CX069529

Overview
NameCX069529
Unique NameCX069529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3888 contig Csv1_Contig3888:427..1232. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_CUSOB (ATP synthase subunit alpha, plastid OS=Cuscuta obtusiflora GN=atpA PE=3 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 2.102e-91
Identity = 169/200 (84.50%), Postives = 185/200 (92.50%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M TI+ADEISNIIRERI+ Y +++ I+N GTVLQVGDGI RIYGLDEVMAGEL+EFEEGT GIALNLES NVGVVLMGDGL I+EG SVKATG+IAQ+PV +AYLGRVINALA PIDGRGEI +SE RLI+SPAPGI+SRRS+YEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQ QN+ICVYVAIG
Sbjct:    1 MVTIRADEISNIIRERIQHYTKKINILNTGTVLQVGDGIVRIYGLDEVMAGELIEFEEGTKGIALNLESKNVGVVLMGDGLRIKEGGSVKATGRIAQVPVGDAYLGRVINALATPIDGRGEILSSEFRLIDSPAPGILSRRSIYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQSQNIICVYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_PHYPA (ATP synthase subunit alpha, chloroplastic OS=Physcomitrella patens GN=atpA PE=3 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 2.746e-91
Identity = 170/200 (85.00%), Postives = 189/200 (94.50%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M  I+ DEIS+IIR++IE Y++E+K+VN+GTVLQVGDGIARIYGLD+VMAGELVEFE+ +IGIALNLES NVGVVLMGDGL IQEGSSVKATGKIAQIPVS+ YLGRV+NALA+PIDG+G+I ASE RLIES APGIISRRSVYEP+QTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ+GQNVICVYVAIG
Sbjct:    1 MVKIRPDEISSIIRKQIEDYSQEIKVVNVGTVLQVGDGIARIYGLDKVMAGELVEFEDNSIGIALNLESDNVGVVLMGDGLTIQEGSSVKATGKIAQIPVSDGYLGRVVNALAQPIDGKGQIPASEFRLIESSAPGIISRRSVYEPMQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQKGQNVICVYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_CHLAT (ATP synthase subunit alpha, chloroplastic OS=Chlorokybus atmophyticus GN=atpA PE=3 SV=2)

HSP 1 Score: 334.724 bits (857), Expect = 3.586e-91
Identity = 168/200 (84.00%), Postives = 189/200 (94.50%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M  I+ +EIS++IR++IEQYN+EVK+VNIGTVLQVGDGIARIYGL +VMAGEL+EFE+GTIGIALNLES NVG V+MG+GL IQEGSSVKATGKIAQIPV EAY+GRV+NALA+PIDG+GEI  SE RL+ESPAPGIISRRSVYEPLQTGL+AID+MIPIGRGQRELIIGDRQTGKTAVATDTILNQ+GQNVICVYVAIG
Sbjct:    1 MIKIQPEEISSVIRKQIEQYNQEVKVVNIGTVLQVGDGIARIYGLAKVMAGELLEFEDGTIGIALNLESNNVGAVMMGEGLTIQEGSSVKATGKIAQIPVGEAYVGRVVNALARPIDGKGEIPTSEYRLLESPAPGIISRRSVYEPLQTGLVAIDAMIPIGRGQRELIIGDRQTGKTAVATDTILNQKGQNVICVYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_CUSGR (ATP synthase subunit alpha, plastid OS=Cuscuta gronovii GN=atpA PE=3 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 4.684e-91
Identity = 169/200 (84.50%), Postives = 185/200 (92.50%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M TI+ADEISNIIRERI+ Y +++ I+N GTVLQVGDGI RIYGLDEVMAGEL+EFEEGT GIALNLES NVGVVLMGDGL I+EG SVKATG+IAQ+PV +AYLGRVINALA PIDGRGEI +SE RLI+SPAPGI+SRRS+YEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQ +NVICVYVAIG
Sbjct:    1 MVTIRADEISNIIRERIQHYTKKINILNTGTVLQVGDGIVRIYGLDEVMAGELIEFEEGTKGIALNLESKNVGVVLMGDGLRIKEGGSVKATGRIAQVPVGDAYLGRVINALATPIDGRGEILSSEFRLIDSPAPGILSRRSIYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQSKNVICVYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_GNEPA (ATP synthase subunit alpha, chloroplastic OS=Gnetum parvifolium GN=atpA PE=3 SV=1)

HSP 1 Score: 333.954 bits (855), Expect = 6.117e-91
