CX069529

Overview
NameCX069529
Unique NameCX069529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_NYMAL (ATP synthase subunit alpha, chloroplastic OS=Nymphaea alba GN=atpA PE=3 SV=1)

HSP 1 Score: 361.688 bits (927), Expect = 2.739e-99
Identity = 189/200 (94.50%), Postives = 194/200 (97.00%), Query Frame = 1 
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M TI+A+EISNIIRERIEQYNREVKIVN GTVLQVGDGIARI+GLDEVMAGELVEF EGTIGIALNLES NVGVVLMGDGLMIQEGSSVKATG+IAQIPVSEAYLGRVINALAKPIDGRGEI ASE RLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ+GQNVICVYVAIG
Sbjct:    1 MVTIRAEEISNIIRERIEQYNREVKIVNTGTVLQVGDGIARIHGLDEVMAGELVEFAEGTIGIALNLESNNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEILASEYRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQKGQNVICVYVAIG 200
[Close]
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_NUPAD (ATP synthase subunit alpha, chloroplastic OS=Nuphar advena GN=atpA PE=3 SV=1)

HSP 1 Score: 361.303 bits (926), Expect = 3.578e-99
Identity = 189/200 (94.50%), Postives = 194/200 (97.00%), Query Frame = 1 
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M TI+A+EISNIIRERIEQYNREVKIVN GTVLQVGDGIARI+GLDEVMAGELVEFEEGTIGIA NLES NVGVVLMGDGLMIQEGSSVKATG+IAQIPVSEAYLGRVINALAKPIDGRGEI ASE RLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ+GQNVICVYVAIG
Sbjct:    1 MVTIRAEEISNIIRERIEQYNREVKIVNTGTVLQVGDGIARIHGLDEVMAGELVEFEEGTIGIAPNLESNNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEILASEYRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQKGQNVICVYVAIG 200
[Close]
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_ACOCL (ATP synthase subunit alpha, chloroplastic OS=Acorus calamus GN=atpA PE=3 SV=1)

HSP 1 Score: 360.147 bits (923), Expect = 7.971e-99
Identity = 185/200 (92.50%), Postives = 194/200 (97.00%), Query Frame = 1 
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M T++ADEISNIIRERIEQY REVK+VN GTVLQVGDGIARI+GLDEVMAGELVEFEEGTIGIALNLES NVGVVLMGDGL IQEGSSVKATG+IAQIPVSEAYLGRV+NALAKPIDGRGEI+ASE RLIESPAPGIISRRSVYEPLQTGLIAIDSMIP+GRGQRELIIGDRQTGKTAVATDTILNQ+GQNVICVYVAIG
Sbjct:    1 MATLRADEISNIIRERIEQYTREVKVVNTGTVLQVGDGIARIHGLDEVMAGELVEFEEGTIGIALNLESNNVGVVLMGDGLTIQEGSSVKATGRIAQIPVSEAYLGRVVNALAKPIDGRGEIAASEFRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPVGRGQRELIIGDRQTGKTAVATDTILNQKGQNVICVYVAIG 200
[Close]
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_ACOAM (ATP synthase subunit alpha, chloroplastic OS=Acorus americanus GN=atpA PE=3 SV=1)

HSP 1 Score: 360.147 bits (923), Expect = 7.971e-99
Identity = 185/200 (92.50%), Postives = 194/200 (97.00%), Query Frame = 1 
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M T++ADEISNIIRERIEQY REVK+VN GTVLQVGDGIARI+GLDEVMAGELVEFEEGTIGIALNLES NVGVVLMGDGL IQEGSSVKATG+IAQIPVSEAYLGRV+NALAKPIDGRGEI+ASE RLIESPAPGIISRRSVYEPLQTGLIAIDSMIP+GRGQRELIIGDRQTGKTAVATDTILNQ+GQNVICVYVAIG
Sbjct:    1 MATLRADEISNIIRERIEQYTREVKVVNTGTVLQVGDGIARIHGLDEVMAGELVEFEEGTIGIALNLESNNVGVVLMGDGLTIQEGSSVKATGRIAQIPVSEAYLGRVVNALAKPIDGRGEIAASEFRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPVGRGQRELIIGDRQTGKTAVATDTILNQKGQNVICVYVAIG 200
[Close]
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_IPOPU (ATP synthase subunit alpha, chloroplastic OS=Ipomoea purpurea GN=atpA PE=3 SV=1)

