CX069516

Overview
NameCX069516
Unique NameCX069516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069516 vs. ExPASy Swiss-Prot
Match: VTC1A_DANRE (V-type proton ATPase subunit C 1-A OS=Danio rerio GN=atp6v1c1a PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.543e-11
Identity = 32/85 (37.65%), Postives = 54/85 (63.53%), Query Frame = 3 
Query:   33 EEEGWEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANST 287
            ++E   +L  D++     L++W   ++ E F +W+H  A+RVF ES+LRYGLP +F A +L P+ K  KK+R +L +L  + +S+
Sbjct:  261 DKEEMTRLSTDKKKQFGPLVRWLKVNFSEAFIAWVHIKALRVFVESVLRYGLPVNFQAMLLQPNKKNMKKLREVLYDLYKHLDSS 345
[Close]
BLAST of CX069516 vs. ExPASy Swiss-Prot
Match: VATC1_XENLA (V-type proton ATPase subunit C 1 OS=Xenopus laevis GN=atp6v1c1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.543e-11
Identity = 32/85 (37.65%), Postives = 54/85 (63.53%), Query Frame = 3 
Query:   33 EEEGWEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANST 287
            ++E   +L  D++     L++W   ++ E F +W+H  A+RVF ES+LRYGLP +F A +L P+ K  KK+R +L +L  + +S+
Sbjct:  261 DKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHVKALRVFVESVLRYGLPVNFQAMLLQPNKKTMKKLREVLNDLYKHLDSS 345
[Close]
BLAST of CX069516 vs. ExPASy Swiss-Prot
Match: VATC_CAEBR (V-type proton ATPase subunit C OS=Caenorhabditis briggsae GN=vha-11 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.933e-11
Identity = 30/73 (41.10%), Postives = 52/73 (71.23%), Query Frame = 3 
Query:   48 EKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEEL 266
            +KL+ +++   + L++W   ++GE+FS+++H  A+RVF ES+LRYGLP +F A V+ P+    KK+R  L++L
Sbjct:  269 DKLLAEKQKQYAPLIRWLKINFGEIFSAYIHIKALRVFVESVLRYGLPVNFQAAVIEPAKGQSKKLRQELQKL 341
[Close]
BLAST of CX069516 vs. ExPASy Swiss-Prot
Match: VATC1_XENTR (V-type proton ATPase subunit C 1 OS=Xenopus tropicalis GN=atp6v1c1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11
Identity = 32/85 (37.65%), Postives = 54/85 (63.53%), Query Frame = 3 
Query:   33 EEEGWEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANST 287
            ++E   +L  D++     L++W   ++ E F +W+H  A+RVF ES+LRYGLP +F A +L P+ K  KK+R +L +L  + +S+
Sbjct:  261 DKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHVKALRVFVESVLRYGLPVNFQAMLLQPNKKTMKKLREVLYDLYKHLDSS 345
The following BLAST results are available for this feature:
BLAST of CX069516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
VTC1A_DANRE4.543e-1137.65V-type proton ATPase subunit C 1-A OS=Danio rerio ... [more]
VATC1_XENLA4.543e-1137.65V-type proton ATPase subunit C 1 OS=Xenopus laevis... [more]
VATC_CAEBR5.933e-1141.10V-type proton ATPase subunit C OS=Caenorhabditis b... [more]
VATC1_XENTR7.749e-1137.65V-type proton ATPase subunit C 1 OS=Xenopus tropic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11A02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11A02-B3-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069516 ID=CX069516; Name=CX069516; organism=Citrus sinensis; type=EST; length=784bp
CTTGGGGAAGCTTATCTCAGAAAAAGACGTGAGAAGAAGAAGGCTGGGAA
AAATTAGTTCACGACCAAGAAAGCTTGAGAAGCTCTCTTTTGCAATGGTG
CTATACCAGTTACGGCGAGGTTTTTAGTTCCTGGATGCATTTTTGTGCTG
TACGTGTCTTTGCAGAGAGCATTTTGAGATATGGTTTGCCGCCATCTTTC
TTGGCATGTGTTTTAGCTCCCTCCGTGAAGGGTGAAAAAAAAGTGCGTTC
AATTCTTGAAGAACTGTGCGGCAATGCGAACAGCACATTCTGGAAATCCG
AAGATGATGGCGGAATGATGGCGGGTTTGGGAGGGGATGCTGATTCTCAT
CCTTATGTGTCGTTCACAATCAATCTTGTTTGATTGATGCTGAGTCCCCC
GGTTCCATGTCCGGTAGAATTCAGTCTCAAGTATTCCTCTGGACTAAAAT
AAATAATGGGCTGGAGTTGAAGATATGTATATTAGGATCAATAACTCAAT
TCTTTTGTTGTTTACTTATGATCTCAGCTTGGATAGTTCTGGTCAGTCTC
ATGGAGGAAGCTTGTGGAGAAGATCTTGCCATCTGAAATTTGTATTTTAA
GTTATTATTTATGAGGTTTTATTTTCTGTATCTATTATGTTTCAATTTTC
ATGCTCTTCTTGAACATTAAATTTGTTGTCCTACAATGATCAACAAGTAT
TGATGCAGTTTTGTGATGTTTGTTATTATAGTGTATTTACTTATTGGGAA
TGGGAATGGAAATTAAGGAATGAGATTAAATCCT
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