CX069526

Overview
NameCX069526
Unique NameCX069526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_ARATH (Superoxide dismutase [Cu-Zn] OS=Arabidopsis thaliana GN=SODCC PE=1 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 2.431e-59
Identity = 118/184 (64.13%), Postives = 127/184 (69.02%), Query Frame = -2 
Query:  197 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 748
            M K VAVL  +EGV GT+ F QEGDG+                                TTVSG++SGLKPG HGFHVHALGDTTNGCMSTGPHFNP GK HGAPED NRHA           GTATFT+ D QIPL+GPNSI+GRAVVVHADPDDLGKGGHELS +TGNAGGRVACGIIGLQG
Sbjct:    1 MAKGVAVLNSSEGVTGTIFFTQEGDGV--------------------------------TTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSLATGNAGGRVACGIIGLQG 152
[Close]
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_CARPA (Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=SODCC PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 5.415e-59
Identity = 116/184 (63.04%), Postives = 129/184 (70.11%), Query Frame = -2 
Query:  197 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 748
            MVKAVAVL  +EGV GT+ F Q  DG                                PTTV+G +SGLKPG HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDD RHA           G  +F+++D+QIPL+GPNSI+GRAVVVHADPDDLGKGGHELSK+TGNAGGRVACG+IGLQG
Sbjct:    1 MVKAVAVLSSSEGVSGTIFFTQAADG--------------------------------PTTVTGEISGLKPGHHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDIRHAGDLGNVNVGDDGKVSFSIIDSQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGVIGLQG 152
[Close]
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_NICPL (Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia GN=SODCC PE=2 SV=2)

HSP 1 Score: 227.639 bits (579), Expect = 7.072e-59
Identity = 118/184 (64.13%), Postives = 130/184 (70.65%), Query Frame = -2 
Query:  197 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 748
            MVKAVAVL  +EGV GT+ F Q+GD                                 PTTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPH+NPAGKEHGAPED+ RHA           GTA+FT+ D QIPL+GP SIIGRAVVVHADPDDLGKGGHELSK+TGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLSSSEGVSGTIFFTQDGDA--------------------------------PTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTLTDKQIPLAGPQSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152
[Close]
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_SOLCS (Superoxide dismutase [Cu-Zn] OS=Solidago canadensis var. scabra GN=SODCC PE=2 SV=3)

HSP 1 Score: 226.483 bits (576), Expect = 1.576e-58
Identity = 117/184 (63.59%), Postives = 129/184 (70.11%), Query Frame = -2 
Query:  197 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 748
            MVKAVAVL  +EGV GT+ F+QE +G                                PTTV+G LSGLKPGPHGFHVHALGDTTNGCMSTGPH+NP GK+HGAP+D++RHA           GTA FT+VD QIPL G  SIIGRAVVVHADPDDLGKGGHELSK+TGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLSSSEGVSGTIFFSQEAEGA-------------------------------PTTVTGDLSGLKPGPHGFHVHALGDTTNGCMSTGPHYNPHGKDHGAPDDEHRHAGDLGNVTVGEDGTAKFTIVDKQIPLIGAQSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 153
[Close]
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC2_SOLLC (Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopersicum GN=SODCC.5 PE=3 SV=3)

HSP 1 Score: 226.483 bits (576), Expect = 1.576e-58
Identity = 117/184 (63.59%), Postives = 129/184 (70.11%), Query Frame = -2 
Query:  197 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 748
            MVKAVAVL  +EGV GT+ F Q+G                                  PTTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPH+NPAGKEHGAPED+ RHA           GTA+FT+ D QIPL+GP SIIGRAVVVHADPDDLGKGGHELSKSTGNAGGR+ACGIIGLQG
Sbjct:    1 MVKAVAVLNSSEGVSGTILFTQDGAA--------------------------------PTTVNGNISGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTITDKQIPLTGPQSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRIACGIIGLQG 152
[Close]
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_CAPAN (Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN=SODCC PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 2.058e-58
Identity = 116/184 (63.04%), Postives = 130/184 (70.65%), Query Frame = -2 
Query:  197 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 748
            MVKAVAVL  +E V GT+ F+Q+GD                                 PTTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPH+NPAGKEHGAPED+NRHA           GTA+FT+ D QIPL+GP SIIGR VVVHADPDDLGKGGHEL+K+TGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLSSSECVSGTILFSQDGDA--------------------------------PTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDENRHAGDLGNITVGEDGTASFTITDEQIPLTGPQSIIGRGVVVHADPDDLGKGGHELTKTTGNAGGRVACGIIGLQG 152
[Close]
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC2_ORYSJ (Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa subsp. japonica GN=SODCC2 PE=1 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 2.058e-58
Identity = 118/184 (64.13%), Postives = 130/184 (70.65%), Query Frame = -2 
Query:  197 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 748
            MVKAVAVL  +EGVKGT+ F+QEGDG                                PT+V+GS+SGLKPG HGFHVHALGDTTNGCMSTGPHFNP GKEHGAP+D+NRHA           G A   V D+QIPL+G +SIIGRAVVVHADPDDLGKGGHELSK+TGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLASSEGVKGTIFFSQEGDG--------------------------------PTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152
[Close]
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC2_MAIZE (Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 2.058e-58
Identity = 119/184 (64.67%), Postives = 130/184 (70.65%), Query Frame = -2 
Query:  197 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 748
            MVKAVAVL GT+ VKGT+ F+QEGDG                                PTTV+GS+SGLKPG HGFHVHALGDTTNGCMSTGPHFNP GKEHGAPED++RHA           G     + D+QIPL+GP+SIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLAGTD-VKGTIFFSQEGDG--------------------------------PTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTGPHFNPVGKEHGAPEDEDRHAGDLGNVTAGEDGVVNVNITDSQIPLAGPHSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 151
[Close]
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_BRAOC (Superoxide dismutase [Cu-Zn] OS=Brassica oleracea var. capitata GN=SODCC PE=1 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 3.510e-58
Identity = 115/184 (62.50%), Postives = 126/184 (68.48%), Query Frame = -2 
Query:  197 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 748
            M K VAVL  +EGVKGT+ F  EG+G                                 TTV+G++SGL+PG HGFHVHALGD TNGCMSTGPHFNP GK HGAPED NRHA           GTATFT+ D+QIPLSGPNSI+GRA+VVHADPDDLGKGGHELS STGNAGGRVACGIIGLQG
Sbjct:    1 MAKGVAVLNSSEGVKGTIFFTHEGNGA--------------------------------TTVTGTVSGLRPGLHGFHVHALGDNTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGNIIVGDDGTATFTITDSQIPLSGPNSIVGRAIVVHADPDDLGKGGHELSLSTGNAGGRVACGIIGLQG 152
[Close]
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC1_BRAJU (Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea GN=SODCC1 PE=2 SV=3)

