V +  +GTVL +GDGIAR++GL+ VMA ELVEF     G+ALNLE  NVG VL+G+   I+EG  VK TG+I ++PV +  +GRV+N + +P DG+G I A++ R +E+ APG+I R+ V EPLQTGL AIDSMIPIGRGQRELIIGDR TGK+A+  DTILNQ+  +V C+YVAIG
Sbjct:    2 SIRPDEISTVLKDKIANYESQVDVYEVGTVLYIGDGIARVHGLENVMANELVEFPGEIYGMALNLEEDNVGCVLLGEYSHIKEGDQVKRTGRIIEVPVGDDLVGRVVNPVGEPRDGKGPIEATDFRPVETRAPGVIDRKPVEEPLQTGLKAIDSMIPIGRGQRELIIGDRGTGKSAIGIDTILNQKDSDVYCIYVAIG 199          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_LEUCK (ATP synthase subunit alpha OS=Leuconostoc citreum (strain KM20) GN=atpA PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 7.293e-60
Identity = 109/197 (55.33%), Postives = 155/197 (78.68%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            I+A+EIS +I++++E+++  + +  +GTV  +GDG+AR  GL   MAGEL+EF  GT G+A NLES+ VG++++G    I+EG +VK TG+I ++PV E  +GRV+NAL +PIDG GEI   + R +E  APG++ R+SV+EPLQTG+ AID+++PIGRGQRELIIGDR+TGKT++A DTILNQ+ QN+I +YVAIG
Sbjct:    3 IQAEEISALIKQQLEKFDTTLTVEEVGTVTYIGDGVARATGLANAMAGELLEFANGTFGMAQNLESSEVGIIILGGFDDIREGDTVKRTGRIMEVPVGEQLIGRVVNALGQPIDGLGEIKTDKFRPVEVKAPGVMQRKSVFEPLQTGIKAIDALVPIGRGQRELIIGDRKTGKTSLAIDTILNQKDQNMIVIYVAIG 199          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_JANSC (ATP synthase subunit alpha OS=Jannaschia sp. (strain CCS1) GN=atpA PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 7.293e-60
Identity = 115/207 (55.56%), Postives = 151/207 (72.95%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQN----------VICVYVAIG 804
            I+A EIS I++++I+ + ++ ++  +G VL VGDGIAR+YGLD V AGE+VEF  G  G+ALNLE+ NVGVV+ G    I+EG +VK T  I  +P     LGRV++ L  P+DG+G I+ASE R+ +S APGII R+SV+EP+ TGL AID+MIP+GRGQRELIIGDRQTGKTAVA DTILNQ+  N          + C+YVA+G
Sbjct:    3 IQAAEISQILKDQIKSFGQDAQVAEVGRVLSVGDGIARVYGLDNVQAGEMVEFPGGIQGMALNLEADNVGVVIFGSDRDIKEGDTVKRTNSIVDVPAGNELLGRVVDGLGNPLDGKGPINASERRVADSKAPGIIPRKSVHEPMATGLKAIDAMIPVGRGQRELIIGDRQTGKTAVALDTILNQKSYNDAAGDDENKKLYCIYVAVG 209          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_XANP2 (ATP synthase subunit alpha OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=atpA PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 9.525e-60
Identity = 118/205 (57.56%), Postives = 152/205 (74.15%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQN--------VICVYVAIG 804
            I+A EI+ I++E+I+ + +E ++  +G VL VGDGIAR+YGLD V AGE+VEFE GT G+ALNLE  NVG+V+ G    I+EG +VK T  I   PV +  LGRV++AL  PIDG+G I  +E R ++  APGII R+SV+EP+QTGL AID++IPIGRGQRELIIGDRQTGKTAVA D+ILNQ+  N        + CVYVA+G
