CX069529

Overview
NameCX069529
Unique NameCX069529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_RHILO (ATP synthase subunit alpha OS=Rhizobium loti GN=atpA PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 4.727e-59
Identity = 113/205 (55.12%), Postives = 151/205 (73.66%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQG--------QNVICVYVAIG 804
            I+A EIS I++++I+ + RE ++  +G VL VGDGIAR+YGLD V AGE+VEF  G  G+ALNLE+ NVGVV+ G    I+EG +VK TG I  +PV    LGRV++AL  PIDG+G I A+E + ++  APGII R+SV+EP+ TGL AID++IP+GRGQREL+IGDRQTGKTA+  DT+LNQ+         + + CVYVA+G
Sbjct:    3 IRAAEISAILKDQIKNFGREAEVSEVGQVLSVGDGIARVYGLDNVQAGEMVEFPGGIRGMALNLEADNVGVVIFGADRDIKEGDTVKRTGAIVDVPVGPGLLGRVVDALGNPIDGKGPIKATERKRVDVKAPGIIPRKSVHEPMSTGLKAIDALIPVGRGQRELVIGDRQTGKTAIILDTMLNQKSVHDNGPEKEKLYCVYVAVG 207          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_OCHA4 (ATP synthase subunit alpha OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=atpA PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 4.727e-59
Identity = 115/205 (56.10%), Postives = 149/205 (72.68%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQ--------GQNVICVYVAIG 804
            I+A EIS I++E+I+ + +E ++  +G VL VGDGIAR+YGLD V AGE+VEF  G  G+ALNLES NVGVV+ G    I+EG  VK TG I  +PV    LGRV++AL  PIDG+G I A+E R ++  APGII R+SV+EP+ TGL A+D++IP+GRGQREL+IGDRQTGKTA+  DT LNQ+         + + CVYVAIG
Sbjct:    3 IRAAEISAILKEQIKNFGKEAEVSEVGQVLSVGDGIARVYGLDNVQAGEMVEFPGGIRGMALNLESDNVGVVIFGADRDIKEGDIVKRTGAIVDVPVGPGLLGRVVDALGNPIDGKGPIVATERRRVDVKAPGIIPRKSVHEPMSTGLKAVDALIPVGRGQRELVIGDRQTGKTAIILDTFLNQKPIHDNGPDSEKLYCVYVAIG 207          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_NOVAD (ATP synthase subunit alpha OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=atpA PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 4.727e-59
Identity = 113/205 (55.12%), Postives = 151/205 (73.66%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ--------QGQNVICVYVAIG 804
            I+A EIS +I+++I  +  E ++  +G+VL VGDGIARI+GLD+V AGE+VEF  G  G+ALNLE+ NVGVV+ G    I+EG  VK TG I  +PV +  LGRV++AL  PIDG+G I  +  + +E  APGII R+SV+EP+QTGL AID+++P+GRGQRELIIGDRQTGKTAVA DT +NQ        +G+ + C+YVA+G
Sbjct:    3 IRAAEISKVIKDQIASFGTEAQVSEVGSVLSVGDGIARIHGLDKVQAGEMVEFSNGVKGMALNLEADNVGVVIFGSDSEIKEGDVVKRTGTIVDVPVGKGLLGRVVDALGNPIDGKGPIVDATRQRVEVKAPGIIPRKSVHEPVQTGLKAIDALVPVGRGQRELIIGDRQTGKTAVAIDTFINQKAVNAGTDEGKKLYCIYVAVG 207          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_METFK (ATP synthase subunit alpha OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=atpA PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 4.727e-59
Identity = 110/197 (55.84%), Postives = 147/197 (74.62%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            +   EIS +I+ R+E ++   +    GTV+ V DGI RI+GL  VMAGE++EF     G+ALNLE  +VG V++GD   I EG +VK TG+I ++PV    +GRV+NAL +PIDG+G I+A  +  IE  APG+I+R+SV +P+QTG+ AIDSM+P+GRGQRELIIGDRQTGKTAVA D I+NQ+GQN+ C+YVAIG
Sbjct:    3 LSTSEISELIKSRLENFSTSAEARTQGTVISVTDGIVRIHGLSNVMAGEMIEFPGNVYGLALNLERDSVGAVILGDYENISEGDTVKCTGRILEVPVGPELVGRVVNALGQPIDGKGPINAKLTDKIEKVAPGVIARKSVSQPVQTGIKAIDSMVPVGRGQRELIIGDRQTGKTAVAVDAIINQKGQNMTCIYVAIG 199          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_AGRT5 (ATP synthase subunit alpha OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=atpA PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 4.727e-59