HSP 1 Score: 359.377 bits (921), Expect = 1.360e-98
Identity = 188/200 (94.00%), Postives = 191/200 (95.50%), Query Frame = 1 
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M TI+ADEISN+IRERIEQYNREV IVN GTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLES NVGVVLMGDGLMIQEGSSVKAT +IAQIPV EAYLGRVINALA PIDGRGEISAS  RLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG
Sbjct:    1 MVTIQADEISNLIRERIEQYNREVNIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESKNVGVVLMGDGLMIQEGSSVKATARIAQIPVGEAYLGRVINALANPIDGRGEISASGFRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 200
[Close]
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_PELHO (ATP synthase subunit alpha, chloroplastic OS=Pelargonium hortorum GN=atpA PE=3 SV=1)

HSP 1 Score: 357.836 bits (917), Expect = 3.956e-98
Identity = 187/200 (93.50%), Postives = 192/200 (96.00%), Query Frame = 1 
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M  I+ADEI N+IRERIEQYNREVKIVN GTVLQVGDGIARIYGL+EVMAGELVEFEEGTIGIALNLES NVGVVLMG GLMIQEGSSVKATG+I QIPVSEAYLGRVINALAKPIDGRG ISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQG+NVICVYVAIG
Sbjct:    1 MVPIRADEIRNLIRERIEQYNREVKIVNTGTVLQVGDGIARIYGLNEVMAGELVEFEEGTIGIALNLESNNVGVVLMGAGLMIQEGSSVKATGRIVQIPVSEAYLGRVINALAKPIDGRGGISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGKNVICVYVAIG 200
[Close]
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_PEA (ATP synthase subunit alpha, chloroplastic OS=Pisum sativum GN=atpA PE=3 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 8.813e-98
Identity = 183/200 (91.50%), Postives = 192/200 (96.00%), Query Frame = 1 
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M T +ADEIS IIR+RIEQYN EVKIVN GTVLQVGDGIARIYGLD+VMAGELVEF+EGT+GIALNLES NVGVVLMGDGLMIQEGSSVKATG+IAQIPVSE YLGRV+NALAKPIDGRGEIS SESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQN++CVYVAIG
Sbjct:    1 MVTSRADEISQIIRKRIEQYNTEVKIVNTGTVLQVGDGIARIYGLDDVMAGELVEFKEGTVGIALNLESKNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEGYLGRVVNALAKPIDGRGEISTSESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNLVCVYVAIG 200
[Close]
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_LEMMI (ATP synthase subunit alpha, chloroplastic OS=Lemna minor GN=atpA PE=3 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 8.813e-98
Identity = 181/200 (90.50%), Postives = 195/200 (97.50%), Query Frame = 1 
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M TI+ADEIS+IIRERIEQY REVK+VN GTVLQVGDGIAR++GLD+VMAGELVEFEEGT+GIALNLES NVGVVLMGDGL+IQEGSSVKATGKIAQIPVS+ YLGRV+NALAKPIDGRGEISASESRLIESPAPGII+RRSVYEPLQTG+IAID+MIPIGRGQRELIIGDRQTGKTAVATDTILNQ+GQNVICVYVAIG
Sbjct:    1 MVTIRADEISSIIRERIEQYTREVKVVNTGTVLQVGDGIARVHGLDKVMAGELVEFEEGTVGIALNLESNNVGVVLMGDGLLIQEGSSVKATGKIAQIPVSDGYLGRVLNALAKPIDGRGEISASESRLIESPAPGIIARRSVYEPLQTGIIAIDAMIPIGRGQRELIIGDRQTGKTAVATDTILNQKGQNVICVYVAIG 200
[Close]
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_ANTFO (ATP synthase subunit alpha, chloroplastic OS=Anthoceros formosae GN=atpA PE=2 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.556e-94
Identity = 175/200 (87.50%), Postives = 192/200 (96.00%), Query Frame = 1 
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M  I+ DEISNIIR++IEQYN+EVK++NIGTVLQVGDGIARIYGLD+VMAGELVEFE+GT+GIALNLES NVGVVLMGDGL IQEGSSV+ATGKIAQIPVS+AYLGRV+NALA+PIDG+G+I A E RLIESPAPGIISRRSVYEP+QTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ+GQNVICVYVAIG
