CX069529

Overview
NameCX069529
Unique NameCX069529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_ERYLH (ATP synthase subunit alpha OS=Erythrobacter litoralis (strain HTCC2594) GN=atpA PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 8.064e-59
Identity = 114/205 (55.61%), Postives = 150/205 (73.17%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ--------QGQNVICVYVAIG 804
            I+A EIS +I+++I  +  E ++  +G+VL VGDGIARI+GLD V AGE+VEF  G  G+ALNLE+ NVGVV+ G    I+EG +VK T  I  +PV +A LGRV++AL  PIDG+G I  +E R +E  APGII R+SV EP+Q+GL AID+++P+GRGQRELIIGDRQTGKTAVA DT +NQ        + + + CVYVA+G
Sbjct:    3 IRAAEISKVIKDQIANFGTEAQVSEVGSVLSVGDGIARIHGLDNVQAGEMVEFANGVQGMALNLEADNVGVVIFGSDAEIKEGDNVKRTETIVDVPVGKALLGRVVDALGNPIDGKGPIETTERRRVELKAPGIIPRKSVDEPVQSGLKAIDALVPVGRGQRELIIGDRQTGKTAVAIDTFINQKTVNESDDESKKLYCVYVAVG 207          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_BRAJA (ATP synthase subunit alpha OS=Bradyrhizobium japonicum GN=atpA PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 8.064e-59
Identity = 117/205 (57.07%), Postives = 150/205 (73.17%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQN--------VICVYVAIG 804
            I+A EIS I++++I+ + +E ++  +G VL VGDGIAR+YGLD V AGE+VEFE GT G+ALNLE+ NVGVV+ G    I+EG +VK T  I   PV +  LGRV++AL  PIDG+G I A +   ++  APGII R+SV EP+ TGL AID++IPIGRGQRELIIGDRQTGKTA+A DTILNQ+  N        + CVYVA+G
Sbjct:    3 IRAAEISAILKDQIKNFGQEAEVSEVGQVLSVGDGIARVYGLDNVQAGEMVEFENGTRGMALNLETDNVGVVIFGADREIKEGQTVKRTRAIVDAPVGKGLLGRVVDALGNPIDGKGPIQADKRMRVDVKAPGIIPRKSVSEPMATGLKAIDALIPIGRGQRELIIGDRQTGKTAIALDTILNQKPLNAQPDENIKLYCVYVAVG 207          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPAM_MAIZE (ATP synthase subunit alpha, mitochondrial OS=Zea mays GN=ATPA PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 8.064e-59
Identity = 114/205 (55.61%), Postives = 148/205 (72.20%), Query Frame = 1
Query:  217 KADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQN---------VICVYVAIG 804
            +A E++ ++  R+  +   +K+  IG V+ VGDGIAR+YGL+E+ AGE+VEF  G  GIALNLE+ NVG+V+ G    I+EG  VK TG I  +P  +A LGRV++AL  PIDG+G +S  E R +E  APGII R+SV+EP+QTGL A+DS++PIGRGQRELIIGDRQTGKTA+A DTILNQ+  N         + CVYVAIG
Sbjct:    6 RAAELTTLLESRMINFYTNLKVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGKGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQMNSRGTNESETLYCVYVAIG 210          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_THIFE (ATP synthase subunit alpha OS=Thiobacillus ferrooxidans GN=atpA PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.053e-58
Identity = 109/200 (54.50%), Postives = 150/200 (75.00%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M  +   EIS +IR RI  +   V+  + GT++ + DGI RI+GL++VM GE++E   G  G+A+NLE  NVG V++G+   +QEG  VK TG++ Q+P+ +A LGRV+NAL +P+DG+G I A E  ++E  APG+I R+SV EP+QTG+ +ID+M+PIGRGQRELIIGDRQTGKTAVA D ILNQ+G++V C+YVAIG
Sbjct:    1 MQQLNPSEISELIRARIAGFEGRVETRSQGTIISLSDGILRIHGLEDVMYGEMLELPGGRFGLAMNLEQDNVGAVVLGEFSGLQEGDVVKCTGRVMQVPIGKALLGRVVNALGQPVDGKGAIDAEEFDVLEKIAPGVIDRQSVDEPMQTGIKSIDAMVPIGRGQRELIIGDRQTGKTAVAVDAILNQKGKDVQCIYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_SILST (ATP synthase subunit alpha OS=Silicibacter sp. (strain TM1040) GN=atpA PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.053e-58
