CX069529

Overview
NameCX069529
Unique NameCX069529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_MESSB (ATP synthase subunit alpha OS=Mesorhizobium sp. (strain BNC1) GN=atpA PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.122e-59
Identity = 115/205 (56.10%), Postives = 150/205 (73.17%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ--------QGQNVICVYVAIG 804
            I+A EIS I++++I+ + +E ++  +G VL VGDGIAR+YGLD V AGE+VEF  G  G+ALNLE  NVGVV+ G    I+EG +VK TG I ++PV    LGRV++AL  PIDG+G I A+E R ++  APGII R+SV+EP+ TGL AID++IPIGRGQRELIIGDRQTGKTA+  DT LNQ        + Q + C+YVA+G
Sbjct:    3 IRAAEISAILKDQIKNFGKEAEVSEVGQVLSVGDGIARVYGLDNVQAGEMVEFPGGIRGMALNLEVDNVGVVIFGADRDIKEGDTVKRTGAIVEVPVGPGLLGRVVDALGNPIDGKGPIQATERRRVDVKAPGIIPRKSVHEPMSTGLKAIDALIPIGRGQRELIIGDRQTGKTAIILDTFLNQKPLNDGDDESQKLYCIYVAVG 207          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_CHLT3 (ATP synthase subunit alpha OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=atpA PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.771e-59
Identity = 122/212 (57.55%), Postives = 148/212 (69.81%), Query Frame = 1
Query:  202 LMTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQN-----------VICVYVAIG 804
            + T ++ DEIS I+R+++  ++ EV + ++GTVLQVGDGIARIYGL +V AGELVEF     G+ LNLE  NVG VL G   +I+EG +VK T  +A IPV EA LGRVIN L +PIDG+G I       +E  APG+I R  V EPLQTGL AIDSMIPIGRGQRELIIGDRQTGKTAVA DTI+NQ+  +           V C+YVA G
Sbjct:    1 MSTAVRPDEISAILRKQLSGFDSEVDVYDVGTVLQVGDGIARIYGLSKVAAGELVEFPHNVTGMVLNLEEDNVGAVLFGSSDLIKEGDTVKRTKILASIPVGEAMLGRVINPLGEPIDGKGAIKTEIRLPLERRAPGVIFRHPVKEPLQTGLKAIDSMIPIGRGQRELIIGDRQTGKTAVAIDTIINQKASHTKEAQEKGAKPVYCIYVATG 212          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_BRASO (ATP synthase subunit alpha OS=Bradyrhizobium sp. (strain ORS278) GN=atpA PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.771e-59
Identity = 117/205 (57.07%), Postives = 151/205 (73.66%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQN--------VICVYVAIG 804
            I+A EIS I++++I+ + +E ++  +G VL VGDGIAR+YGLD V AGE+VEFE GT G+ALNLE+ NVGVV+ G    I+EG +VK T  I   PV +  LGRV++AL  PIDG+G I  +E + ++  APGII R+SV EP+ TGL AID++IPIGRGQRELIIGDRQTGKTA+A DTILNQ+  N        + CVYVA+G
Sbjct:    3 IRAAEISAILKDQIKNFGQEAEVTEVGQVLSVGDGIARVYGLDNVQAGEMVEFENGTRGMALNLETDNVGVVIFGADREIKEGQTVKRTRAIVDAPVGKGLLGRVVDALGNPIDGKGPIQFTERKRVDVKAPGIIPRKSVNEPMATGLKAIDALIPIGRGQRELIIGDRQTGKTAIALDTILNQKPLNAQPDEKIKLYCVYVAVG 207          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_BRASB (ATP synthase subunit alpha OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=atpA PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.771e-59
Identity = 117/205 (57.07%), Postives = 151/205 (73.66%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQN--------VICVYVAIG 804
            I+A EIS I++++I+ + +E ++  +G VL VGDGIAR+YGLD V AGE+VEFE GT G+ALNLE+ NVGVV+ G    I+EG +VK T  I   PV +  LGRV++AL  PIDG+G I  +E + ++  APGII R+SV EP+ TGL AID++IPIGRGQRELIIGDRQTGKTA+A DTILNQ+  N        + CVYVA+G
Sbjct:    3 IRAAEISAILKDQIKNFGQEAEVTEVGQVLSVGDGIARVYGLDNVQAGEMVEFENGTRGMALNLETDNVGVVIFGADREIKEGQTVKRTRAIVDAPVGKGLLGRVVDALGNPIDGKGPIQFTERKRVDVKAPGIIPRKSVNEPMATGLKAIDALIPIGRGQRELIIGDRQTGKTAIALDTILNQKPLNAQPDEKIKLYCVYVAVG 207          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_PARL1 (ATP synthase subunit alpha OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=atpA PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.620e-59