Identity = 114/205 (55.61%), Postives = 150/205 (73.17%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQ--------GQNVICVYVAIG 804
            I+A EIS I++++I+ +  E ++  +G VL VGDGIAR+YGLD V AGE+VEF  G  G+ALNLE+ NVGVV+ G    I+EG +VK TG I  +PV    LGRV++AL  PIDG+G I+A++   ++  APGII R+SV+EP+ TGL AID++IP+GRGQREL+IGDRQTGKTA+  DTILNQ+        G  + CVYVAIG
Sbjct:    3 IRAAEISAILKDQIKNFGNEAEVSEVGQVLSVGDGIARVYGLDNVQAGEMVEFPGGIRGMALNLEADNVGVVIFGSDRSIKEGDTVKRTGAIVDVPVGPELLGRVVDALGNPIDGKGPINAAKRSRVDVKAPGIIPRKSVHEPMSTGLKAIDALIPVGRGQRELVIGDRQTGKTAIILDTILNQKAIHDNGPDGDKLYCVYVAIG 207          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_RHOSK (ATP synthase subunit alpha OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=atpA PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 6.174e-59
Identity = 114/207 (55.07%), Postives = 151/207 (72.95%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQN----------VICVYVAIG 804
            I+A EIS I++E+I+ + ++ ++  +G VL VGDGIAR++GLD V AGE+VEF  G  G+ALNLE  NVGVV+ GD   I+EG +VK T  I  +P  +A LGRV++ L  PIDG+G I+A+E R+ +  APGII R+ V+EP+ TGL ++D+MIPIGRGQRELIIGDRQTGKTA+A DTILNQ+  N          + C+YVAIG
Sbjct:    3 IQAAEISAILKEQIKNFGQQAEVAEVGRVLSVGDGIARVHGLDNVQAGEMVEFPGGIRGMALNLEVDNVGVVIFGDDRSIKEGDTVKRTKSIVDVPAGDALLGRVVDGLGNPIDGKGPIAATERRVADVKAPGIIPRKGVHEPMATGLKSVDAMIPIGRGQRELIIGDRQTGKTAIALDTILNQKSYNEAAGDDESKKLYCIYVAIG 209          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_RHOS4 (ATP synthase subunit alpha OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=atpA PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 6.174e-59
Identity = 114/207 (55.07%), Postives = 151/207 (72.95%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQN----------VICVYVAIG 804
            I+A EIS I++E+I+ + ++ ++  +G VL VGDGIAR++GLD V AGE+VEF  G  G+ALNLE  NVGVV+ GD   I+EG +VK T  I  +P  +A LGRV++ L  PIDG+G I+A+E R+ +  APGII R+ V+EP+ TGL ++D+MIPIGRGQRELIIGDRQTGKTA+A DTILNQ+  N          + C+YVAIG
Sbjct:    3 IQAAEISAILKEQIKNFGQQAEVAEVGRVLSVGDGIARVHGLDNVQAGEMVEFPGGIRGMALNLEVDNVGVVIFGDDRSIKEGDTVKRTKSIVDVPAGDALLGRVVDGLGNPIDGKGPIAATERRVADVKAPGIIPRKGVHEPMATGLKSVDAMIPIGRGQRELIIGDRQTGKTAIALDTILNQKSYNEAAGDDESKKLYCIYVAIG 209          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_RALEH (ATP synthase subunit alpha OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=atpA PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 6.174e-59
Identity = 110/197 (55.84%), Postives = 148/197 (75.13%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            +   EIS +I+ RI     E ++ N GTV+ V DGI R++GL  VM GE++EF   T G+ALNLE  +VG V++G+   I EG +VK TG+I ++PV +  LGRV+N L +PIDG+G I+A E+ +IE  APG+I+R+SV +P+QTGL +ID+M+PIGRGQRELIIGDRQTGKTAVA D I+NQ+G+ V CVYVA+G
Sbjct:    3 LNPSEISELIKSRISGLGAEAEVRNTGTVISVTDGICRVHGLSGVMQGEMLEFPGNTFGLALNLERDSVGAVVLGEYEHISEGDTVKCTGRILEVPVGKELLGRVVNTLGQPIDGKGPINAKETDVIEKVAPGVIARQSVSQPVQTGLKSIDAMVPIGRGQRELIIGDRQTGKTAVAVDAIINQKGKGVFCVYVAVG 199          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA1_RHOS1 (ATP synthase subunit alpha 1 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=atpA1 PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 6.174e-59
Identity = 114/207 (55.07%), Postives = 151/207 (72.95%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQN----------VICVYVAIG 804
