CX069529

Overview
NameCX069529
Unique NameCX069529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_CUSRE (ATP synthase subunit alpha, plastid OS=Cuscuta reflexa GN=atpA PE=3 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 2.246e-93
Identity = 178/200 (89.00%), Postives = 188/200 (94.00%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M TI+ADEI NIIRERIEQYNREVKI+N GTVLQVGD IARI+GL EVMAGELVEFEEGTIGIALNLES NVGVVLMGDGLMI+EGSSVKATG+IAQIPV EAYLGRVINA A PIDGRG+IS+S  RLIE+ APGIISRRS+YEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTI+NQQGQNVICVYVAIG
Sbjct:    1 MVTIRADEIRNIIRERIEQYNREVKILNKGTVLQVGDAIARIHGLYEVMAGELVEFEEGTIGIALNLESNNVGVVLMGDGLMIKEGSSVKATGRIAQIPVGEAYLGRVINAQANPIDGRGKISSSAFRLIEASAPGIISRRSIYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTIINQQGQNVICVYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_CYCTA (ATP synthase subunit alpha, chloroplastic OS=Cycas taitungensis GN=atpA PE=3 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 2.934e-93
Identity = 173/200 (86.50%), Postives = 193/200 (96.50%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M TI+ DEIS+IIR++I+QYN+EV++VNIG VLQVGDGIARI+GLDEVMAGELVEFE+GT+GIALNLES NVG VLMGDGLMIQEGSSV+ATGKIAQIPVS+AY GRV+NALA+PIDGRG+I+ASESR IESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTI+NQ+GQ+VICVYVAIG
Sbjct:    1 MVTIRPDEISSIIRKQIKQYNQEVEVVNIGIVLQVGDGIARIHGLDEVMAGELVEFEDGTVGIALNLESNNVGAVLMGDGLMIQEGSSVRATGKIAQIPVSDAYSGRVVNALAQPIDGRGKITASESRSIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTIINQKGQDVICVYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_STAPU (ATP synthase subunit alpha, chloroplastic OS=Staurastrum punctulatum GN=atpA PE=3 SV=1)

HSP 1 Score: 341.273 bits (874), Expect = 3.831e-93
Identity = 172/200 (86.00%), Postives = 190/200 (95.00%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M  I+ DEIS+IIR++IEQYN+EVK+VNIGTVLQVGDGIARIYGLD+VMAGEL+EFE+GT+GIALNLES NVG VLMGDGL IQEGSSVKATGKIAQIPVS+ YLGRV+NAL +PIDG+G+I ASE RLIESPAPGIISRRSVYEP+QTGLIAID+MIPIGRGQRELIIGDRQTGKTAVATDTILNQ+GQNVICVYVAIG
Sbjct:    1 MVNIRPDEISSIIRKQIEQYNQEVKVVNIGTVLQVGDGIARIYGLDKVMAGELLEFEDGTVGIALNLESDNVGAVLMGDGLNIQEGSSVKATGKIAQIPVSDGYLGRVVNALGRPIDGKGDIPASEYRLIESPAPGIISRRSVYEPMQTGLIAIDAMIPIGRGQRELIIGDRQTGKTAVATDTILNQKGQNVICVYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_CUSEX (ATP synthase subunit alpha, plastid OS=Cuscuta exaltata GN=atpA PE=3 SV=1)

HSP 1 Score: 341.273 bits (874), Expect = 3.831e-93
Identity = 177/200 (88.50%), Postives = 186/200 (93.00%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M T++ADEI  IIRERIEQYNREV  +N GTVLQVGDGIARI GLDEVMAGELVEFEEGTIGIALNLES NVGVVLMGDGLMI+EGSSVKATG+IAQIPV EAYLGRVINA A PIDGRG+IS+S  RLIES APGIISRRS+YEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTI+NQQGQNVICVYVAIG
Sbjct:    1 MVTVRADEIRKIIRERIEQYNREVNTLNTGTVLQVGDGIARINGLDEVMAGELVEFEEGTIGIALNLESKNVGVVLMGDGLMIKEGSSVKATGRIAQIPVGEAYLGRVINAQANPIDGRGKISSSAFRLIESSAPGIISRRSIYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTIINQQGQNVICVYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_ZYGCR (ATP synthase subunit alpha, chloroplastic OS=Zygnema circumcarinatum GN=atpA PE=3 SV=1)

