CX069501

Overview
NameCX069501
Unique NameCX069501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069501_ssr48 microsatellite CX069501_ssr48:48..59. BLAST: Citrus ESTs to TAIR9
Csv1_Contig6370 contig Csv1_Contig6370:119..990. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_AETGR (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Aethionema grandiflora GN=ndhG PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 2.100e-63
Identity = 122/159 (76.73%), Postives = 132/159 (83.02%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHDF                 LFTNPI+SAFSLG VLVCISL YILSNSHFVAAAQLLIYVGA+ VLIIFAVMFMN S+YS D  LN WT+GDG+TSL+CT+I FSLI+TILDTSWYG+IWTTR NQI+EQDLISNSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGLLFGSIGVVLFTNPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAITVLIIFAVMFMNDSEYSTD--LNRWTVGDGITSLICTTILFSLISTILDTSWYGVIWTTRLNQILEQDLISNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_ACOCL (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Acorus calamus GN=ndhG PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 2.100e-63
Identity = 125/159 (78.62%), Postives = 131/159 (82.39%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                  L TNPIYSAFSLGLVLVCISLFYILSNS+FVAAAQLLIYVGAVNVLIIFAVMFMNGSDYS DF L  WT+GDG+TSLVCTSI FSLITTILDTSWYGIIW T +NQI+EQDL SN QQIGIHLSTDF+LPFE
Sbjct:    1 MDLPGPIHDVLLVFLGSGLILGGLGVVLLTNPIYSAFSLGLVLVCISLFYILSNSYFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSNDFYL--WTVGDGVTSLVCTSILFSLITTILDTSWYGIIWNTGSNQIVEQDLTSNVQQIGIHLSTDFYLPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_ACOAM (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Acorus americanus GN=ndhG PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 2.100e-63
Identity = 125/159 (78.62%), Postives = 131/159 (82.39%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                  L TNPIYSAFSLGLVLVCISLFYILSNS+FVAAAQLLIYVGAVNVLIIFAVMFMNGSDYS DF L  WT+GDG+TSLVCTSI FSLITTILDTSWYGIIW T +NQI+EQDL SN QQIGIHLSTDF+LPFE
Sbjct:    1 MDLPGPIHDVLLVFLGSGLILGGLGVVLLTNPIYSAFSLGLVLVCISLFYILSNSYFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSNDFYL--WTVGDGVTSLVCTSILFSLITTILDTSWYGIIWNTGSNQIVEQDLTSNVQQIGIHLSTDFYLPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_RANMC (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Ranunculus macranthus GN=ndhG PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 3.583e-63
Identity = 123/159 (77.36%), Postives = 132/159 (83.02%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHDF                 L TNPI+SAFSLGLVLVC SLFY  SNSHFVAAAQLLIYVGA+NVLIIFAVMFMNGS+Y  DF  +LWT+GDG+TSLVCTSIF SLITTI DTSWYGI+WTTR+NQIIEQDLI+NSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGLGFIMGGLGVVLLTNPIFSAFSLGLVLVCTSLFYTPSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYSDF--HLWTVGDGVTSLVCTSIFVSLITTIPDTSWYGIVWTTRSNQIIEQDLINNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_MORIN (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Morus indica GN=ndhG PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 4.679e-63
Identity = 124/159 (77.99%), Postives = 131/159 (82.39%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHDF                 L TNPIYSAFSLGLVLVCISL YILSNS+FVAAAQLLIYVGA+NVLIIFAVMFMNGS+Y KDF  NLWT+G+G T L+CTSIF  LITTI DTSWYGIIWTTR+NQIIE DLISNSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGLGLILGGIGVVLLTNPIYSAFSLGLVLVCISLLYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDF--NLWTVGNGFTLLICTSIFGLLITTITDTSWYGIIWTTRSNQIIEHDLISNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_POPTR (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Populus trichocarpa GN=ndhG PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 6.111e-63