Identity = 168/201 (83.58%), Postives = 189/201 (94.03%), Query Frame = 1
Query:  202 LMTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            +M TI+ DEIS+IIRE+IEQYN E+++VN+GTVLQVGDGIARI+GL EVMAGELVEFE+ T+GIALNLE+ NVGVVLMGDGL I+EGS VK TGKIAQIPVS+A+LGR++NALA+PIDGRG I ASE RLIESPAPGI+SRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ+GQNV+CVYVAIG
Sbjct:    1 MMITIRPDEISSIIREQIEQYNNEIQVVNMGTVLQVGDGIARIHGLYEVMAGELVEFEDSTVGIALNLETQNVGVVLMGDGLTIKEGSFVKTTGKIAQIPVSDAFLGRIVNALAQPIDGRGPIPASEFRLIESPAPGIVSRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQKGQNVVCVYVAIG 201          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_WHEAT (ATP synthase subunit alpha, chloroplastic OS=Triticum aestivum GN=atpA PE=3 SV=2)

HSP 1 Score: 332.798 bits (852), Expect = 1.363e-90
Identity = 172/200 (86.00%), Postives = 184/200 (92.00%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M T++ DEI  I+RERIEQYNR+V I NIG V+QVGDGIARI GL E+M+GELVEF EGT GIALNLES NVG+VLMGDGLMIQEGS VKATG+IAQIPVSEAYLGRV+NALAKPIDG+GEI ASESRLIESPAP IISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ+GQ VICVYVAIG
Sbjct:    1 MATLRVDEIHKILRERIEQYNRKVGIENIGRVVQVGDGIARIIGLGEIMSGELVEFAEGTRGIALNLESKNVGIVLMGDGLMIQEGSFVKATGRIAQIPVSEAYLGRVVNALAKPIDGKGEIIASESRLIESPAPSIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQKGQGVICVYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_CHAGL (ATP synthase subunit alpha, chloroplastic OS=Chaetosphaeridium globosum GN=atpA PE=3 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 1.363e-90
Identity = 167/200 (83.50%), Postives = 189/200 (94.50%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M  I+ +EIS+IIR++IEQYN+EV+++NIGTVLQVGDGIARIYGLD+VM+GEL+EFE+GTIGIALNLES NVG VLMG+GL IQEGSSVKATGKIAQIPVS+ YLGRV+NALA+PIDG+G+I ASE RLIES APGIISRRSVYEP+QTGLIAID+MIPIGRGQRELIIGDRQTGKTAVATDTILNQ+G NVICVYVAIG
Sbjct:    1 MVNIRPEEISSIIRKQIEQYNQEVRVINIGTVLQVGDGIARIYGLDKVMSGELLEFEDGTIGIALNLESDNVGAVLMGEGLSIQEGSSVKATGKIAQIPVSDGYLGRVVNALARPIDGKGDIPASEFRLIESAAPGIISRRSVYEPMQTGLIAIDAMIPIGRGQRELIIGDRQTGKTAVATDTILNQKGNNVICVYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_AGRST (ATP synthase subunit alpha, chloroplastic OS=Agrostis stolonifera GN=atpA PE=3 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 1.780e-90
Identity = 173/200 (86.50%), Postives = 184/200 (92.00%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M T++ DEI  I+RERIEQYNR+V I NIG V+QVGDGIARI GL E+M+GELVEF EGT GIALNLES NVG+VLMGDGLMIQEGS VKATG+IAQIPVSEAYLGRVINALAKPIDG+GEI ASESRLIES AP IISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ+GQNVICVYVAIG
Sbjct:    1 MATLRVDEIHKILRERIEQYNRKVGIENIGRVVQVGDGIARIIGLGEIMSGELVEFAEGTRGIALNLESKNVGIVLMGDGLMIQEGSFVKATGRIAQIPVSEAYLGRVINALAKPIDGKGEIIASESRLIESAAPSIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQKGQNVICVYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_HORVU (ATP synthase subunit alpha, chloroplastic OS=Hordeum vulgare GN=atpA PE=3 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 3.036e-90
Identity = 171/200 (85.50%), Postives = 184/200 (92.00%), Query Frame = 1
Query:  205 MTTIKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            M T++ DEI  I+RERIEQYNR+V I NIG V+QVGDGIARI GL E+M+GELV+F EGT GIALNLES NVG+VLMGDGLMIQEGS VKATG+IAQIPVSEAYLGRV+NALAKPIDG+GEI ASESRLIESPAP IISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ+GQ VICVYVAIG