HSP 1 Score: 340.887 bits (873), Expect = 5.004e-93
Identity = 172/200 (86.00%), Postives = 191/200 (95.50%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M  I+ DEIS+IIR++IEQY +EVK+VNIGTVLQVGDGIARIYGLD+VMAGEL+EFE+GTIGIALNLES NVG VLMGDGL IQEGSSVKATGKIAQIPVS+ YLGRV+NALA+PIDG+G+I++SE RLIESPAPGIISRRSVYEP+QTGLIAID+MIPIGRGQRELIIGDRQTGKTAVATDTILNQ+GQNVICVYVAIG
Sbjct:    1 MVNIRPDEISSIIRKQIEQYTQEVKVVNIGTVLQVGDGIARIYGLDKVMAGELLEFEDGTIGIALNLESDNVGAVLMGDGLTIQEGSSVKATGKIAQIPVSDGYLGRVVNALARPIDGKGDIASSEFRLIESPAPGIISRRSVYEPMQTGLIAIDAMIPIGRGQRELIIGDRQTGKTAVATDTILNQKGQNVICVYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_WELMI (ATP synthase subunit alpha, chloroplastic OS=Welwitschia mirabilis GN=atpA PE=3 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 1.456e-92
Identity = 171/200 (85.50%), Postives = 191/200 (95.50%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M TI+ DEIS+IIRE+IEQYN EV++VN+GTVLQVGDGIARI+GL EVMAGELVEFE+GT+GIALNLE+ NVGVVLMGDGL I+EGSSVK TGKIAQIPVS+A+LGR++NALA+P+DGRG ISASE RLIESPAPGI+SRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTI+NQ+GQNVICVYVAIG
Sbjct:    1 MITIRPDEISSIIREQIEQYNSEVQVVNMGTVLQVGDGIARIHGLREVMAGELVEFEDGTVGIALNLEAQNVGVVLMGDGLTIKEGSSVKTTGKIAQIPVSDAFLGRIVNALAQPVDGRGPISASEFRLIESPAPGIVSRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTIINQKGQNVICVYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_PSINU (ATP synthase subunit alpha, chloroplastic OS=Psilotum nudum GN=atpA PE=3 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 1.902e-92
Identity = 172/197 (87.31%), Postives = 188/197 (95.43%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            I+ DEI +IIR++IE+Y +EVK+VNIGTVLQVGDGIARIYGLDEVMAGEL+EFE+GT+GIALNLES NVG VLMGDGL IQEG SVKATGKIAQIPVS AYLGRV+NALA+PIDG+G+ISASESRLIESPAPGIISRRSVYEP+QTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ+GQNV CVYVAIG
Sbjct:    6 IRPDEIGSIIRKQIEEYIQEVKVVNIGTVLQVGDGIARIYGLDEVMAGELLEFEDGTVGIALNLESDNVGAVLMGDGLTIQEGGSVKATGKIAQIPVSNAYLGRVVNALAQPIDGKGQISASESRLIESPAPGIISRRSVYEPMQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQKGQNVTCVYVAIG 202          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_HUPLU (ATP synthase subunit alpha, chloroplastic OS=Huperzia lucidula GN=atpA PE=3 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 1.902e-92
Identity = 171/200 (85.50%), Postives = 189/200 (94.50%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M  I+ +EIS++I  +IEQYN+EV++ NIGTVLQVGDGIARIYGL+EVMAGELVEFE+GT+GIALNLES NVG VLMGDGL IQEGSSVKATGKIAQIPVS+AYLGRV+NALA+PIDG+G+I ASESRLIESPAPGIISRRS YEP+QTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ+GQNVICVYVAIG
Sbjct:    1 MVNIRPEEISSVIFRQIEQYNQEVRVFNIGTVLQVGDGIARIYGLNEVMAGELVEFEDGTVGIALNLESNNVGAVLMGDGLTIQEGSSVKATGKIAQIPVSDAYLGRVVNALAQPIDGKGQIPASESRLIESPAPGIISRRSAYEPMQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQKGQNVICVYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_ANEMR (ATP synthase subunit alpha, plastid OS=Aneura mirabilis GN=atpA PE=3 SV=1)

