CX069529

Overview
NameCX069529
Unique NameCX069529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_THENN (ATP synthase subunit alpha OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=atpA PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.346e-58
Identity = 111/198 (56.06%), Postives = 149/198 (75.25%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEF-EEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            I   EI+ ++ E+I+ +  ++ + + G V+QVGDGIAR+YGL++VM  ELVEF E G  G+A NLE  NVG++++G+   I+EG +V+   +I ++PV E  LGRV+N L +P+DG+G I+A   R IE  APG+I R+ V  PLQTG+ AIDSMIPIGRGQRELIIGDRQTGKTA+A DTI+NQ+GQ V C+YVAIG
Sbjct:    3 INPGEITKVLEEKIKSFEEKIDLEDTGKVIQVGDGIARVYGLNKVMVSELVEFVETGVKGVAFNLEEDNVGIIVLGEYKDIKEGHTVRRLKRIIEVPVGEELLGRVVNPLGEPLDGKGPINAKNFRPIEIKAPGVIYRKPVDTPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKGQGVYCIYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_SILPO (ATP synthase subunit alpha OS=Silicibacter pomeroyi GN=atpA PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.346e-58
Identity = 116/207 (56.04%), Postives = 149/207 (71.98%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQN----------VICVYVAIG 804
            I+A EIS I++++I+ + +E ++  IG VL VGDGIAR+YGLD V AGE+VEF  G +G+ALNLE+ NVGVV+ G    I+EG +VK T  I  +P  +  LGRV++ L  PIDG+G I+A    + +  APGII R+SV+EP+ TGL A+DSMIPIGRGQRELIIGDRQTGKTA+A DTILNQ+  N          + CVYVAIG
Sbjct:    3 IQAAEISAILKDQIKNFGQEAEVAEIGRVLSVGDGIARVYGLDNVQAGEMVEFPGGIMGMALNLENDNVGVVIFGSDRDIKEGDTVKRTNSIVDVPQGDELLGRVVDGLGNPIDGKGPINAKLRGVADVKAPGIIPRKSVHEPMATGLKAVDSMIPIGRGQRELIIGDRQTGKTAIALDTILNQKSYNDAAGDDESKKLYCVYVAIG 209          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_DESVM (ATP synthase subunit alpha OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=atpA PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.346e-58
Identity = 114/197 (57.87%), Postives = 144/197 (73.10%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            IKA+EIS II E+I+ Y + V++   GTVL VGDGIAR+YG+   MA EL+EF  G +G+ LNLE  NVGV L+G+   I+EG  VK TGKI  +PV +  +GRV+N L +PIDG G + A E R +E  APGII+R+SV++P+ TG+ AID+M PIGRGQRELIIGDRQTGKTAV  D IL Q+   + C YVAIG
Sbjct:    3 IKAEEISKIIEEQIQSYEQRVEMSETGTVLSVGDGIARVYGVRNAMAMELLEFPGGLMGMVLNLEEDNVGVALLGEDTGIKEGDPVKRTGKIFSVPVGDEVMGRVLNPLGQPIDGLGPLEAKEFRPVELKAPGIIARKSVHQPMPTGIKAIDAMTPIGRGQRELIIGDRQTGKTAVCIDAILAQRDTGIRCFYVAIG 199          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPAM_WHEAT (ATP synthase subunit alpha, mitochondrial OS=Triticum aestivum GN=ATPA PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.346e-58
Identity = 113/205 (55.12%), Postives = 147/205 (71.71%), Query Frame = 1
Query:  217 KADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQN---------VICVYVAIG 804
            +A E++ ++  R+  +    ++  IG V+ VGDGIAR+YGL+E+ AGE+VEF  G  GIALNLE+ NVG+V+ G    I+EG  VK TG I  +P  +A LGRV++AL  PIDG+G +S  E R +E  APGII R+SV+EP+QTGL A+DS++PIGRGQRELIIGDRQTGKTA+A DTILNQ+  N         + CVYVAIG
Sbjct:    6 RAAELTTLLESRMTNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGKGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQMNSRGTNESETLYCVYVAIG 210          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPAM_ORYSJ (ATP synthase subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=ATPA PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.346e-58