Identity = 113/207 (54.59%), Postives = 149/207 (71.98%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQN----------VICVYVAIG 804
            I+A EIS I++++I+ + +E ++  IG VL VGDGIAR+YGLD V AGE+VEF  G +G+ALNLES NVGVV+ G    I+EG +VK T  I  +P     LGRV++ L  P+DG+G I A E ++ +  APGII R+SV+EP+ TGL ++D+MIP+GRGQRELIIGDRQTGKTA+A DTILNQ+  N          + CVYVA+G
Sbjct:    3 IQAAEISAILKDQIKNFGQEAEVAEIGRVLSVGDGIARVYGLDNVQAGEMVEFPGGIMGMALNLESDNVGVVIFGSDRDIKEGDTVKRTNSIVDVPAGPELLGRVVDGLGNPLDGKGPIEAKERKVADVKAPGIIPRKSVHEPMATGLKSVDAMIPVGRGQRELIIGDRQTGKTAIALDTILNQKSYNDAAGDDDSKKLYCVYVAVG 209          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_ROSS1 (ATP synthase subunit alpha OS=Roseiflexus sp. (strain RS-1) GN=atpA PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.053e-58
Identity = 113/195 (57.95%), Postives = 149/195 (76.41%), Query Frame = 1
Query:  238 IIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEF------EEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            ++R   E  + + K+VN+GTV+QVGDG+ARI GL++ MA EL+EF       E   GIALNLE  +V  +++GD L I+EG  V +TG++  +PV +A +GRV+NAL +PIDG+G I  +  R IE  APG+I+R+SV  P+QTG+IAIDSMIPIGRGQRELIIGDRQTGKTAVA DTI+NQ+GQ ++C+YVAIG
Sbjct:   13 LLRSIREGVDLQPKMVNVGTVIQVGDGVARISGLEQAMASELLEFPPKAGRSEPVYGIALNLEKDSVSAIILGDYLGIEEGDQVNSTGRVISVPVGQALIGRVVNALGQPIDGKGPIQTTTYRPIERIAPGVITRKSVDTPVQTGIIAIDSMIPIGRGQRELIIGDRQTGKTAVAIDTIINQKGQGMVCIYVAIG 207          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_RALME (ATP synthase subunit alpha OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=atpA PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.053e-58
Identity = 110/197 (55.84%), Postives = 149/197 (75.63%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            +   EIS +I+ RI     + ++ N GTV+ V DGI R++GL  VM GE++EF   T G+ALNLE  +VG V++G+   I EG +VK TG+I ++PV +  LGRV+N L +PIDG+G I+A E+ +IE  APG+I+R+SV +P+QTGL +ID+M+PIGRGQRELIIGDRQTGKTAVA D+I+NQ+G+ V CVYVAIG
Sbjct:    3 LNPSEISELIKSRISGLGADAEVRNTGTVISVTDGICRVHGLSGVMQGEMLEFPGNTYGLALNLERDSVGAVVLGEYEHISEGDTVKCTGRILEVPVGKELLGRVVNTLGQPIDGKGPINAKETDVIEKVAPGVIARQSVSQPVQTGLKSIDAMVPIGRGQRELIIGDRQTGKTAVAVDSIINQKGKGVFCVYVAIG 199          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_DESDA (ATP synthase subunit alpha OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=atpA PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.053e-58
Identity = 115/197 (58.38%), Postives = 145/197 (73.60%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            IKA+EIS II ++I+ Y + V++   GTVL VGDGIAR+YG+   M+ EL+EF  G +G+ LNLE  NVGV L+G  + I+EG  VK TGKI  +PV +  +GRV+N L +PIDG G I A+E R +E  APGII+R+SV+EP+ TGL AID+M PIGRGQRELIIGDRQTGKTAV  D IL Q+   + C YVAIG
Sbjct:    3 IKAEEISKIIEDQIQNYEQRVEMSETGTVLYVGDGIARVYGVQNAMSMELLEFPGGIMGMVLNLEEDNVGVALLGSDVGIKEGDPVKRTGKIFSVPVGDGVMGRVLNPLGEPIDGLGPIDAAEVRPVEIKAPGIIARKSVHEPMPTGLKAIDAMTPIGRGQRELIIGDRQTGKTAVCLDAILAQKETGIHCFYVAIG 199          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_ACIF5 (ATP synthase subunit alpha OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=atpA PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.053e-58