Identity = 117/205 (57.07%), Postives = 148/205 (72.20%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ--------QGQNVICVYVAIG 804
            I+A EIS I++++I+ +  E ++  IG VL VGDGIAR+YGLD V AGE+VEF  G  G+ALNLE  NVGVV+ G    I+EG +VK TG I  IPV +  LGRV++ L  P+DG+G I   E R ++  APGII R+SV+EP+QTGL AID++IPIGRGQRELIIGDRQTGKTA+A D ILNQ        + Q + C+YVAIG
Sbjct:    3 IQAAEISAILKQQIKDFGAEAQVSEIGQVLSVGDGIARVYGLDNVEAGEMVEFPGGVRGMALNLEEDNVGVVIFGSDRNIKEGDTVKRTGAIVDIPVGKGLLGRVVDPLGNPLDGKGPIEGVERRRVDVKAPGIIPRKSVHEPMQTGLKAIDALIPIGRGQRELIIGDRQTGKTAIAIDAILNQKPLNQGDDENQKLYCIYVAIG 207          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPAM_HELAN (ATP synthase subunit alpha, mitochondrial OS=Helianthus annuus GN=ATPA PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.620e-59
Identity = 115/205 (56.10%), Postives = 147/205 (71.71%), Query Frame = 1
Query:  217 KADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQN---------VICVYVAIG 804
            +A E++ ++  RI  +    ++  IG V+ VGDGIAR+YGL+E+ AGE+VEF  G  GIALNLE+ NVG+V+ G    I+EG  VK TG I  +P  +A LGRV++AL  PIDGRG +S  E R +E  APGII R+SV+EP+QTGL A+DS++PIGRGQRELIIGDRQTGKTA+A DTILNQ+  N         + CVYVAIG
Sbjct:    6 RAAELTTLLESRISNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQMNSRSTSESETLYCVYVAIG 210          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_THELT (ATP synthase subunit alpha OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=atpA PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 4.727e-59
Identity = 114/198 (57.58%), Postives = 146/198 (73.74%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEF-EEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            I   EI+ ++ +RI+++  E+ +   G V+Q+GDGIAR+YGL+ VMA ELVEF E G  G+A NLE  NVGV+L+G    I+EG  VK   KI ++PV E  LGRV+N L +P+DG G + A  +R IE  APG+I RR V  PLQTG+ AID+MIPIGRGQRELIIGDRQTGKTA+A DTI+NQ+G+ V C+YVAIG
Sbjct:    3 ISPGEITKVLEDRIKEFKEEIDLQETGRVVQIGDGIARVYGLNSVMADELVEFVETGVKGLAFNLEEDNVGVILLGPYSQIKEGHIVKRLKKIIEVPVGEELLGRVVNPLGEPLDGLGPVEAKHTRKIEIKAPGVIYRRPVNTPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKGKGVYCIYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_SINMW (ATP synthase subunit alpha OS=Sinorhizobium medicae (strain WSM419) GN=atpA PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 4.727e-59
Identity = 114/205 (55.61%), Postives = 150/205 (73.17%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ--------QGQNVICVYVAIG 804
            I+A EIS I++++I+ + +E ++  +G VL VGDGIAR+YGLD V AGE+VEF  G  G+ALNLE+ NVGVV+ G    I+EG +VK TG I  +PV    LGRV++AL  PIDG+G I+A +   ++  APGII R+SV+EP+ TGL AID++IP+GRGQREL+IGDRQTGKTA+  DTILNQ        +G  + CVYVAIG
Sbjct:    3 IRAAEISAILKDQIKNFGQEAEVSEVGQVLSVGDGIARVYGLDNVQAGEMVEFPGGIRGMALNLEADNVGVVIFGSDRDIKEGDTVKRTGAIVDVPVGPELLGRVVDALGNPIDGKGPINAKQRARVDVKAPGIIPRKSVHEPMSTGLKAIDALIPVGRGQRELVIGDRQTGKTAIILDTILNQKAIHDNGPEGDKLYCVYVAIG 207          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_RHISN (ATP synthase subunit alpha OS=Rhizobium sp. (strain NGR234) GN=atpA PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 4.727e-59
Identity = 114/205 (55.61%), Postives = 150/205 (73.17%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ--------QGQNVICVYVAIG 804
