CX069526

Overview
NameCX069526
Unique NameCX069526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_DROYA (Superoxide dismutase [Cu-Zn] OS=Drosophila yakuba GN=Sod PE=3 SV=3)

HSP 1 Score: 165.236 bits (417), Expect = 4.311e-40
Identity = 91/182 (50.00%), Postives = 104/182 (57.14%), Query Frame = -2 
Query:  203 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 748
            +VKAV V+ G    KGTV F QE            SET                       VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHGAP D+NRH                 ++ D++I L G +SIIGR VVVHAD DDLGKGGHELSKSTGNAG R+ CG+IG+
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQES-----------SETPVK--------------------VSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSKITLFGADSIIGRTVVVHADADDLGKGGHELSKSTGNAGARIGCGVIGI 150
[Close]
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_DROOR (Superoxide dismutase [Cu-Zn] OS=Drosophila orena GN=Sod PE=3 SV=3)

HSP 1 Score: 165.236 bits (417), Expect = 4.311e-40
Identity = 91/182 (50.00%), Postives = 104/182 (57.14%), Query Frame = -2 
Query:  203 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 748
            +VKAV V+ G    KGTV F QE            SET                       VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHGAP D+NRH                 ++ D++I L G +SIIGR VVVHAD DDLGKGGHELSKSTGNAG R+ CG+IG+
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQES-----------SETPVK--------------------VSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSRITLFGADSIIGRTVVVHADADDLGKGGHELSKSTGNAGARIGCGVIGI 150
[Close]
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_DROSI (Superoxide dismutase [Cu-Zn] OS=Drosophila simulans GN=Sod PE=3 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 9.603e-40
Identity = 89/182 (48.90%), Postives = 102/182 (56.04%), Query Frame = -2 
Query:  203 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 748
            +VKAV V+ G    KGTV F QE  G                                P  VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHGAP D+NRH                  + D++I L G +SIIGR VVVHAD DDLG+GGHELSKSTGNAG R+ CG+IG+
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQESSGT-------------------------------PVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITDSKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGI 150
[Close]
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_DROSE (Superoxide dismutase [Cu-Zn] OS=Drosophila sechellia GN=Sod PE=3 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 9.603e-40
Identity = 89/182 (48.90%), Postives = 102/182 (56.04%), Query Frame = -2 
Query:  203 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 748
            +VKAV V+ G    KGTV F QE  G                                P  VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHGAP D+NRH                  + D++I L G +SIIGR VVVHAD DDLG+GGHELSKSTGNAG R+ CG+IG+
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQESSGT-------------------------------PVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITDSKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGI 150
[Close]
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_DROME (Superoxide dismutase [Cu-Zn] OS=Drosophila melanogaster GN=Sod PE=1 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 9.603e-40
Identity = 89/182 (48.90%), Postives = 102/182 (56.04%), Query Frame = -2 
Query:  203 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 748
            +VKAV V+ G    KGTV F QE  G                                P  VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHGAP D+NRH                  + D++I L G +SIIGR VVVHAD DDLG+GGHELSKSTGNAG R+ CG+IG+
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQESSGT-------------------------------PVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITDSKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGI 150
[Close]
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_DROMA (Superoxide dismutase [Cu-Zn] OS=Drosophila mauritiana GN=Sod PE=3 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 9.603e-40
Identity = 89/182 (48.90%), Postives = 102/182 (56.04%), Query Frame = -2 
Query:  203 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 748
            +VKAV V+ G    KGTV F QE  G                                P  VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHGAP D+NRH                  + D++I L G +SIIGR VVVHAD DDLG+GGHELSKSTGNAG R+ CG+IG+
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQESSGT-------------------------------PVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITDSKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGI 150
[Close]
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_DROBS (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila busckii GN=Sod PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 9.603e-40
Identity = 76/121 (62.81%), Postives = 87/121 (71.90%), Query Frame = -2 
Query:  203 VSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 565
            V+G ++GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHGAP D+NRH            G     + D +I L G NSIIGR VVVHADPDDLGKGGHELSK+TGNAG R+ CG+IG+
Sbjct:   22 VTGEVTGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPQGKEHGAPTDENRHLGDLGNITATGDGPTAVDICDCKITLFGANSIIGRTVVVHADPDDLGKGGHELSKTTGNAGARIGCGVIGI 142
[Close]
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_DROTE (Superoxide dismutase [Cu-Zn] OS=Drosophila teissieri GN=Sod PE=3 SV=3)

