CX069529

Overview
NameCX069529
Unique NameCX069529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_SACOF (ATP synthase subunit alpha, chloroplastic OS=Saccharum officinarum GN=atpA PE=3 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 4.236e-92
Identity = 175/200 (87.50%), Postives = 187/200 (93.50%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M T++ DEI+ I+RERIEQYNR+V I NIG V+QVGDGIARI GL E+M+GELVEF EGT GIALNLES NVG+VLMGDGLMIQEGS VKATG+IAQIPVSEAYLGRVINALAKPIDGRGEI ASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ+GQ+VICVYVAIG
Sbjct:    1 MATLRVDEINKILRERIEQYNRKVGIENIGRVVQVGDGIARIIGLGEIMSGELVEFAEGTRGIALNLESKNVGIVLMGDGLMIQEGSFVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEIVASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQKGQDVICVYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_SACHY (ATP synthase subunit alpha, chloroplastic OS=Saccharum hybrid GN=atpA PE=2 SV=2)

HSP 1 Score: 337.806 bits (865), Expect = 4.236e-92
Identity = 175/200 (87.50%), Postives = 187/200 (93.50%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M T++ DEI+ I+RERIEQYNR+V I NIG V+QVGDGIARI GL E+M+GELVEF EGT GIALNLES NVG+VLMGDGLMIQEGS VKATG+IAQIPVSEAYLGRVINALAKPIDGRGEI ASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ+GQ+VICVYVAIG
Sbjct:    1 MATLRVDEINKILRERIEQYNRKVGIENIGRVVQVGDGIARIIGLGEIMSGELVEFAEGTRGIALNLESKNVGIVLMGDGLMIQEGSFVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEIVASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQKGQDVICVYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_MAIZE (ATP synthase subunit alpha, chloroplastic OS=Zea mays GN=atpA PE=3 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 4.236e-92
Identity = 175/200 (87.50%), Postives = 187/200 (93.50%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M T++ DEI+ I+RERIEQYNR+V I NIG V+QVGDGIARI GL E+M+GELVEF EGT GIALNLES NVG+VLMGDGLMIQEGS VKATG+IAQIPVSEAYLGRVINALAKPIDGRGEI ASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ+GQ+VICVYVAIG
Sbjct:    1 MATLRVDEINKILRERIEQYNRKVGIENIGRVVQVGDGIARIIGLGEIMSGELVEFAEGTRGIALNLESKNVGIVLMGDGLMIQEGSFVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEIVASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQKGQDVICVYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_ORYSJ (ATP synthase subunit alpha, chloroplastic OS=Oryza sativa subsp. japonica GN=atpA PE=3 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 7.226e-92
Identity = 175/200 (87.50%), Postives = 186/200 (93.00%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M T++ DEI  I+RERIEQYNR+V I NIG V+QVGDGIARI GL E+M+GELVEF EGT GIALNLES NVG+VLMGDGLMIQEGS VKATG+IAQIPVSEAYLGRVINALAKPIDGRGEI ASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ+GQ+VICVYVAIG
Sbjct:    1 MATLRVDEIHKILRERIEQYNRKVGIENIGRVVQVGDGIARIIGLGEIMSGELVEFAEGTRGIALNLESKNVGIVLMGDGLMIQEGSFVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEIVASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQKGQDVICVYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_ORYSI (ATP synthase subunit alpha, chloroplastic OS=Oryza sativa subsp. indica GN=atpA PE=3 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 7.226e-92
