CX069526

Overview
NameCX069526
Unique NameCX069526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_MACFA (Superoxide dismutase [Cu-Zn] OS=Macaca fascicularis GN=SOD1 PE=2 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 6.029e-34
Identity = 81/182 (44.51%), Postives = 100/182 (54.95%), Query Frame = -2
Query:  203 VKAVAVLGGTEGVKGTVSFAQ-EGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 745
            +KAV VL G   V+GT++F Q E +G                                P  V GS++GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+D+ RH            G A  +  D+ I LSG +SIIGR +VVH   DDLGKGG+E SK TGNAGGR+ACG+IG+
Sbjct:    3 MKAVCVLKGDSPVQGTINFEQKESNG--------------------------------PVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGI 152          
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_CAPHI (Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 6.029e-34
Identity = 78/180 (43.33%), Postives = 96/180 (53.33%), Query Frame = -2
Query:  203 KAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 742
            KAV VL G   V+GT+ F  +GD ++                                 V+GS++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+D+ RH            G A   +VD  I LSG  SIIGR +VVH  PDDLG+GG+E S  TGNAG  +ACG+IG+
Sbjct:    4 KAVCVLKGDGPVQGTIHFEAKGDKVV---------------------------------VTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVKADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSCLACGVIGI 150          
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_CEREL (Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 7.874e-34
Identity = 77/180 (42.78%), Postives = 97/180 (53.89%), Query Frame = -2
Query:  203 KAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 742
            KAV VL G   V+GT+ F  +G  ++                                 V+GS++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+D+ RH            G A   +VD+ I LSG +SIIGR +VVH  PDDLG+GG+E S  TGNA  R+ACG+IG+
Sbjct:    4 KAVCVLKGDGPVQGTIRFEAKGHTVV---------------------------------VTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAKVDIVDSLISLSGEHSIIGRTMVVHEKPDDLGRGGNEESTKTGNARNRLACGVIGI 150          
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_PIG (Superoxide dismutase [Cu-Zn] OS=Sus scrofa GN=SOD1 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 1.028e-33
Identity = 77/180 (42.78%), Postives = 96/180 (53.33%), Query Frame = -2
Query:  203 KAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 742
            KAV VL G   V+GT+ F  +G+  +                                 V+G++ GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+D  RH            G AT  + D+ I LSG +SIIGR +VVH  PDDLG+GG+E S  TGNAG R+ACG+IG+
Sbjct:    4 KAVCVLKGDGPVQGTIYFELKGEKTVL--------------------------------VTGTIKGLAEGDHGFHVHQFGDNTQGCTSAGPHFNPESKKHGGPKDQERHVGDLGNVTAGKDGVATVYIEDSVIALSGDHSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 151          
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_CANAL (Superoxide dismutase [Cu-Zn] OS=Candida albicans GN=SOD1 PE=3 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 1.028e-33
Identity = 84/183 (45.90%), Postives = 97/183 (53.01%), Query Frame = -2
Query:  203 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 748
            MVKAVAV+ G   V+GTV F QE +                                 PTT+S  + G  P    GFH+H  GD TNGC S GPHFNP GK+HGAPEDD RH            G A  T  D  I L G +SI+GR +VVHA  DD GKGG E SK+TG+AG R ACG+IGL
Sbjct:    1 MVKAVAVVRGDSKVQGTVHFEQESESA-------------------------------PTTISWEIEGNDPNALRGFHIHQFGDNTNGCTSAGPHFNPFGKQHGAPEDDERHVGDLGNISTDGNGVAKGTKQDLLIKLIGKDSILGRTIVVHAGTDDYGKGGFEDSKTTGHAGARPACGVIGL 152          
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_PAETN (Superoxide dismutase [Cu-Zn] OS=Paecilomyces tenuipes GN=SOD1 PE=3 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 1.343e-33
Identity = 83/183 (45.36%), Postives = 98/183 (53.55%), Query Frame = -2
Query:  203 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 748
            MVKAV VL G   V GTV+F QE +                                 PTT++  L+G  P    GFH+H  GD TNGC S GPHFNP GK HGAP D  RH            G A  ++ D+Q+ L GP+S+IGR VVVHA  DDLGKGG+E S  TGNAG R ACG+IG+
Sbjct:    1 MVKAVCVLRGDAKVGGTVTFEQESESA-------------------------------PTTITYDLTGNDPNAERGFHIHTFGDNTNGCTSAGPHFNPHGKTHGAPTDAARHVGDLGNVKTDAQGNAKGSIQDSQVKLIGPHSVIGRTVVVHAGTDDLGKGGNEESLKTGNAGPRPACGVIGV 152          
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_CANGA (Superoxide dismutase [Cu-Zn] OS=Candida glabrata GN=SOD1 PE=3 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 1.343e-33
Identity = 80/183 (43.72%), Postives = 99/183 (54.10%), Query Frame = -2
Query:  203 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 748
