CX069529

Overview
NameCX069529
Unique NameCX069529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3888 contig Csv1_Contig3888:427..1232. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_SPHWW (ATP synthase subunit alpha OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=atpA PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 6.826e-58
Identity = 113/205 (55.12%), Postives = 146/205 (71.22%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQN--------VICVYVAIG 804
            I+A EIS +IR++I  +  E +I  +G VL VGDGIARI+GLD V AGE++EF  G  G+ALNLE+ NVG V+ G    I+EG  VK TG I  +PV +  LGRV++ L  PIDG+G I A +   +E  APGII R+SV+EP+QTGL A+D+++P+GRGQRELIIGDRQTGK+AVA DT +NQ+  N        + CVYVAIG
Sbjct:    3 IRAAEISKVIRDQIASFGSEAQISEVGQVLSVGDGIARIHGLDNVQAGEMIEFSNGIKGMALNLEADNVGAVIFGSDSQIKEGDVVKRTGTIVDVPVGKGLLGRVVDGLGNPIDGKGPIVAEQRSRVEVKAPGIIPRKSVHEPVQTGLKALDALVPVGRGQRELIIGDRQTGKSAVAIDTFINQKTANAGTDESKKLYCVYVAIG 207          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_ROSDO (ATP synthase subunit alpha OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=atpA PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 6.826e-58
Identity = 115/207 (55.56%), Postives = 146/207 (70.53%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQN----------VICVYVAIG 804
            I+A EIS I++++I+ + +E ++  +G VL VGDGIAR+YGLD V AGE+VEF  G  G+ALNLES NVGVV+ G    I+EG +VK T  I  +P  +  LGRV++ L  PIDG+G I    + + +  APGII R+SV+EP+ TGL A+DSMIPIGRGQRELIIGDRQTGKTAVA D ILNQ+  N          + CVYVAIG
Sbjct:    3 IQAAEISAILKDQIKNFGQEAEVAEVGRVLSVGDGIARVYGLDNVQAGEMVEFPGGIQGMALNLESDNVGVVIFGSDRDIKEGDTVKRTNSIVSVPTGDELLGRVVDGLGNPIDGKGPIKTKTTSVADVKAPGIIPRKSVHEPMATGLKAVDSMIPIGRGQRELIIGDRQTGKTAVALDAILNQKSYNDAAGDDESKKLYCVYVAIG 209          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_RHORU (ATP synthase subunit alpha OS=Rhodospirillum rubrum GN=atpA PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 6.826e-58
Identity = 116/206 (56.31%), Postives = 146/206 (70.87%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQN---------VICVYVAIG 804
            I+A EIS I++E+I  +  E +   +G VL VGDGIAR+YGLD V AGE+VEF  G  G+ALNLES NVG+V+ G+   I+EG  VK T  I  +PV +  LGRV++ L  PIDG+G++   E +  E  APGII R+SV+EP+QTG+ AIDS+IPIGRGQRELIIGDRQTGKTAV  DTILNQ+  N         + CVYVA+G
Sbjct:    3 IRAAEISAILKEQIANFGTEAESAEVGQVLSVGDGIARVYGLDNVQAGEMVEFANGVKGMALNLESDNVGIVIFGEDRGIKEGDVVKRTQTIVDVPVGKGLLGRVVDGLGNPIDGKGDLVDVERKRAEVKAPGIIPRKSVHEPVQTGIKAIDSLIPIGRGQRELIIGDRQTGKTAVILDTILNQKAVNDKAKDDSEKLFCVYVAVG 208          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_RHORT (ATP synthase subunit alpha OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=atpA PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 6.826e-58
Identity = 116/206 (56.31%), Postives = 146/206 (70.87%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQN---------VICVYVAIG 804
            I+A EIS I++E+I  +  E +   +G VL VGDGIAR+YGLD V AGE+VEF  G  G+ALNLES NVG+V+ G+   I+EG  VK T  I  +PV +  LGRV++ L  PIDG+G++   E +  E  APGII R+SV+EP+QTG+ AIDS+IPIGRGQRELIIGDRQTGKTAV  DTILNQ+  N         + CVYVA+G
Sbjct:    3 IRAAEISAILKEQIANFGTEAESAEVGQVLSVGDGIARVYGLDNVQAGEMVEFANGVKGMALNLESDNVGIVIFGEDRGIKEGDVVKRTQTIVDVPVGKGLLGRVVDGLGNPIDGKGDLVDVERKRAEVKAPGIIPRKSVHEPVQTGIKAIDSLIPIGRGQRELIIGDRQTGKTAVILDTILNQKAVNDKAKDDSEKLFCVYVAVG 208          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_RALPJ (ATP synthase subunit alpha OS=Ralstonia pickettii (strain 12J) GN=atpA PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 6.826e-58