HSP 1 Score: 338.576 bits (867), Expect = 2.484e-92
Identity = 172/200 (86.00%), Postives = 189/200 (94.50%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M  I+ DEISN+IR RIEQYN+EVK+VN GTV QVGDGIARIYGLD+VMAGELV+FE+GT+GIA N ES NVGVVLMGDGL IQEGSSVKATG+IAQIPVSEAYLGRV+NALA+PIDG+G+I ASESRLIESPAPGIISRRSVYEP+QTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ+GQ+VIC+YVAIG
Sbjct:    1 MVNIRPDEISNVIRTRIEQYNQEVKVVNTGTVPQVGDGIARIYGLDKVMAGELVKFEDGTVGIAPNSESDNVGVVLMGDGLTIQEGSSVKATGQIAQIPVSEAYLGRVVNALAQPIDGKGKIPASESRLIESPAPGIISRRSVYEPMQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQKGQDVICIYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_SORBI (ATP synthase subunit alpha, chloroplastic OS=Sorghum bicolor GN=atpA PE=3 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 4.236e-92
Identity = 175/200 (87.50%), Postives = 187/200 (93.50%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M T++ DEI+ I+RERIEQYNR+V I NIG V+QVGDGIARI GL E+M+GELVEF EGT GIALNLES NVG+VLMGDGLMIQEGS VKATG+IAQIPVSEAYLGRVINALAKPIDGRGEI ASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ+GQ+VICVYVAIG
Sbjct:    1 MATLRVDEINKILRERIEQYNRKVGIENIGRVVQVGDGIARIIGLGEIMSGELVEFAEGTRGIALNLESKNVGIVLMGDGLMIQEGSFVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEIVASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQKGQDVICVYVAIG 200          
The following BLAST results are available for this feature:
BLAST of CX069529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_CUSRE2.246e-9389.00ATP synthase subunit alpha, plastid OS=Cuscuta ref... [more]
ATPA_CYCTA2.934e-9386.50ATP synthase subunit alpha, chloroplastic OS=Cycas... [more]
ATPA_STAPU3.831e-9386.00ATP synthase subunit alpha, chloroplastic OS=Staur... [more]
ATPA_CUSEX3.831e-9388.50ATP synthase subunit alpha, plastid OS=Cuscuta exa... [more]
ATPA_ZYGCR5.004e-9386.00ATP synthase subunit alpha, chloroplastic OS=Zygne... [more]
ATPA_WELMI1.456e-9285.50ATP synthase subunit alpha, chloroplastic OS=Welwi... [more]
ATPA_PSINU1.902e-9287.31ATP synthase subunit alpha, chloroplastic OS=Psilo... [more]
ATPA_HUPLU1.902e-9285.50ATP synthase subunit alpha, chloroplastic OS=Huper... [more]
ATPA_ANEMR2.484e-9286.00ATP synthase subunit alpha, plastid OS=Aneura mira... [more]
ATPA_SORBI4.236e-9287.50ATP synthase subunit alpha, chloroplastic OS=Sorgh... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11A09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11A09-B17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069529 ID=CX069529; Name=CX069529; organism=Citrus sinensis; type=EST; length=804bp
GTCCGACAACGGGTTTTCCAACAAGCTTTACAAGGAGCGCTCGGAACTCT
GAATAGTTGTTTGAACAAGGAGTTACATTTACGTACCATTAGTGCCAATA
TTGGCATGTTTGGAGCGATGAAAGAAATAACTGATTAGTCCTTTTACTGT
AGGCACATTATTTTTTTTTTTTTTTTTAAGAAAAAAAAGAATTAAGAAAT
ACTTATGACAACAATTAAAGCCGACGAAATTAGTAATATTATCCGCGAAC
GTATTGAGCAATATAATAGAGAAGTAAAGATTGTAAATATTGGGACCGTA
CTTCAAGTAGGCGACGGCATCGCCCGTATTTATGGTCTTGATGAAGTAAT
GGCAGGTGAATTAGTAGAATTTGAAGAGGGTACAATAGGCATTGCTCTGA
ATTTGGAATCAACTAATGTTGGTGTTGTTTTAATGGGTGACGGTTTAATG
ATACAAGAAGGAAGTTCTGTAAAAGCAACCGGAAAAATTGCTCAGATACC
AGTAAGCGAGGCTTATTTAGGTCGTGTTATAAATGCCCTGGCTAAACCTA
TTGATGGTCGAGGTGAAATTTCAGCTTCTGAATCTCGATTAATTGAATCC
CCTGCTCCGGGTATTATTTCGAGACGTTCCGTATATGAGCCTCTTCAAAC
AGGACTTATTGCTATTGATTCGATGATCCCTATCGGACGCGGTCAGCGAG
AATTAATTATTGGGGACAGACAGACCGGTAAAACGGCAGTAGCCACGGAT
ACGATTCTCAACCAACAAGGGCAAAATGTAATATGTGTTTATGTAGCTAT
TGGT
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