            MVKAVAVL G+ GV G V+  Q  +                                 PTT++  ++G  P    GFH+H  GD TNGC+S GPHFNP  K HGAP+D+NRH            G A   + D+ + L GP S++GR+VVVHA  DDLGKGG+E S  TGNAG R ACG+IGL
Sbjct:    1 MVKAVAVLRGSAGVSGVVTLEQASE-------------------------------QDPTTITYEIAGNDPNAERGFHIHEFGDVTNGCVSAGPHFNPFKKTHGAPQDENRHVGDLGNIKTDAQGVAKGVITDSLVKLIGPTSVVGRSVVVHAGTDDLGKGGNEESLKTGNAGPRPACGVIGL 152          
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_MOUSE (Superoxide dismutase [Cu-Zn] OS=Mus musculus GN=Sod1 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.754e-33
Identity = 78/181 (43.09%), Postives = 95/181 (52.49%), Query Frame = -2
Query:  203 VKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 745
            +KAV VL G   V+GT+ F Q+  G                                P  +SG ++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P D+ RH            G A  ++ D  I LSG +SIIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:    3 MKAVCVLKGDGPVQGTIHFEQKASG-------------------------------EPVVLSGQITGLTEGQHGFHVHQYGDNTQGCTSAGPHFNPHSKKHGGPADEERHVGDLGNVTAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC5_DICDI (Superoxide dismutase [Cu-Zn] 5 OS=Dictyostelium discoideum GN=sodE PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.291e-33
Identity = 67/121 (55.37%), Postives = 79/121 (65.29%), Query Frame = -2
Query:  203 VSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 565
            +SG +SGLK G HGFHVH  GDTTNGC+S G HFNP  KEHG+P D+NRH              +   + DN I L G NSIIGR++VVH   DDLG+G  + SK TGNAG R+ CGII L
Sbjct:   29 ISGVISGLKEGKHGFHVHEFGDTTNGCLSAGAHFNPFKKEHGSPNDENRHVGDLGNIESNKDKKSIINITDNIITLFGQNSIIGRSIVVHDKEDDLGRGNSQDSKITGNAGSRLGCGIIAL 149          
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_CRYGA (Superoxide dismutase [Cu-Zn] OS=Cryptococcus gattii GN=SOD1 PE=2 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 2.992e-33
Identity = 81/183 (44.26%), Postives = 92/183 (50.27%), Query Frame = -2
Query:  203 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 748
            MVKAVAVL G   V G ++F QE +G                                P TVSG +  L      GFHVH  GD TNGC S GPHFNP GK HGAP D  RH            G A+  + D  + L GP SIIGR +VVHA  DD GKGG+  S  TGNAG R ACG+IG+
Sbjct:    1 MVKAVAVLKGDSPVTGVITFTQEKEGA-------------------------------PVTVSGDIKNLDANAERGFHVHEFGDNTNGCTSAGPHFNPHGKNHGAPSDSERHVGDLGNVKTDGNGVASVNISDKSLSLFGPYSIIGRTIVVHAGTDDFGKGGNAESLKTGNAGARAACGVIGI 152          
The following BLAST results are available for this feature:
BLAST of CX069526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC_MACFA6.029e-3444.51Superoxide dismutase [Cu-Zn] OS=Macaca fasciculari... [more]
SODC_CAPHI6.029e-3443.33Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SO... [more]
SODC_CEREL7.874e-3442.78Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=... [more]
SODC_PIG1.028e-3342.78Superoxide dismutase [Cu-Zn] OS=Sus scrofa GN=SOD1... [more]
SODC_CANAL1.028e-3345.90Superoxide dismutase [Cu-Zn] OS=Candida albicans G... [more]
SODC_PAETN1.343e-3345.36Superoxide dismutase [Cu-Zn] OS=Paecilomyces tenui... [more]
SODC_CANGA1.343e-3343.72Superoxide dismutase [Cu-Zn] OS=Candida glabrata G... [more]
SODC_MOUSE1.754e-3343.09Superoxide dismutase [Cu-Zn] OS=Mus musculus GN=So... [more]
SODC5_DICDI2.291e-3355.37Superoxide dismutase [Cu-Zn] 5 OS=Dictyostelium di... [more]
SODC_CRYGA2.992e-3344.26Superoxide dismutase [Cu-Zn] OS=Cryptococcus gatti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11A08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11A08-B15-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069526 ID=CX069526; Name=CX069526; organism=Citrus sinensis; type=EST; length=878bp
TTTTTTTTTTTTTTTTTAAATGAAAATGTAAAGATGGAGATTATAAGAAA
ACCATCCAAGATACACAACAAAGTTATAGATTTCTCTTATTCAAGATCAT
AGTCTTGAAAAGTCACACTCAAGCATATATGGACTATAATGCACTCAAAA
CATCATATCAAATGAATTTATTATTGTCCGATGAGATAAGGCTTCACCCT
TGGAGGCCAATGATGCCGCAAGCTACTCTGCCACCAGCATTTCCAGTGCT
TTTGCTCAGCTCATGACCGCCCTTGCCAAGATCATCGGGATCTGCGTGGA
CTACAACAGCCCTTCCAATAATGGAATTTGGTCCAGAAAGTGGAATCTGA
TTGTCAACAACTGTAAAAGTAGCAGTACCATCATCACCAACATTGACATT
TCCTAAATCACCAGCATGACGATTATCATCCTCTGGAGCTCCATGTTCTT
TTCCAGCAGGGTTAAAGTGGGGTCCAGTAGACATGCAACCATTTGTTGTG
TCTCCAAGAGCATGAACATGGAATCCATGAGGACCAGGCTTGAGACCAGA
GAGGCTTCCTGATACAGTTGTTGGACCTGGAAGGGGGAAAAAAGGCCCCA
AAAAAATTACTTTAGACATGATTTAAGAACAACTAGTTTCAGAATCGACT
AACTAATTACTGAATAAAATACCATCTCCTTCCTGGGCAAAGGAAACAGT
TCCCTTGACACCCTCAGTTCCACCAAGAACTGCAACTGCTTTCACCATTG
TGCTGTGTGATCTGAGCAGCACAAAATATCACATTTAGTGAACCATCAGA
GTATAAAAATCACAAACTTCCAACTACTATAGAAACAACGCCAGCAGAAC
AAAAAACAAAATAAAAACCGTTGCCGGA
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