CX069526

Overview
NameCX069526
Unique NameCX069526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_SCHMA (Superoxide dismutase [Cu-Zn] OS=Schistosoma mansoni GN=SOD PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 8.129e-39
Identity = 87/181 (48.07%), Postives = 99/181 (54.70%), Query Frame = -2
Query:  203 VKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 745
            +KAV V+ GT GVKG V F QE D                                 P  V    SGLK G HGFHVH  GDTTNGC S G HFNP  +EHGAPED  RH            G A +   D  I L+G +SIIGR +V+H + DDLG+GGHELSK TGNAGGR+ACG+IGL
Sbjct:    1 MKAVCVMTGTAGVKGVVKFTQETDN-------------------------------GPVHVHAEFSGLKAGKHGFHVHEFGDTTNGCTSAGAHFNPTKQEHGAPEDSIRHVGDLGNVVAGADGNAVYNATDKLISLNGSHSIIGRTMVIHENEDDLGRGGHELSKVTGNAGGRLACGVIGL 150          
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_DROPS (Superoxide dismutase [Cu-Zn] OS=Drosophila pseudoobscura pseudoobscura GN=Sod PE=3 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 1.062e-38
Identity = 88/182 (48.35%), Postives = 102/182 (56.04%), Query Frame = -2
Query:  203 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 748
            MVKAV V+ G    KGTV F QE            SE                        V+G + GL  G HGFHVH  GD TNGCMS+GPHFNP  KEHGAP D+NRH                 ++ D++I L G +SIIGR VVVHAD DDLGKGGHELSK+TGNAG R+ CG+IG+
Sbjct:    1 MVKAVCVINGD--AKGTVFFEQE-----------TSEAPVK--------------------VTGEVLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHADADDLGKGGHELSKTTGNAGARIGCGVIGI 149          
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_ASPJA (Superoxide dismutase [Cu-Zn] (Fragment) OS=Aspergillus japonicus GN=sodC PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.811e-38
Identity = 76/111 (68.47%), Postives = 85/111 (76.58%), Query Frame = -2
Query:  197 HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 529
            HGFHVHALGDTTNGCMSTGPHFNP GKEHGAP+D+NRHA           G A   V D+QIPL+G +SIIGRAVVVHADPDDLGKGGHELSK+TGN+   +     G+QG
Sbjct:    8 HGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNSNSSMDSCAHGIQG 118          
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_PRIGL (Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN=sod1 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.988e-38
Identity = 85/181 (46.96%), Postives = 99/181 (54.70%), Query Frame = -2
Query:  203 VKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 745
            +KAV VL GT  V GTV F Q  DG                                P T+ GS++GL PG HGFHVHA GD TNGC+S GPH+NP  K HG P+D+ RH            G A F + D Q+ LSG  SIIGR +VVH   DDLGKGG E S  TGNAG R+ACG+IG+
Sbjct:    1 MKAVCVLKGTGEVTGTVLFEQAADG--------------------------------PVTLKGSITGLTPGKHGFHVHAFGDNTNGCISAGPHYNPFSKNHGGPDDEERHVGDLGNVEANGNGVAEFEIKDRQLHLSGERSIIGRTLVVHEKEDDLGKGGDEESLRTGNAGSRLACGVIGI 149          
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_HALRO (Superoxide dismutase [Cu-Zn] OS=Halocynthia roretzi PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 8.988e-38
Identity = 88/181 (48.62%), Postives = 107/181 (59.12%), Query Frame = -2