Sbjct:    3 IRAAEITAILKEQIQNFGQEAEVSEVGQVLSVGDGIARVYGLDNVQAGEMVEFENGTRGMALNLEIDNVGIVIFGSDREIKEGQTVKRTRAIVDAPVGKGLLGRVVDALGNPIDGKGPIVYTERRRVDVKAPGIIPRKSVHEPMQTGLKAIDALIPIGRGQRELIIGDRQTGKTAVALDSILNQKPINQGTDEKAKLYCVYVAVG 207          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_METRJ (ATP synthase subunit alpha OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=atpA PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 9.525e-60
Identity = 115/206 (55.83%), Postives = 150/206 (72.82%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ---------QGQNVICVYVAIG 804
            I+A EIS I++++I+ +  E ++  +G VL VGDGIAR YGLD V AGE+VEFE G  G+ALNLE  NVG+V+ G    I+EG +VK TG I  +PV +  LGRV++AL  PIDG+G I ++E R ++  APGII R+SV+EP+ TGL AID++IP+GRGQRELIIGDRQTGKTA+A DTILNQ         +   + C+YVAIG
Sbjct:    3 IRAAEISAILKDQIKNFGEEAEVSEVGQVLSVGDGIARAYGLDNVQAGEMVEFESGVRGMALNLEQDNVGIVIFGSDREIKEGQTVKRTGAIVDVPVGKGLLGRVVDALGNPIDGKGPIQSTERRRVDVKAPGIIPRKSVHEPMATGLKAIDALIPVGRGQRELIIGDRQTGKTAIALDTILNQKPGHTAGGDEKAKLYCIYVAIG 208          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_DESVV (ATP synthase subunit alpha OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=atpA PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 9.525e-60
Identity = 115/197 (58.38%), Postives = 146/197 (74.11%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            IKA+EIS II E+I+ Y + V++   GTVL VGDGIAR++G+   MA EL+EF  G +G+ LNLE  NVGV L+GD   I+EG  VK TGKI  +PV +A +GRV+N L +PIDG G + A E R +E  APGII+R+SV+EP+ TG+ AID+M PIGRGQREL+IGDRQTGKTAV  D IL Q+  ++ C YVAIG
Sbjct:    3 IKAEEISKIIEEQIQSYEQRVEMSETGTVLYVGDGIARVHGVQNAMAMELLEFPGGLMGMVLNLEEDNVGVALLGDDTQIKEGDPVKRTGKIFSVPVGDAVMGRVLNPLGQPIDGLGPLDAKEFRPVELKAPGIIARKSVHEPMPTGIKAIDAMTPIGRGQRELVIGDRQTGKTAVCIDAILAQKNTDIHCFYVAIG 199          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_DESVH (ATP synthase subunit alpha OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=atpA PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 9.525e-60
Identity = 115/197 (58.38%), Postives = 146/197 (74.11%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            IKA+EIS II E+I+ Y + V++   GTVL VGDGIAR++G+   MA EL+EF  G +G+ LNLE  NVGV L+GD   I+EG  VK TGKI  +PV +A +GRV+N L +PIDG G + A E R +E  APGII+R+SV+EP+ TG+ AID+M PIGRGQREL+IGDRQTGKTAV  D IL Q+  ++ C YVAIG
Sbjct:    3 IKAEEISKIIEEQIQSYEQRVEMSETGTVLYVGDGIARVHGVQNAMAMELLEFPGGLMGMVLNLEEDNVGVALLGDDTQIKEGDPVKRTGKIFSVPVGDAVMGRVLNPLGQPIDGLGPLDAKEFRPVELKAPGIIARKSVHEPMPTGIKAIDAMTPIGRGQRELVIGDRQTGKTAVCIDAILAQKNTDIHCFYVAIG 199          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPAM_PEA (ATP synthase subunit alpha, mitochondrial OS=Pisum sativum GN=ATPA PE=3 SV=2)

HSP 1 Score: 230.335 bits (586), Expect = 9.525e-60
Identity = 116/207 (56.04%), Postives = 149/207 (71.98%), Query Frame = 1