            I+A EIS I++E+I+ + ++ ++  +G VL VGDGIAR++GLD V AGE+VEF  G  G+ALNLE  NVGVV+ GD   I+EG +VK T  I  +P  +A LGRV++ L  PIDG+G I+A+E R+ +  APGII R+ V+EP+ TGL ++D+MIPIGRGQRELIIGDRQTGKTA+A DTILNQ+  N          + C+YVAIG
Sbjct:    3 IQAAEISAILKEQIKNFGQQAEVAEVGRVLSVGDGIARVHGLDNVQAGEMVEFPGGIRGMALNLEVDNVGVVIFGDDRSIKEGDTVKRTKSIVDVPAGDALLGRVVDGLGNPIDGKGPIAATERRVADVKAPGIIPRKGVHEPMATGLKSVDAMIPIGRGQRELIIGDRQTGKTAIALDTILNQKSYNEAAGDDESKKLYCIYVAIG 209          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_HALHL (ATP synthase subunit alpha OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=atpA PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 8.064e-59
Identity = 111/197 (56.35%), Postives = 147/197 (74.62%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            +   EIS +I+ RIE ++   +  N GTV+ VGDGI RI+GL +VM GE++EF + T G+ALNLE  +VG VL+GD   I+EG++VK TG+I ++PV +A LGRV++AL +P DG+G I    S  IE  APG+I+R  V +P+QTGL AIDSM+PIGRGQRELIIGDRQTGKTAVA D I+NQ+   + C+YVA+G
Sbjct:    3 VNPSEISELIKRRIENFDAAAEARNEGTVVSVGDGICRIHGLADVMFGEMLEFPDDTFGMALNLERDSVGAVLLGDYQHIKEGATVKCTGRILEVPVGDAMLGRVVDALGRPTDGKGPIKTEGSEPIEKVAPGVITREGVDQPVQTGLKAIDSMVPIGRGQRELIIGDRQTGKTAVAVDAIINQKDSGIKCIYVAVG 199          
The following BLAST results are available for this feature:
BLAST of CX069529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_RHILO4.727e-5955.12ATP synthase subunit alpha OS=Rhizobium loti GN=at... [more]
ATPA_OCHA44.727e-5956.10ATP synthase subunit alpha OS=Ochrobactrum anthrop... [more]
ATPA_NOVAD4.727e-5955.12ATP synthase subunit alpha OS=Novosphingobium arom... [more]
ATPA_METFK4.727e-5955.84ATP synthase subunit alpha OS=Methylobacillus flag... [more]
ATPA_AGRT54.727e-5955.61ATP synthase subunit alpha OS=Agrobacterium tumefa... [more]
ATPA_RHOSK6.174e-5955.07ATP synthase subunit alpha OS=Rhodobacter sphaeroi... [more]
ATPA_RHOS46.174e-5955.07ATP synthase subunit alpha OS=Rhodobacter sphaeroi... [more]
ATPA_RALEH6.174e-5955.84ATP synthase subunit alpha OS=Ralstonia eutropha (... [more]
ATPA1_RHOS16.174e-5955.07ATP synthase subunit alpha 1 OS=Rhodobacter sphaer... [more]
ATPA_HALHL8.064e-5956.35ATP synthase subunit alpha OS=Halorhodospira halop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11A09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11A09-B17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069529 ID=CX069529; Name=CX069529; organism=Citrus sinensis; type=EST; length=804bp
GTCCGACAACGGGTTTTCCAACAAGCTTTACAAGGAGCGCTCGGAACTCT
GAATAGTTGTTTGAACAAGGAGTTACATTTACGTACCATTAGTGCCAATA
TTGGCATGTTTGGAGCGATGAAAGAAATAACTGATTAGTCCTTTTACTGT
AGGCACATTATTTTTTTTTTTTTTTTTAAGAAAAAAAAGAATTAAGAAAT
ACTTATGACAACAATTAAAGCCGACGAAATTAGTAATATTATCCGCGAAC
GTATTGAGCAATATAATAGAGAAGTAAAGATTGTAAATATTGGGACCGTA
CTTCAAGTAGGCGACGGCATCGCCCGTATTTATGGTCTTGATGAAGTAAT
GGCAGGTGAATTAGTAGAATTTGAAGAGGGTACAATAGGCATTGCTCTGA
ATTTGGAATCAACTAATGTTGGTGTTGTTTTAATGGGTGACGGTTTAATG
ATACAAGAAGGAAGTTCTGTAAAAGCAACCGGAAAAATTGCTCAGATACC
AGTAAGCGAGGCTTATTTAGGTCGTGTTATAAATGCCCTGGCTAAACCTA
TTGATGGTCGAGGTGAAATTTCAGCTTCTGAATCTCGATTAATTGAATCC
CCTGCTCCGGGTATTATTTCGAGACGTTCCGTATATGAGCCTCTTCAAAC
AGGACTTATTGCTATTGATTCGATGATCCCTATCGGACGCGGTCAGCGAG
AATTAATTATTGGGGACAGACAGACCGGTAAAACGGCAGTAGCCACGGAT
ACGATTCTCAACCAACAAGGGCAAAATGTAATATGTGTTTATGTAGCTAT
TGGT
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