Identity = 109/200 (54.50%), Postives = 150/200 (75.00%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M  +   EIS +IR RI  +   V+  + GT++ + DGI RI+GL++VM GE++E   G  G+A+NLE  NVG V++G+   +QEG  VK TG++ Q+P+ +A LGRV+NAL +P+DG+G I A E  ++E  APG+I R+SV EP+QTG+ +ID+M+PIGRGQRELIIGDRQTGKTAVA D ILNQ+G++V C+YVAIG
Sbjct:    1 MQQLNPSEISELIRARIAGFEGRVETRSQGTIISLSDGILRIHGLEDVMYGEMLELPGGRFGLAMNLEQDNVGAVVLGEFSGLQEGDVVKCTGRVMQVPIGKALLGRVVNALGQPVDGKGAIDAEEFDVLEKIAPGVIDRQSVDEPMQTGIKSIDAMVPIGRGQRELIIGDRQTGKTAVAVDAILNQKGKDVQCIYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_ACIF2 (ATP synthase subunit alpha OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=atpA PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.053e-58
Identity = 109/200 (54.50%), Postives = 150/200 (75.00%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M  +   EIS +IR RI  +   V+  + GT++ + DGI RI+GL++VM GE++E   G  G+A+NLE  NVG V++G+   +QEG  VK TG++ Q+P+ +A LGRV+NAL +P+DG+G I A E  ++E  APG+I R+SV EP+QTG+ +ID+M+PIGRGQRELIIGDRQTGKTAVA D ILNQ+G++V C+YVAIG
Sbjct:    1 MQQLNPSEISELIRARIAGFEGRVETRSQGTIISLSDGILRIHGLEDVMYGEMLELPGGRFGLAMNLEQDNVGAVVLGEFSGLQEGDVVKCTGRVMQVPIGKALLGRVVNALGQPVDGKGAIDAEEFDVLEKIAPGVIDRQSVDEPMQTGIKSIDAMVPIGRGQRELIIGDRQTGKTAVAVDAILNQKGKDVQCIYVAIG 200          
The following BLAST results are available for this feature:
BLAST of CX069529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_ERYLH8.064e-5955.61ATP synthase subunit alpha OS=Erythrobacter litora... [more]
ATPA_BRAJA8.064e-5957.07ATP synthase subunit alpha OS=Bradyrhizobium japon... [more]
ATPAM_MAIZE8.064e-5955.61ATP synthase subunit alpha, mitochondrial OS=Zea m... [more]
ATPA_THIFE1.053e-5854.50ATP synthase subunit alpha OS=Thiobacillus ferroox... [more]
ATPA_SILST1.053e-5854.59ATP synthase subunit alpha OS=Silicibacter sp. (st... [more]
ATPA_ROSS11.053e-5857.95ATP synthase subunit alpha OS=Roseiflexus sp. (str... [more]
ATPA_RALME1.053e-5855.84ATP synthase subunit alpha OS=Ralstonia metallidur... [more]
ATPA_DESDA1.053e-5858.38ATP synthase subunit alpha OS=Desulfovibrio desulf... [more]
ATPA_ACIF51.053e-5854.50ATP synthase subunit alpha OS=Acidithiobacillus fe... [more]
ATPA_ACIF21.053e-5854.50ATP synthase subunit alpha OS=Acidithiobacillus fe... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11A09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11A09-B17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069529 ID=CX069529; Name=CX069529; organism=Citrus sinensis; type=EST; length=804bp
GTCCGACAACGGGTTTTCCAACAAGCTTTACAAGGAGCGCTCGGAACTCT
GAATAGTTGTTTGAACAAGGAGTTACATTTACGTACCATTAGTGCCAATA
TTGGCATGTTTGGAGCGATGAAAGAAATAACTGATTAGTCCTTTTACTGT
AGGCACATTATTTTTTTTTTTTTTTTTAAGAAAAAAAAGAATTAAGAAAT
ACTTATGACAACAATTAAAGCCGACGAAATTAGTAATATTATCCGCGAAC
GTATTGAGCAATATAATAGAGAAGTAAAGATTGTAAATATTGGGACCGTA
CTTCAAGTAGGCGACGGCATCGCCCGTATTTATGGTCTTGATGAAGTAAT
GGCAGGTGAATTAGTAGAATTTGAAGAGGGTACAATAGGCATTGCTCTGA
ATTTGGAATCAACTAATGTTGGTGTTGTTTTAATGGGTGACGGTTTAATG
ATACAAGAAGGAAGTTCTGTAAAAGCAACCGGAAAAATTGCTCAGATACC
AGTAAGCGAGGCTTATTTAGGTCGTGTTATAAATGCCCTGGCTAAACCTA
TTGATGGTCGAGGTGAAATTTCAGCTTCTGAATCTCGATTAATTGAATCC
CCTGCTCCGGGTATTATTTCGAGACGTTCCGTATATGAGCCTCTTCAAAC
AGGACTTATTGCTATTGATTCGATGATCCCTATCGGACGCGGTCAGCGAG
AATTAATTATTGGGGACAGACAGACCGGTAAAACGGCAGTAGCCACGGAT
ACGATTCTCAACCAACAAGGGCAAAATGTAATATGTGTTTATGTAGCTAT
TGGT
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