Identity = 111/197 (56.35%), Postives = 146/197 (74.11%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            +   EIS++I+ RIE         N GTV+ V DGI RI+GL  VM GE++EF   T G+ALNLE  +VG V++G+   I EG  VK TG+I ++PV    LGRV+NAL +PIDG+G I+A ++ +IE  APG+I+R+SV +P+QTGL +ID+M+PIGRGQRELIIGDRQTGKTAVA D I+NQ+G+ + CVYVAIG
Sbjct:    3 LNPSEISDLIKTRIEGLKAGADAKNTGTVISVTDGICRIHGLSGVMQGEMLEFPGNTFGLALNLERDSVGAVVLGEYEHISEGDEVKCTGRILEVPVGPELLGRVVNALGQPIDGKGPINAKKTDVIEKVAPGVIARQSVSQPVQTGLKSIDAMVPIGRGQRELIIGDRQTGKTAVAVDAIINQKGKGIFCVYVAIG 199          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_DESDG (ATP synthase subunit alpha OS=Desulfovibrio desulfuricans (strain G20) GN=atpA PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 6.826e-58
Identity = 112/197 (56.85%), Postives = 143/197 (72.59%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            IK +EIS II  +I+ Y + V++   GTVL VGDGIAR+YG+   MA EL+EF  G +G+ LNLE  NVGV L+G    I+EG  VK TGKI  +PV +A +GRV+N L +PIDG G + + E R +E  APGII+R+SV+EP+ TG+ AID+M PIGRGQREL+IGDRQTGKTAV  D IL Q+  ++ C YVAIG
Sbjct:    3 IKTEEISQIIESQIQNYEQRVEMSETGTVLYVGDGIARVYGVRNAMAMELLEFPGGLMGMVLNLEEDNVGVALLGPDTDIKEGDPVKRTGKIFSVPVGDAVMGRVLNPLGQPIDGEGPVDSKEFRPVELKAPGIIARKSVHEPMPTGIKAIDAMTPIGRGQRELVIGDRQTGKTAVCIDAILAQKNTDIHCFYVAIG 199          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_BORPD (ATP synthase subunit alpha OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=atpA PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 6.826e-58
Identity = 111/197 (56.35%), Postives = 141/197 (71.57%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            +   EIS +++ RIE       I   GTV+ V DGI RI+GL +VM GE++EF     G+ALNLE  +VG V++GD   + EG  VK TG+I ++PV     GRV+N L  PIDG+G I   E+ +IE  APG+I+RRSV +PLQTG+ AIDSM+PIGRGQRELIIGDRQTGKTAVA DTI++Q+G+ V CVYVAIG
Sbjct:    3 LNPSEISELLKSRIEGLGASADIRTQGTVVSVTDGITRIHGLSDVMQGEMLEFPNNVFGVALNLERDSVGAVILGDYTGVSEGDQVKTTGRILEVPVGPELKGRVVNTLGVPIDGKGPIDTKETDIIEKVAPGVIARRSVSQPLQTGIKAIDSMVPIGRGQRELIIGDRQTGKTAVAVDTIISQKGKGVTCVYVAIG 199          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPAM_OENBI (ATP synthase subunit alpha, mitochondrial OS=Oenothera biennis GN=ATPA PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 6.826e-58
Identity = 112/205 (54.63%), Postives = 145/205 (70.73%), Query Frame = 1
Query:  217 KADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQN---------VICVYVAIG 804
            +A E++ ++  RI  +    ++  IG V+ VGDGIAR+YGL+E+ AGE+VEF  G  GIALNLE+ NVG+V+ G    I+EG  VK TG I  +P  ++ LGRV++AL  PIDGRG +   E R +E   PGII R+SV+EP+QTGL A+DS++PIGRGQRELIIGDRQTGKTA+A DTILNQ+  N         + CVYVAIG
Sbjct:    6 RAAELTTLLESRITNFYTNFQVDEIGRVISVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKSLLGRVVDALGVPIDGRGALGDHERRRVEVKVPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQMNSRATSESETLYCVYVAIG 210          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_RHOCA (ATP synthase subunit alpha OS=Rhodobacter capsulatus GN=atpA PE=1 SV=3)

HSP 1 Score: 223.787 bits (569), Expect = 8.915e-58
Identity = 113/204 (55.39%), Postives = 147/204 (72.06%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQ-------GQNVICVYVAIG 804