            I+A EIS I++++I+ + +E ++  +G VL VGDGIAR+YGLD V AGE+VEF  G  G+ALNLE+ NVGVV+ G    I+EG +VK TG I  +PV    LGRV++AL  PIDG+G I+A +   ++  APGII R+SV+EP+ TGL AID++IP+GRGQREL+IGDRQTGKTA+  DTILNQ        +G  + CVYVAIG
Sbjct:    3 IRAAEISAILKDQIKNFGQEAEVSEVGQVLSVGDGIARVYGLDNVQAGEMVEFPGGIRGMALNLEADNVGVVIFGSDRDIKEGDTVKRTGAIVDVPVGPELLGRVVDALGNPIDGKGPINAKQRSRVDIKAPGIIPRKSVHEPMSTGLKAIDALIPVGRGQRELVIGDRQTGKTAIILDTILNQKAIHDNGPEGDKLYCVYVAIG 207          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_RHIME (ATP synthase subunit alpha OS=Rhizobium meliloti GN=atpA PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 4.727e-59
Identity = 114/205 (55.61%), Postives = 150/205 (73.17%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ--------QGQNVICVYVAIG 804
            I+A EIS I++++I+ + +E ++  +G VL VGDGIAR+YGLD V AGE+VEF  G  G+ALNLE+ NVGVV+ G    I+EG +VK TG I  +PV    LGRV++AL  PIDG+G I+A +   ++  APGII R+SV+EP+ TGL AID++IP+GRGQREL+IGDRQTGKTA+  DTILNQ        +G  + CVYVAIG
Sbjct:    3 IRAAEISAILKDQIKNFGQEAEVSEVGQVLSVGDGIARVYGLDNVQAGEMVEFPGGIRGMALNLEADNVGVVIFGSDRDIKEGDTVKRTGAIVDVPVGPELLGRVVDALGNPIDGKGPINAKQRARVDVKAPGIIPRKSVHEPMSTGLKAIDALIPVGRGQRELVIGDRQTGKTAIILDTILNQKAIHDNGPEGDKLYCVYVAIG 207          
The following BLAST results are available for this feature:
BLAST of CX069529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_MESSB2.122e-5956.10ATP synthase subunit alpha OS=Mesorhizobium sp. (s... [more]
ATPA_CHLT32.771e-5957.55ATP synthase subunit alpha OS=Chloroherpeton thala... [more]
ATPA_BRASO2.771e-5957.07ATP synthase subunit alpha OS=Bradyrhizobium sp. (... [more]
ATPA_BRASB2.771e-5957.07ATP synthase subunit alpha OS=Bradyrhizobium sp. (... [more]
ATPA_PARL13.620e-5957.07ATP synthase subunit alpha OS=Parvibaculum lavamen... [more]
ATPAM_HELAN3.620e-5956.10ATP synthase subunit alpha, mitochondrial OS=Helia... [more]
ATPA_THELT4.727e-5957.58ATP synthase subunit alpha OS=Thermotoga lettingae... [more]
ATPA_SINMW4.727e-5955.61ATP synthase subunit alpha OS=Sinorhizobium medica... [more]
ATPA_RHISN4.727e-5955.61ATP synthase subunit alpha OS=Rhizobium sp. (strai... [more]
ATPA_RHIME4.727e-5955.61ATP synthase subunit alpha OS=Rhizobium meliloti G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11A09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11A09-B17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069529 ID=CX069529; Name=CX069529; organism=Citrus sinensis; type=EST; length=804bp
GTCCGACAACGGGTTTTCCAACAAGCTTTACAAGGAGCGCTCGGAACTCT
GAATAGTTGTTTGAACAAGGAGTTACATTTACGTACCATTAGTGCCAATA
TTGGCATGTTTGGAGCGATGAAAGAAATAACTGATTAGTCCTTTTACTGT
AGGCACATTATTTTTTTTTTTTTTTTTAAGAAAAAAAAGAATTAAGAAAT
ACTTATGACAACAATTAAAGCCGACGAAATTAGTAATATTATCCGCGAAC
GTATTGAGCAATATAATAGAGAAGTAAAGATTGTAAATATTGGGACCGTA
CTTCAAGTAGGCGACGGCATCGCCCGTATTTATGGTCTTGATGAAGTAAT
GGCAGGTGAATTAGTAGAATTTGAAGAGGGTACAATAGGCATTGCTCTGA
ATTTGGAATCAACTAATGTTGGTGTTGTTTTAATGGGTGACGGTTTAATG
ATACAAGAAGGAAGTTCTGTAAAAGCAACCGGAAAAATTGCTCAGATACC
AGTAAGCGAGGCTTATTTAGGTCGTGTTATAAATGCCCTGGCTAAACCTA
TTGATGGTCGAGGTGAAATTTCAGCTTCTGAATCTCGATTAATTGAATCC
CCTGCTCCGGGTATTATTTCGAGACGTTCCGTATATGAGCCTCTTCAAAC
AGGACTTATTGCTATTGATTCGATGATCCCTATCGGACGCGGTCAGCGAG
AATTAATTATTGGGGACAGACAGACCGGTAAAACGGCAGTAGCCACGGAT
ACGATTCTCAACCAACAAGGGCAAAATGTAATATGTGTTTATGTAGCTAT
TGGT
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