Query:  203 VKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 745
            +KAV VL G+  VKGT++F Q+  G            SC                    TV+G +SGL PG HGFH+H  GD TNGC S+G HFNP  + HGAPEDD RH            G AT  + D  I L+G +SIIGRAVVVHA  DDLGKGGHE SK+TG+AGGR++CG+IG+
Sbjct:    3 IKAVCVLVGS--VKGTLNFKQDAIG------------SC--------------------TVTGEVSGLIPGKHGFHIHEYGDLTNGCTSSGGHFNPFKQIHGAPEDDIRHVGDLGNITADSSGVATVNITDRMISLTGEHSIIGRAVVVHAGEDDLGKGGHEDSKTTGHAGGRLSCGVIGI 149          
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_CERCA (Superoxide dismutase [Cu-Zn] OS=Ceratitis capitata GN=Sod PE=3 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 4.461e-37
Identity = 85/182 (46.70%), Postives = 101/182 (55.49%), Query Frame = -2
Query:  203 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 748
            +VKAV V+ G   VKGTV F Q+           D+++                       V+G ++GL  G HGFHVH  GD TNGC S GPHFNP G  HGAP D NRH            G     + D  I L G NSI+GR +VVHADPDDLGKGGHELSK+TGNAG R+ CG+IG+
Sbjct:    2 VVKAVCVINGD--VKGTVHFEQQ-----------DAKSP--------------------VLVTGEVNGLAKGLHGFHVHEFGDNTNGCTSAGPHFNPYGNSHGAPSDLNRHLGDLGNIEASGDGATKVEISDKLITLFGENSIVGRTIVVHADPDDLGKGGHELSKTTGNAGARLGCGVIGI 150          
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC2_XENLA (Superoxide dismutase [Cu-Zn] B OS=Xenopus laevis GN=sod1-B PE=1 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 3.776e-36
Identity = 82/181 (45.30%), Postives = 96/181 (53.04%), Query Frame = -2
Query:  206 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIG 748
            MVKAV VL G+  VKG V F Q+ +G +                                +V G + GL  G HGFH+H  GD TNGCMS G HFNP  K HGAP D +RH              A F + D+ I L GPNSIIGR  VVH   DDLGKGG++ S  TGNAGGR+ACG+IG
Sbjct:    1 MVKAVCVLAGSGDVKGVVHFEQQDEGAV--------------------------------SVEGKIEGLTDGLHGFHIHVFGDNTNGCMSAGSHFNPENKNHGAPGDTDRHVGDLGNVTAEGG-VAQFKITDSLISLKGPNSIIGRTAVVHEKADDLGKGGNDESLKTGNAGGRLACGVIG 148          
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_DANRE (Superoxide dismutase [Cu-Zn] OS=Danio rerio GN=sod1 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.413e-36
Identity = 83/180 (46.11%), Postives = 97/180 (53.89%), Query Frame = -2
Query:  203 KAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 742
            KAV VL GT  V GTV F QEG+                                 P  V+G ++GL PG HGFHVHA GD TNGC+S GPHFNP  K HG P D  RH            G A   + D  + LSG +SIIGR +V+H   DDLGKGG+E S  TGNAGGR+ACG+IG+
Sbjct:    4 KAVCVLKGTGEVTGTVYFNQEGE-------------------------------KKPVKVTGEITGLTPGKHGFHVHAFGDNTNGCISAGPHFNPHDKTHGGPTDSVRHVGDLGNVTADASGVAKIEIEDAMLTLSGQHSIIGRTMVIHEKEDDLGKGGNEESLKTGNAGGRLACGVIGI 152          
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_BOMMO (Superoxide dismutase [Cu-Zn] OS=Bombyx mori PE=1 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 1.099e-35
Identity = 72/122 (59.02%), Postives = 82/122 (67.21%), Query Frame = -2
Query:  203 VSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTAT-FTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 565