Identity = 175/200 (87.50%), Postives = 186/200 (93.00%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M T++ DEI  I+RERIEQYNR+V I NIG V+QVGDGIARI GL E+M+GELVEF EGT GIALNLES NVG+VLMGDGLMIQEGS VKATG+IAQIPVSEAYLGRVINALAKPIDGRGEI ASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ+GQ+VICVYVAIG
Sbjct:    1 MATLRVDEIHKILRERIEQYNRKVGIENIGRVVQVGDGIARIIGLGEIMSGELVEFAEGTRGIALNLESKNVGIVLMGDGLMIQEGSFVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEIVASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQKGQDVICVYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_ORYSA (ATP synthase subunit alpha, chloroplastic OS=Oryza sativa GN=atpA PE=3 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 7.226e-92
Identity = 175/200 (87.50%), Postives = 186/200 (93.00%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M T++ DEI  I+RERIEQYNR+V I NIG V+QVGDGIARI GL E+M+GELVEF EGT GIALNLES NVG+VLMGDGLMIQEGS VKATG+IAQIPVSEAYLGRVINALAKPIDGRGEI ASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ+GQ+VICVYVAIG
Sbjct:    1 MATLRVDEIHKILRERIEQYNRKVGIENIGRVVQVGDGIARIIGLGEIMSGELVEFAEGTRGIALNLESKNVGIVLMGDGLMIQEGSFVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEIVASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQKGQDVICVYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_ORYNI (ATP synthase subunit alpha, chloroplastic OS=Oryza nivara GN=atpA PE=3 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 7.226e-92
Identity = 175/200 (87.50%), Postives = 186/200 (93.00%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M T++ DEI  I+RERIEQYNR+V I NIG V+QVGDGIARI GL E+M+GELVEF EGT GIALNLES NVG+VLMGDGLMIQEGS VKATG+IAQIPVSEAYLGRVINALAKPIDGRGEI ASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ+GQ+VICVYVAIG
Sbjct:    1 MATLRVDEIHKILRERIEQYNRKVGIENIGRVVQVGDGIARIIGLGEIMSGELVEFAEGTRGIALNLESKNVGIVLMGDGLMIQEGSFVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEIVASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQKGQDVICVYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_PINTH (ATP synthase subunit alpha, chloroplastic OS=Pinus thunbergii GN=atpA PE=3 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 9.437e-92
Identity = 172/200 (86.00%), Postives = 190/200 (95.00%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M +I+ DEIS+IIR++IEQYN EV++ N+GTVLQVGDGIARI+GLDEVMAGELVEF +GT+GIALNL S NVG VLMGDGLMIQEGSSV+ATGKIAQIPVS+AYLGRV+NALA+PIDG+G+ISASE RLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ+ QNVICVYVAIG
Sbjct:    1 MGSIRLDEISSIIRKQIEQYNNEVRVGNLGTVLQVGDGIARIHGLDEVMAGELVEFGDGTVGIALNLGSDNVGAVLMGDGLMIQEGSSVRATGKIAQIPVSDAYLGRVVNALAQPIDGKGKISASEFRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQKSQNVICVYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_ANGEV (ATP synthase subunit alpha, chloroplastic OS=Angiopteris evecta GN=atpA PE=3 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.610e-91
Identity = 171/199 (85.93%), Postives = 187/199 (93.97%), Query Frame = 1
Query:  208 TTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            T I+ DEIS+ IR+ IE Y +EVK+VN+GTVLQVGDGIARIYGLD+VMAGELVEFE+GT+GIALN ES NVG VLMGDGL IQEGSSVKATGKIAQIPVS+AYLGRV+NALA+PIDG+G+I ASESR IESPAPGIISRRSVYEP+QTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ+GQNVICVYVAIG