HSP 1 Score: 223.787 bits (569), Expect = 1.021e-57
Identity = 115/184 (62.50%), Postives = 126/184 (68.48%), Query Frame = -2 
Query:  197 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 748
            M K V VL  +EGVKGT+ F QEG+G                                 TTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPHFNP GK HGAPED NRHA           GTATFT+ D+QIPL GPNSI+GRAVVVHA+PDDLGKGGHELS +TGNAGGRVACGIIGLQG
Sbjct:    1 MGKGVRVLNSSEGVKGTIFFTQEGNGT--------------------------------TTVTGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPEGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDSQIPLDGPNSIVGRAVVVHAEPDDLGKGGHELSLTTGNAGGRVACGIIGLQG 152
The following BLAST results are available for this feature:
BLAST of CX069526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC_ARATH2.431e-5964.13Superoxide dismutase [Cu-Zn] OS=Arabidopsis thalia... [more]
SODC_CARPA5.415e-5963.04Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=S... [more]
SODC_NICPL7.072e-5964.13Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbagi... [more]
SODC_SOLCS1.576e-5863.59Superoxide dismutase [Cu-Zn] OS=Solidago canadensi... [more]
SODC2_SOLLC1.576e-5863.59Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopers... [more]
SODC_CAPAN2.058e-5863.04Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN... [more]
SODC2_ORYSJ2.058e-5864.13Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa sub... [more]
SODC2_MAIZE2.058e-5864.67Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODC... [more]
SODC_BRAOC3.510e-5862.50Superoxide dismutase [Cu-Zn] OS=Brassica oleracea ... [more]
SODC1_BRAJU1.021e-5762.50Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11A08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11A08-B15-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069526 ID=CX069526; Name=CX069526; organism=Citrus sinensis; type=EST; length=878bp
TTTTTTTTTTTTTTTTTAAATGAAAATGTAAAGATGGAGATTATAAGAAA
ACCATCCAAGATACACAACAAAGTTATAGATTTCTCTTATTCAAGATCAT
AGTCTTGAAAAGTCACACTCAAGCATATATGGACTATAATGCACTCAAAA
CATCATATCAAATGAATTTATTATTGTCCGATGAGATAAGGCTTCACCCT
TGGAGGCCAATGATGCCGCAAGCTACTCTGCCACCAGCATTTCCAGTGCT
TTTGCTCAGCTCATGACCGCCCTTGCCAAGATCATCGGGATCTGCGTGGA
CTACAACAGCCCTTCCAATAATGGAATTTGGTCCAGAAAGTGGAATCTGA
TTGTCAACAACTGTAAAAGTAGCAGTACCATCATCACCAACATTGACATT
TCCTAAATCACCAGCATGACGATTATCATCCTCTGGAGCTCCATGTTCTT
TTCCAGCAGGGTTAAAGTGGGGTCCAGTAGACATGCAACCATTTGTTGTG
TCTCCAAGAGCATGAACATGGAATCCATGAGGACCAGGCTTGAGACCAGA
GAGGCTTCCTGATACAGTTGTTGGACCTGGAAGGGGGAAAAAAGGCCCCA
AAAAAATTACTTTAGACATGATTTAAGAACAACTAGTTTCAGAATCGACT
AACTAATTACTGAATAAAATACCATCTCCTTCCTGGGCAAAGGAAACAGT
TCCCTTGACACCCTCAGTTCCACCAAGAACTGCAACTGCTTTCACCATTG
TGCTGTGTGATCTGAGCAGCACAAAATATCACATTTAGTGAACCATCAGA
GTATAAAAATCACAAACTTCCAACTACTATAGAAACAACGCCAGCAGAAC
AAAAAACAAAATAAAAACCGTTGCCGGA
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