            VSG + GL  G HGFHVH  GD TNGC S G HFNP  ++HG P    RH               T  ++ D+QI L GPNSIIGR +VVHADPDDLG GGHELSK+TGNAGGR+ACG+IGL
Sbjct:   30 VSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGL 151          
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC1_XENLA (Superoxide dismutase [Cu-Zn] A OS=Xenopus laevis GN=sod1-A PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 1.099e-35
Identity = 83/181 (45.86%), Postives = 94/181 (51.93%), Query Frame = -2
Query:  206 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIG 748
            MVKAV VL G+  VKG V F Q+ DG                                  TV G + GL  G HGFH+H  GD TNGC+S GPHFNP  K HG+P+D +RH            G A F   D QI L G  SIIGR  VVH   DDLGKGG + S  TGNAGGR+ACG+IG
Sbjct:    1 MVKAVCVLAGSGDVKGVVRFEQQDDG--------------------------------DVTVEGKIEGLTDGNHGFHIHVFGDNTNGCLSAGPHFNPQNKNHGSPKDADRHV-GDLGNVTAEGGVAQFKFTDPQISLKGERSIIGRTAVVHEKQDDLGKGGDDESLKTGNAGGRLACGVIG 148          
The following BLAST results are available for this feature:
BLAST of CX069526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC_SCHMA8.129e-3948.07Superoxide dismutase [Cu-Zn] OS=Schistosoma manson... [more]
SODC_DROPS1.062e-3848.35Superoxide dismutase [Cu-Zn] OS=Drosophila pseudoo... [more]
SODC_ASPJA1.811e-3868.47Superoxide dismutase [Cu-Zn] (Fragment) OS=Aspergi... [more]
SODC_PRIGL8.988e-3846.96Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN... [more]
SODC_HALRO8.988e-3848.62Superoxide dismutase [Cu-Zn] OS=Halocynthia roretz... [more]
SODC_CERCA4.461e-3746.70Superoxide dismutase [Cu-Zn] OS=Ceratitis capitata... [more]
SODC2_XENLA3.776e-3645.30Superoxide dismutase [Cu-Zn] B OS=Xenopus laevis G... [more]
SODC_DANRE8.413e-3646.11Superoxide dismutase [Cu-Zn] OS=Danio rerio GN=sod... [more]
SODC_BOMMO1.099e-3559.02Superoxide dismutase [Cu-Zn] OS=Bombyx mori PE=1 S... [more]
SODC1_XENLA1.099e-3545.86Superoxide dismutase [Cu-Zn] A OS=Xenopus laevis G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_11A08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11A08-B15-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069526 ID=CX069526; Name=CX069526; organism=Citrus sinensis; type=EST; length=878bp
TTTTTTTTTTTTTTTTTAAATGAAAATGTAAAGATGGAGATTATAAGAAA
ACCATCCAAGATACACAACAAAGTTATAGATTTCTCTTATTCAAGATCAT
AGTCTTGAAAAGTCACACTCAAGCATATATGGACTATAATGCACTCAAAA
CATCATATCAAATGAATTTATTATTGTCCGATGAGATAAGGCTTCACCCT
TGGAGGCCAATGATGCCGCAAGCTACTCTGCCACCAGCATTTCCAGTGCT
TTTGCTCAGCTCATGACCGCCCTTGCCAAGATCATCGGGATCTGCGTGGA
CTACAACAGCCCTTCCAATAATGGAATTTGGTCCAGAAAGTGGAATCTGA
TTGTCAACAACTGTAAAAGTAGCAGTACCATCATCACCAACATTGACATT
TCCTAAATCACCAGCATGACGATTATCATCCTCTGGAGCTCCATGTTCTT
TTCCAGCAGGGTTAAAGTGGGGTCCAGTAGACATGCAACCATTTGTTGTG
TCTCCAAGAGCATGAACATGGAATCCATGAGGACCAGGCTTGAGACCAGA
GAGGCTTCCTGATACAGTTGTTGGACCTGGAAGGGGGAAAAAAGGCCCCA
AAAAAATTACTTTAGACATGATTTAAGAACAACTAGTTTCAGAATCGACT
AACTAATTACTGAATAAAATACCATCTCCTTCCTGGGCAAAGGAAACAGT
TCCCTTGACACCCTCAGTTCCACCAAGAACTGCAACTGCTTTCACCATTG
TGCTGTGTGATCTGAGCAGCACAAAATATCACATTTAGTGAACCATCAGA
GTATAAAAATCACAAACTTCCAACTACTATAGAAACAACGCCAGCAGAAC
AAAAAACAAAATAAAAACCGTTGCCGGA
back to top