Sbjct:    4 TNIRPDEISSSIRKEIEGYTQEVKVVNVGTVLQVGDGIARIYGLDKVMAGELVEFEDGTVGIALNSESDNVGAVLMGDGLTIQEGSSVKATGKIAQIPVSDAYLGRVVNALAQPIDGKGQIPASESRPIESPAPGIISRRSVYEPMQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQKGQNVICVYVAIG 202          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_LOLPR (ATP synthase subunit alpha, chloroplastic OS=Lolium perenne GN=atpA PE=3 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 2.102e-91
Identity = 174/200 (87.00%), Postives = 185/200 (92.50%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M T++ DEI  I+RERIEQYNR+V I NIG V+QVGDGIARI GL E+M+GELVEF EGT GIALNLES NVG+VLMGDGLMIQEGS VKATG+IAQIPVSEAYLGRVINALAKPIDG+GEI ASESRLIESPAP IISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ+GQNVICVYVAIG
Sbjct:    1 MATLRVDEIHKILRERIEQYNRKVGIENIGRVVQVGDGIARIIGLGEIMSGELVEFAEGTRGIALNLESKNVGIVLMGDGLMIQEGSFVKATGRIAQIPVSEAYLGRVINALAKPIDGKGEIIASESRLIESPAPSIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQKGQNVICVYVAIG 200          
The following BLAST results are available for this feature:
BLAST of CX069529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_SACOF4.236e-9287.50ATP synthase subunit alpha, chloroplastic OS=Sacch... [more]
ATPA_SACHY4.236e-9287.50ATP synthase subunit alpha, chloroplastic OS=Sacch... [more]
ATPA_MAIZE4.236e-9287.50ATP synthase subunit alpha, chloroplastic OS=Zea m... [more]
ATPA_ORYSJ7.226e-9287.50ATP synthase subunit alpha, chloroplastic OS=Oryza... [more]
ATPA_ORYSI7.226e-9287.50ATP synthase subunit alpha, chloroplastic OS=Oryza... [more]
ATPA_ORYSA7.226e-9287.50ATP synthase subunit alpha, chloroplastic OS=Oryza... [more]
ATPA_ORYNI7.226e-9287.50ATP synthase subunit alpha, chloroplastic OS=Oryza... [more]
ATPA_PINTH9.437e-9286.00ATP synthase subunit alpha, chloroplastic OS=Pinus... [more]
ATPA_ANGEV1.610e-9185.93ATP synthase subunit alpha, chloroplastic OS=Angio... [more]
ATPA_LOLPR2.102e-9187.00ATP synthase subunit alpha, chloroplastic OS=Loliu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11A09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11A09-B17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069529 ID=CX069529; Name=CX069529; organism=Citrus sinensis; type=EST; length=804bp
GTCCGACAACGGGTTTTCCAACAAGCTTTACAAGGAGCGCTCGGAACTCT
GAATAGTTGTTTGAACAAGGAGTTACATTTACGTACCATTAGTGCCAATA
TTGGCATGTTTGGAGCGATGAAAGAAATAACTGATTAGTCCTTTTACTGT
AGGCACATTATTTTTTTTTTTTTTTTTAAGAAAAAAAAGAATTAAGAAAT
ACTTATGACAACAATTAAAGCCGACGAAATTAGTAATATTATCCGCGAAC
GTATTGAGCAATATAATAGAGAAGTAAAGATTGTAAATATTGGGACCGTA
CTTCAAGTAGGCGACGGCATCGCCCGTATTTATGGTCTTGATGAAGTAAT
GGCAGGTGAATTAGTAGAATTTGAAGAGGGTACAATAGGCATTGCTCTGA
ATTTGGAATCAACTAATGTTGGTGTTGTTTTAATGGGTGACGGTTTAATG
ATACAAGAAGGAAGTTCTGTAAAAGCAACCGGAAAAATTGCTCAGATACC
AGTAAGCGAGGCTTATTTAGGTCGTGTTATAAATGCCCTGGCTAAACCTA
TTGATGGTCGAGGTGAAATTTCAGCTTCTGAATCTCGATTAATTGAATCC
CCTGCTCCGGGTATTATTTCGAGACGTTCCGTATATGAGCCTCTTCAAAC
AGGACTTATTGCTATTGATTCGATGATCCCTATCGGACGCGGTCAGCGAG
AATTAATTATTGGGGACAGACAGACCGGTAAAACGGCAGTAGCCACGGAT
ACGATTCTCAACCAACAAGGGCAAAATGTAATATGTGTTTATGTAGCTAT
TGGT
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