            I+A EIS I++E+I+ + ++ ++  +G VL VGDGIAR++GLD V AGE+VEF  G  G+ALNLE  NVG+V+ G    I+EG +VK T  I  +P  E  LGRV++ L  PIDG+G I A E R+ +  APGII R+SV+EP+ TGL ++D+MIPIGRGQRELIIGDRQTGKTA+A DTILNQ+       G  + C YVAIG
Sbjct:    3 IQAAEISAILKEQIKNFGQDAQVAEVGRVLSVGDGIARVHGLDNVQAGEMVEFPGGIRGMALNLEVDNVGIVIFGSDRDIKEGDTVKRTNAIVDVPAGEGLLGRVVDGLGNPIDGKGPIVAKERRIADVKAPGIIPRKSVHEPMATGLKSVDAMIPIGRGQRELIIGDRQTGKTAIALDTILNQKSYNDANPGNKLHCFYVAIG 206          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_BRAHW (ATP synthase subunit alpha OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=atpA PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 8.915e-58
Identity = 108/197 (54.82%), Postives = 144/197 (73.10%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            IKA EI+ +++E I+ Y  +     +G V++VGDGIARI GL  VMA E++ FE G +G+A NLE   +G +++GD   I+EGS V    +I ++PV +A LGRV+N L  PIDG GEI+  + R+IE PAPGI  R++V +PLQTG+ AIDSM PIGRGQR+LIIGDR TGKT++A D I+NQ+G  VIC+YVAIG
Sbjct:    3 IKASEIAAVLKEEIKNYKADFTPNEVGVVVEVGDGIARIIGLPHVMANEMILFESGAVGLAFNLEEETIGAIVLGDYYGIKEGSKVSRLKRILEVPVGDALLGRVVNPLGVPIDGHGEITTDKRRVIEFPAPGIADRQAVKQPLQTGIKAIDSMTPIGRGQRQLIIGDRGTGKTSIALDAIINQKGTGVICIYVAIG 199          
The following BLAST results are available for this feature:
BLAST of CX069529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_SPHWW6.826e-5855.12ATP synthase subunit alpha OS=Sphingomonas wittich... [more]
ATPA_ROSDO6.826e-5855.56ATP synthase subunit alpha OS=Roseobacter denitrif... [more]
ATPA_RHORU6.826e-5856.31ATP synthase subunit alpha OS=Rhodospirillum rubru... [more]
ATPA_RHORT6.826e-5856.31ATP synthase subunit alpha OS=Rhodospirillum rubru... [more]
ATPA_RALPJ6.826e-5856.35ATP synthase subunit alpha OS=Ralstonia pickettii ... [more]
ATPA_DESDG6.826e-5856.85ATP synthase subunit alpha OS=Desulfovibrio desulf... [more]
ATPA_BORPD6.826e-5856.35ATP synthase subunit alpha OS=Bordetella petrii (s... [more]
ATPAM_OENBI6.826e-5854.63ATP synthase subunit alpha, mitochondrial OS=Oenot... [more]
ATPA_RHOCA8.915e-5855.39ATP synthase subunit alpha OS=Rhodobacter capsulat... [more]
ATPA_BRAHW8.915e-5854.82ATP synthase subunit alpha OS=Brachyspira hyodysen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11A09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11A09-B17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069529 ID=CX069529; Name=CX069529; organism=Citrus sinensis; type=EST; length=804bp
GTCCGACAACGGGTTTTCCAACAAGCTTTACAAGGAGCGCTCGGAACTCT
GAATAGTTGTTTGAACAAGGAGTTACATTTACGTACCATTAGTGCCAATA
TTGGCATGTTTGGAGCGATGAAAGAAATAACTGATTAGTCCTTTTACTGT
AGGCACATTATTTTTTTTTTTTTTTTTAAGAAAAAAAAGAATTAAGAAAT
ACTTATGACAACAATTAAAGCCGACGAAATTAGTAATATTATCCGCGAAC
GTATTGAGCAATATAATAGAGAAGTAAAGATTGTAAATATTGGGACCGTA
CTTCAAGTAGGCGACGGCATCGCCCGTATTTATGGTCTTGATGAAGTAAT
GGCAGGTGAATTAGTAGAATTTGAAGAGGGTACAATAGGCATTGCTCTGA
ATTTGGAATCAACTAATGTTGGTGTTGTTTTAATGGGTGACGGTTTAATG
ATACAAGAAGGAAGTTCTGTAAAAGCAACCGGAAAAATTGCTCAGATACC
AGTAAGCGAGGCTTATTTAGGTCGTGTTATAAATGCCCTGGCTAAACCTA
TTGATGGTCGAGGTGAAATTTCAGCTTCTGAATCTCGATTAATTGAATCC
CCTGCTCCGGGTATTATTTCGAGACGTTCCGTATATGAGCCTCTTCAAAC
AGGACTTATTGCTATTGATTCGATGATCCCTATCGGACGCGGTCAGCGAG
AATTAATTATTGGGGACAGACAGACCGGTAAAACGGCAGTAGCCACGGAT
ACGATTCTCAACCAACAAGGGCAAAATGTAATATGTGTTTATGTAGCTAT
TGGT
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