HSP 1 Score: 163.696 bits (413), Expect = 1.254e-39
Identity = 90/182 (49.45%), Postives = 104/182 (57.14%), Query Frame = -2 
Query:  203 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 748
            +VKAV V+ G    KGTV F QE            SET                       VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHGAP D+NRH                 ++ D++I L G +SIIGR VVVHAD DDLG+GGHELSKSTGNAG R+ CG+IG+
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQES-----------SETPVK--------------------VSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGI 150
[Close]
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_CHYAM (Superoxide dismutase [Cu-Zn] OS=Chymomyza amoena GN=Sod PE=3 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 1.254e-39
Identity = 75/121 (61.98%), Postives = 86/121 (71.07%), Query Frame = -2 
Query:  203 VSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 565
            V G ++GL  G HGFHVH  GD TNGCMS+GPHFNP  KEHGAP D+NRH            G     + D++I L G NSI+GR VVVHADPDDLGKGGHELSKSTGNAG R+ CG+IG+
Sbjct:   30 VCGEITGLNKGQHGFHVHEFGDNTNGCMSSGPHFNPLNKEHGAPTDENRHLGDLGNIEAPGDGPTKVCINDSKITLFGENSIVGRTVVVHADPDDLGKGGHELSKSTGNAGARIGCGVIGI 150
[Close]
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_DROER (Superoxide dismutase [Cu-Zn] OS=Drosophila erecta GN=Sod PE=3 SV=3)

HSP 1 Score: 161.77 bits (408), Expect = 4.766e-39
Identity = 90/182 (49.45%), Postives = 103/182 (56.59%), Query Frame = -2 
Query:  203 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 748
            +VKAV V+ G    KGTV F QE            SET                       VSG + GL    HGFHVH  GD TNGCMS+GPHFNP GKEHGAP D+NRH                 ++ D++I L G +SIIGR VVVHAD DDLGKGGHELSKSTGNAG R+ CG+IG+
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQES-----------SETPVK--------------------VSGEVCGLAKCLHGFHVHEFGDNTNGCMSSGPHFNPHGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSKITLFGADSIIGRTVVVHADADDLGKGGHELSKSTGNAGARIGCGVIGI 150
The following BLAST results are available for this feature:
BLAST of CX069526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC_DROYA4.311e-4050.00Superoxide dismutase [Cu-Zn] OS=Drosophila yakuba ... [more]
SODC_DROOR4.311e-4050.00Superoxide dismutase [Cu-Zn] OS=Drosophila orena G... [more]
SODC_DROSI9.603e-4048.90Superoxide dismutase [Cu-Zn] OS=Drosophila simulan... [more]
SODC_DROSE9.603e-4048.90Superoxide dismutase [Cu-Zn] OS=Drosophila sechell... [more]
SODC_DROME9.603e-4048.90Superoxide dismutase [Cu-Zn] OS=Drosophila melanog... [more]
SODC_DROMA9.603e-4048.90Superoxide dismutase [Cu-Zn] OS=Drosophila mauriti... [more]
SODC_DROBS9.603e-4062.81Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_DROTE1.254e-3949.45Superoxide dismutase [Cu-Zn] OS=Drosophila teissie... [more]
SODC_CHYAM1.254e-3961.98Superoxide dismutase [Cu-Zn] OS=Chymomyza amoena G... [more]
SODC_DROER4.766e-3949.45Superoxide dismutase [Cu-Zn] OS=Drosophila erecta ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11A08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11A08-B15-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069526 ID=CX069526; Name=CX069526; organism=Citrus sinensis; type=EST; length=878bp
TTTTTTTTTTTTTTTTTAAATGAAAATGTAAAGATGGAGATTATAAGAAA
ACCATCCAAGATACACAACAAAGTTATAGATTTCTCTTATTCAAGATCAT
AGTCTTGAAAAGTCACACTCAAGCATATATGGACTATAATGCACTCAAAA
CATCATATCAAATGAATTTATTATTGTCCGATGAGATAAGGCTTCACCCT
TGGAGGCCAATGATGCCGCAAGCTACTCTGCCACCAGCATTTCCAGTGCT
TTTGCTCAGCTCATGACCGCCCTTGCCAAGATCATCGGGATCTGCGTGGA
CTACAACAGCCCTTCCAATAATGGAATTTGGTCCAGAAAGTGGAATCTGA
TTGTCAACAACTGTAAAAGTAGCAGTACCATCATCACCAACATTGACATT
TCCTAAATCACCAGCATGACGATTATCATCCTCTGGAGCTCCATGTTCTT
TTCCAGCAGGGTTAAAGTGGGGTCCAGTAGACATGCAACCATTTGTTGTG
TCTCCAAGAGCATGAACATGGAATCCATGAGGACCAGGCTTGAGACCAGA
GAGGCTTCCTGATACAGTTGTTGGACCTGGAAGGGGGAAAAAAGGCCCCA
AAAAAATTACTTTAGACATGATTTAAGAACAACTAGTTTCAGAATCGACT
AACTAATTACTGAATAAAATACCATCTCCTTCCTGGGCAAAGGAAACAGT
TCCCTTGACACCCTCAGTTCCACCAAGAACTGCAACTGCTTTCACCATTG
TGCTGTGTGATCTGAGCAGCACAAAATATCACATTTAGTGAACCATCAGA
GTATAAAAATCACAAACTTCCAACTACTATAGAAACAACGCCAGCAGAAC
AAAAAACAAAATAAAAACCGTTGCCGGA
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