Identity = 113/205 (55.12%), Postives = 147/205 (71.71%), Query Frame = 1
Query:  217 KADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQN---------VICVYVAIG 804
            +A E++ ++  R+  +    ++  IG V+ VGDGIAR+YGL+E+ AGE+VEF  G  GIALNLE+ NVG+V+ G    I+EG  VK TG I  +P  +A LGRV++AL  PIDG+G +S  E R +E  APGII R+SV+EP+QTGL A+DS++PIGRGQRELIIGDRQTGKTA+A DTILNQ+  N         + CVYVAIG
Sbjct:    6 RAAELTTLLESRMTNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGKGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQMNSRGTNESETLYCVYVAIG 210          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPAM_ORYSI (ATP synthase subunit alpha, mitochondrial OS=Oryza sativa subsp. indica GN=ATPA PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.346e-58
Identity = 113/205 (55.12%), Postives = 147/205 (71.71%), Query Frame = 1
Query:  217 KADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQN---------VICVYVAIG 804
            +A E++ ++  R+  +    ++  IG V+ VGDGIAR+YGL+E+ AGE+VEF  G  GIALNLE+ NVG+V+ G    I+EG  VK TG I  +P  +A LGRV++AL  PIDG+G +S  E R +E  APGII R+SV+EP+QTGL A+DS++PIGRGQRELIIGDRQTGKTA+A DTILNQ+  N         + CVYVAIG
Sbjct:    6 RAAELTTLLESRMTNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGKGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQMNSRGTNESETLYCVYVAIG 210          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPAM_ORYSA (ATP synthase subunit alpha, mitochondrial OS=Oryza sativa GN=ATPA PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.346e-58
Identity = 113/205 (55.12%), Postives = 147/205 (71.71%), Query Frame = 1
Query:  217 KADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQN---------VICVYVAIG 804
            +A E++ ++  R+  +    ++  IG V+ VGDGIAR+YGL+E+ AGE+VEF  G  GIALNLE+ NVG+V+ G    I+EG  VK TG I  +P  +A LGRV++AL  PIDG+G +S  E R +E  APGII R+SV+EP+QTGL A+DS++PIGRGQRELIIGDRQTGKTA+A DTILNQ+  N         + CVYVAIG
Sbjct:    6 RAAELTTLLESRMTNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGKGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQMNSRGTNESETLYCVYVAIG 210          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_SPHAL (ATP synthase subunit alpha OS=Sphingopyxis alaskensis GN=atpA PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.064e-58
Identity = 110/205 (53.66%), Postives = 146/205 (71.22%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQN--------VICVYVAIG 804
            I+A EIS +I+++I  +  +  +  IG+VL VGDGIAR++GLD V AGE+VEF  G  G+ALNLE+ NVG+V+ G    I+EG  VK TG I  +PV +  LGRV++ L  PIDG+G I A +   +E  APGII R SV+EP+QTGL A+D+++P+GRGQRELIIGDRQTGKTAVA DT +NQ+  N        + C+YVA+G
Sbjct:    3 IRAAEISKVIKDQIANFGTDATVTEIGSVLSVGDGIARVHGLDNVQAGEMVEFANGVKGMALNLEADNVGIVIFGSDAAIKEGDQVKRTGTIVDVPVGKGLLGRVVDGLGNPIDGKGPIKADKRMRVEVKAPGIIPRTSVHEPVQTGLKALDALVPVGRGQRELIIGDRQTGKTAVAIDTFINQKAANAGDDESKKLYCIYVAVG 207          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_POLSQ (ATP synthase subunit alpha OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=atpA PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.064e-58