Sbjct:    1 MATLRVDEIHKILRERIEQYNRKVGIENIGRVVQVGDGIARIIGLGEIMSGELVQFAEGTRGIALNLESKNVGIVLMGDGLMIQEGSFVKATGRIAQIPVSEAYLGRVVNALAKPIDGKGEIIASESRLIESPAPSIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQKGQGVICVYVAIG 200          
BLAST of CX069529 vs. ExPASy Swiss-Prot
Match: ATPA_CHAVU (ATP synthase subunit alpha, chloroplastic OS=Chara vulgaris GN=atpA PE=3 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 1.154e-89
Identity = 166/197 (84.26%), Postives = 187/197 (94.92%), Query Frame = 1
Query:  214 IKADEISNIIRERIEQYNREVKIVNIGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESTNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG 804
            I+  EIS+IIR++IE+Y++EVKIVNIGTVLQVGDGIARIYGLD+VMAGEL+EFE+ T+GIALNLES NVG VLMG+GL IQEGSSVKATGKIAQIPV ++YLGRV+NALA+PIDG+G+I  SESRLIESPAPGIISRRSVYEP+QTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA DTILNQ+GQ+VICVYVAIG
Sbjct:    7 IRPAEISSIIRKKIEEYDQEVKIVNIGTVLQVGDGIARIYGLDQVMAGELLEFEDNTVGIALNLESDNVGAVLMGEGLTIQEGSSVKATGKIAQIPVGDSYLGRVVNALARPIDGKGDIDTSESRLIESPAPGIISRRSVYEPMQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVAVDTILNQKGQDVICVYVAIG 203          
The following BLAST results are available for this feature:
BLAST of CX069529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_CUSOB2.102e-9184.50ATP synthase subunit alpha, plastid OS=Cuscuta obt... [more]
ATPA_PHYPA2.746e-9185.00ATP synthase subunit alpha, chloroplastic OS=Physc... [more]
ATPA_CHLAT3.586e-9184.00ATP synthase subunit alpha, chloroplastic OS=Chlor... [more]
ATPA_CUSGR4.684e-9184.50ATP synthase subunit alpha, plastid OS=Cuscuta gro... [more]
ATPA_GNEPA6.117e-9183.58ATP synthase subunit alpha, chloroplastic OS=Gnetu... [more]
ATPA_WHEAT1.363e-9086.00ATP synthase subunit alpha, chloroplastic OS=Triti... [more]
ATPA_CHAGL1.363e-9083.50ATP synthase subunit alpha, chloroplastic OS=Chaet... [more]
ATPA_AGRST1.780e-9086.50ATP synthase subunit alpha, chloroplastic OS=Agros... [more]
ATPA_HORVU3.036e-9085.50ATP synthase subunit alpha, chloroplastic OS=Horde... [more]
ATPA_CHAVU1.154e-8984.26ATP synthase subunit alpha, chloroplastic OS=Chara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11A09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11A09-B17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069529 ID=CX069529; Name=CX069529; organism=Citrus sinensis; type=EST; length=804bp
GTCCGACAACGGGTTTTCCAACAAGCTTTACAAGGAGCGCTCGGAACTCT
GAATAGTTGTTTGAACAAGGAGTTACATTTACGTACCATTAGTGCCAATA
TTGGCATGTTTGGAGCGATGAAAGAAATAACTGATTAGTCCTTTTACTGT
AGGCACATTATTTTTTTTTTTTTTTTTAAGAAAAAAAAGAATTAAGAAAT
ACTTATGACAACAATTAAAGCCGACGAAATTAGTAATATTATCCGCGAAC
GTATTGAGCAATATAATAGAGAAGTAAAGATTGTAAATATTGGGACCGTA
CTTCAAGTAGGCGACGGCATCGCCCGTATTTATGGTCTTGATGAAGTAAT
GGCAGGTGAATTAGTAGAATTTGAAGAGGGTACAATAGGCATTGCTCTGA
ATTTGGAATCAACTAATGTTGGTGTTGTTTTAATGGGTGACGGTTTAATG
ATACAAGAAGGAAGTTCTGTAAAAGCAACCGGAAAAATTGCTCAGATACC
AGTAAGCGAGGCTTATTTAGGTCGTGTTATAAATGCCCTGGCTAAACCTA
TTGATGGTCGAGGTGAAATTTCAGCTTCTGAATCTCGATTAATTGAATCC
CCTGCTCCGGGTATTATTTCGAGACGTTCCGTATATGAGCCTCTTCAAAC
AGGACTTATTGCTATTGATTCGATGATCCCTATCGGACGCGGTCAGCGAG
AATTAATTATTGGGGACAGACAGACCGGTAAAACGGCAGTAGCCACGGAT
ACGATTCTCAACCAACAAGGGCAAAATGTAATATGTGTTTATGTAGCTAT
TGGT
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