Query:  211 TIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQN---------VICVYVAIG 804
            +++A E++ ++  RI  +    ++  IG V+ VGDGIAR+YGL+E+ AGELVEF  G  GIALNLE+ NVG+V+ G    I+EG  VK TG I  +P  +A LGRV++AL  PIDGRG +S  E R +E  APGII R+SV+EP+QTGL A+DS++PIGRGQRELIIGDRQTGKTA+A DTILNQ+  N         + CVYVAIG
Sbjct:    4 SVRAAELTTLLESRITNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGELVEFASGVKGIALNLENENVGIVVFGSDTSIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQMNSRATSESETLYCVYVAIG 210          
The following BLAST results are available for this feature:
BLAST of CX069529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_LACF35.584e-6054.04ATP synthase subunit alpha OS=Lactobacillus fermen... [more]
ATPA_THEAB7.293e-6058.08ATP synthase subunit alpha OS=Thermosipho africanu... [more]
ATPA_NATTJ7.293e-6056.57ATP synthase subunit alpha OS=Natranaerobius therm... [more]
ATPA_LEUCK7.293e-6055.33ATP synthase subunit alpha OS=Leuconostoc citreum ... [more]
ATPA_JANSC7.293e-6055.56ATP synthase subunit alpha OS=Jannaschia sp. (stra... [more]
ATPA_XANP29.525e-6057.56ATP synthase subunit alpha OS=Xanthobacter autotro... [more]
ATPA_METRJ9.525e-6055.83ATP synthase subunit alpha OS=Methylobacterium rad... [more]
ATPA_DESVV9.525e-6058.38ATP synthase subunit alpha OS=Desulfovibrio vulgar... [more]
ATPA_DESVH9.525e-6058.38ATP synthase subunit alpha OS=Desulfovibrio vulgar... [more]
ATPAM_PEA9.525e-6056.04ATP synthase subunit alpha, mitochondrial OS=Pisum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11A09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11A09-B17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069529 ID=CX069529; Name=CX069529; organism=Citrus sinensis; type=EST; length=804bp
GTCCGACAACGGGTTTTCCAACAAGCTTTACAAGGAGCGCTCGGAACTCT
GAATAGTTGTTTGAACAAGGAGTTACATTTACGTACCATTAGTGCCAATA
TTGGCATGTTTGGAGCGATGAAAGAAATAACTGATTAGTCCTTTTACTGT
AGGCACATTATTTTTTTTTTTTTTTTTAAGAAAAAAAAGAATTAAGAAAT
ACTTATGACAACAATTAAAGCCGACGAAATTAGTAATATTATCCGCGAAC
GTATTGAGCAATATAATAGAGAAGTAAAGATTGTAAATATTGGGACCGTA
CTTCAAGTAGGCGACGGCATCGCCCGTATTTATGGTCTTGATGAAGTAAT
GGCAGGTGAATTAGTAGAATTTGAAGAGGGTACAATAGGCATTGCTCTGA
ATTTGGAATCAACTAATGTTGGTGTTGTTTTAATGGGTGACGGTTTAATG
ATACAAGAAGGAAGTTCTGTAAAAGCAACCGGAAAAATTGCTCAGATACC
AGTAAGCGAGGCTTATTTAGGTCGTGTTATAAATGCCCTGGCTAAACCTA
TTGATGGTCGAGGTGAAATTTCAGCTTCTGAATCTCGATTAATTGAATCC
CCTGCTCCGGGTATTATTTCGAGACGTTCCGTATATGAGCCTCTTCAAAC
AGGACTTATTGCTATTGATTCGATGATCCCTATCGGACGCGGTCAGCGAG
AATTAATTATTGGGGACAGACAGACCGGTAAAACGGCAGTAGCCACGGAT
ACGATTCTCAACCAACAAGGGCAAAATGTAATATGTGTTTATGTAGCTAT
TGGT
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