Identity = 111/197 (56.35%), Postives = 147/197 (74.62%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            +   EIS +I+ RI +   + ++ N GTV+ V DGI R++GL  VM GE++EF   TIG+ALNLE  +VG V++G+   I+EG  VK TG+I ++PV    LGRV+NAL +PIDG+G I+   +  IE  APG+I+R+SV +P+QTGL AID+M+PIGRGQRELIIGDRQTGKTAVA D I+NQ+G+ V CVYVAIG
Sbjct:    3 LNPSEISELIKSRISEMGVDSQVRNEGTVISVTDGICRVHGLSGVMQGEMLEFPNNTIGLALNLERDSVGAVVLGEYTHIKEGDPVKCTGRILEVPVGPELLGRVVNALGQPIDGKGPINTKLTDFIEKVAPGVIARQSVSQPVQTGLKAIDAMVPIGRGQRELIIGDRQTGKTAVAVDAIINQKGKGVYCVYVAIG 199          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_BRUO2 (ATP synthase subunit alpha OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=atpA PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.064e-58
Identity = 115/205 (56.10%), Postives = 147/205 (71.71%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQ--------GQNVICVYVAIG 804
            I+A EIS I++E+I+ + +E ++  +G VL VGDGIAR+YGLD V AGE+VEF  G  G+ALNLES NVGVV+ G    I+EG  VK TG I  +PV    LGRV++AL  PIDG+G I A E R ++  APGII R+SV+EP+ TGL AID++IP+GRGQREL+IGDRQTGKTA+  DT LNQ+           + CVYVA+G
Sbjct:    3 IRAAEISAILKEQIKNFGKEAEVSEVGQVLFVGDGIARVYGLDNVQAGEMVEFPGGIRGMALNLESDNVGVVIFGADRDIKEGDVVKRTGAIVDVPVGPELLGRVVDALGNPIDGKGPIKAKERRRVDVKAPGIIPRKSVHEPMSTGLKAIDALIPVGRGQRELVIGDRQTGKTAIILDTFLNQKPIHDNGPDKDKLYCVYVAVG 207          
The following BLAST results are available for this feature:
BLAST of CX069529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_THENN2.346e-5856.06ATP synthase subunit alpha OS=Thermotoga neapolita... [more]
ATPA_SILPO2.346e-5856.04ATP synthase subunit alpha OS=Silicibacter pomeroy... [more]
ATPA_DESVM2.346e-5857.87ATP synthase subunit alpha OS=Desulfovibrio vulgar... [more]
ATPAM_WHEAT2.346e-5855.12ATP synthase subunit alpha, mitochondrial OS=Triti... [more]
ATPAM_ORYSJ2.346e-5855.12ATP synthase subunit alpha, mitochondrial OS=Oryza... [more]
ATPAM_ORYSI2.346e-5855.12ATP synthase subunit alpha, mitochondrial OS=Oryza... [more]
ATPAM_ORYSA2.346e-5855.12ATP synthase subunit alpha, mitochondrial OS=Oryza... [more]
ATPA_SPHAL3.064e-5853.66ATP synthase subunit alpha OS=Sphingopyxis alasken... [more]
ATPA_POLSQ3.064e-5856.35ATP synthase subunit alpha OS=Polynucleobacter sp.... [more]
ATPA_BRUO23.064e-5856.10ATP synthase subunit alpha OS=Brucella ovis (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_11A09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11A09-B17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069529 ID=CX069529; Name=CX069529; organism=Citrus sinensis; type=EST; length=804bp
GTCCGACAACGGGTTTTCCAACAAGCTTTACAAGGAGCGCTCGGAACTCT
GAATAGTTGTTTGAACAAGGAGTTACATTTACGTACCATTAGTGCCAATA
TTGGCATGTTTGGAGCGATGAAAGAAATAACTGATTAGTCCTTTTACTGT
AGGCACATTATTTTTTTTTTTTTTTTTAAGAAAAAAAAGAATTAAGAAAT
ACTTATGACAACAATTAAAGCCGACGAAATTAGTAATATTATCCGCGAAC
GTATTGAGCAATATAATAGAGAAGTAAAGATTGTAAATATTGGGACCGTA
CTTCAAGTAGGCGACGGCATCGCCCGTATTTATGGTCTTGATGAAGTAAT
GGCAGGTGAATTAGTAGAATTTGAAGAGGGTACAATAGGCATTGCTCTGA
ATTTGGAATCAACTAATGTTGGTGTTGTTTTAATGGGTGACGGTTTAATG
ATACAAGAAGGAAGTTCTGTAAAAGCAACCGGAAAAATTGCTCAGATACC
AGTAAGCGAGGCTTATTTAGGTCGTGTTATAAATGCCCTGGCTAAACCTA
TTGATGGTCGAGGTGAAATTTCAGCTTCTGAATCTCGATTAATTGAATCC
CCTGCTCCGGGTATTATTTCGAGACGTTCCGTATATGAGCCTCTTCAAAC
AGGACTTATTGCTATTGATTCGATGATCCCTATCGGACGCGGTCAGCGAG
AATTAATTATTGGGGACAGACAGACCGGTAAAACGGCAGTAGCCACGGAT
ACGATTCTCAACCAACAAGGGCAAAATGTAATATGTGTTTATGTAGCTAT
TGGT
back to top