Sbjct:    1 MVNIRPDEISNIIRKQIEQYNQEVKVINIGTVLQVGDGIARIYGLDKVMAGELVEFEDGTVGIALNLESDNVGVVLMGDGLSIQEGSSVEATGKIAQIPVSDAYLGRVVNALAQPIDGKGQIPAYEFRLIESPAPGIISRRSVYEPMQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQKGQNVICVYVAIG 200
[Close]
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_MARPO (ATP synthase subunit alpha, chloroplastic OS=Marchantia polymorpha GN=atpA PE=3 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 4.526e-94
Identity = 175/200 (87.50%), Postives = 191/200 (95.50%), Query Frame = 1 
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M  I+ DEIS+IIR++IEQYN+EVKIVNIGTVLQVGDGIARIYGLD+VMAGELVEFE+GT+GIALNLES NVG VLMGDGL IQEGSSVKATGKIAQIPVS+AYLGRV+NALA+PIDG+G+I ASE RLIESPAPGIISRRSVYEP+QTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA DTILNQ+GQNV+CVYVAIG
Sbjct:    1 MVNIRPDEISSIIRKQIEQYNQEVKIVNIGTVLQVGDGIARIYGLDKVMAGELVEFEDGTVGIALNLESDNVGAVLMGDGLTIQEGSSVKATGKIAQIPVSDAYLGRVVNALAQPIDGKGQIPASEFRLIESPAPGIISRRSVYEPMQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVAIDTILNQKGQNVVCVYVAIG 200
The following BLAST results are available for this feature:
BLAST of CX069529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_NYMAL2.739e-9994.50ATP synthase subunit alpha, chloroplastic OS=Nymph... [more]
ATPA_NUPAD3.578e-9994.50ATP synthase subunit alpha, chloroplastic OS=Nupha... [more]
ATPA_ACOCL7.971e-9992.50ATP synthase subunit alpha, chloroplastic OS=Acoru... [more]
ATPA_ACOAM7.971e-9992.50ATP synthase subunit alpha, chloroplastic OS=Acoru... [more]
ATPA_IPOPU1.360e-9894.00ATP synthase subunit alpha, chloroplastic OS=Ipomo... [more]
ATPA_PELHO3.956e-9893.50ATP synthase subunit alpha, chloroplastic OS=Pelar... [more]
ATPA_PEA8.813e-9891.50ATP synthase subunit alpha, chloroplastic OS=Pisum... [more]
ATPA_LEMMI8.813e-9890.50ATP synthase subunit alpha, chloroplastic OS=Lemna... [more]
ATPA_ANTFO1.556e-9487.50ATP synthase subunit alpha, chloroplastic OS=Antho... [more]
ATPA_MARPO4.526e-9487.50ATP synthase subunit alpha, chloroplastic OS=March... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11A09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11A09-B17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069529 ID=CX069529; Name=CX069529; organism=Citrus sinensis; type=EST; length=804bp
GTCCGACAACGGGTTTTCCAACAAGCTTTACAAGGAGCGCTCGGAACTCT
GAATAGTTGTTTGAACAAGGAGTTACATTTACGTACCATTAGTGCCAATA
TTGGCATGTTTGGAGCGATGAAAGAAATAACTGATTAGTCCTTTTACTGT
AGGCACATTATTTTTTTTTTTTTTTTTAAGAAAAAAAAGAATTAAGAAAT
ACTTATGACAACAATTAAAGCCGACGAAATTAGTAATATTATCCGCGAAC
GTATTGAGCAATATAATAGAGAAGTAAAGATTGTAAATATTGGGACCGTA
CTTCAAGTAGGCGACGGCATCGCCCGTATTTATGGTCTTGATGAAGTAAT
GGCAGGTGAATTAGTAGAATTTGAAGAGGGTACAATAGGCATTGCTCTGA
ATTTGGAATCAACTAATGTTGGTGTTGTTTTAATGGGTGACGGTTTAATG
ATACAAGAAGGAAGTTCTGTAAAAGCAACCGGAAAAATTGCTCAGATACC
AGTAAGCGAGGCTTATTTAGGTCGTGTTATAAATGCCCTGGCTAAACCTA
TTGATGGTCGAGGTGAAATTTCAGCTTCTGAATCTCGATTAATTGAATCC
CCTGCTCCGGGTATTATTTCGAGACGTTCCGTATATGAGCCTCTTCAAAC
AGGACTTATTGCTATTGATTCGATGATCCCTATCGGACGCGGTCAGCGAG
AATTAATTATTGGGGACAGACAGACCGGTAAAACGGCAGTAGCCACGGAT
ACGATTCTCAACCAACAAGGGCAAAATGTAATATGTGTTTATGTAGCTAT
TGGT
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