Identity = 121/159 (76.10%), Postives = 133/159 (83.65%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            M+LPGPIHDF                 L TNPI+SAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGA+NVLI+FAVMFMNGS+Y KDF  NLWT+G+GLTSL+CTS+F  LIT I +T+WYGIIWTTRANQIIEQDL+SN QQIGIHLSTDFFLPFE
Sbjct:    1 MNLPGPIHDFLLVFLGLGLILGGLGVVLLTNPIFSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLILFAVMFMNGSEYYKDF--NLWTVGNGLTSLICTSLFVLLITIISNTTWYGIIWTTRANQIIEQDLVSNGQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_POPAL (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Populus alba GN=ndhG PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 6.111e-63
Identity = 121/159 (76.10%), Postives = 133/159 (83.65%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            M+LPGPIHDF                 L TNPI+SAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGA+NVLI+FAVMFMNGS+Y KDF  NLWT+G+GLTSL+CTS+F  LIT I +T+WYGIIWTTRANQIIEQDL+SN QQIGIHLSTDFFLPFE
Sbjct:    1 MNLPGPIHDFLLVFLGLGLILGGLGVVLLTNPIFSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLILFAVMFMNGSEYYKDF--NLWTVGNGLTSLICTSLFVLLITIISNTTWYGIIWTTRANQIIEQDLVSNGQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_BUXMI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Buxus microphylla GN=ndhG PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 6.111e-63
Identity = 123/159 (77.36%), Postives = 132/159 (83.02%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHDF                 L TNPI+SAFSLGLVL CISLF+I SNSHFVAAAQLLIYVGA+NVLIIFAVMF NGS+Y  DF  ++WT+GDG+TSLVCTSIF SLITTILDTSWYGIIWTTR+NQIIEQDLISN QQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGIILGGLGVVLLTNPIFSAFSLGLVLFCISLFHIPSNSHFVAAAQLLIYVGAINVLIIFAVMFTNGSEYYNDF--HVWTVGDGVTSLVCTSIFVSLITTILDTSWYGIIWTTRSNQIIEQDLISNGQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_LIRTU (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Liriodendron tulipifera GN=ndhG PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.361e-62
Identity = 124/159 (77.99%), Postives = 132/159 (83.02%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                  L TNPIYSAFSLGLVLVCISLF+I SNS+FVAAAQLLIYVGAVNVLI+FAVMFMNGS+YSKD  L LWT+GDG+TSLVCTSI FSLITTI DTSWYGIIWTTR+NQIIEQDL SN QQIGIHLSTDF+LPFE
Sbjct:    1 MDLPGPIHDILLVFLGSGLILGGLGVVLLTNPIYSAFSLGLVLVCISLFHIPSNSYFVAAAQLLIYVGAVNVLIVFAVMFMNGSEYSKD--LYLWTVGDGVTSLVCTSILFSLITTISDTSWYGIIWTTRSNQIIEQDLTSNVQQIGIHLSTDFYLPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_DRIGR (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Drimys granadensis GN=ndhG PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.361e-62
Identity = 124/159 (77.99%), Postives = 132/159 (83.02%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                  LFTNPI+SAFSLGLVLVCISLF+ILSNS+FVAAAQLLIYVGAVNVLIIFAVMFMNGS+Y  DF L  WT+GDG+TSLVCTSI FSLITTI DTSWYGIIWTT +NQIIEQDLISN QQIGIHLSTDF+LPFE
Sbjct:    1 MDLPGPIHDILLVFLGSGLILGGLGVVLFTNPIFSAFSLGLVLVCISLFHILSNSYFVAAAQLLIYVGAVNVLIIFAVMFMNGSEYYNDFYL--WTVGDGVTSLVCTSILFSLITTISDTSWYGIIWTTGSNQIIEQDLISNVQQIGIHLSTDFYLPFE 157
The following BLAST results are available for this feature:
BLAST of CX069501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
NU6C_AETGR2.100e-6376.73NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_ACOCL2.100e-6378.62NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_ACOAM2.100e-6378.62NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_RANMC3.583e-6377.36NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_MORIN4.679e-6377.99NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_POPTR6.111e-6376.10NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_POPAL6.111e-6376.10NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_BUXMI6.111e-6377.36NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_LIRTU1.361e-6277.99NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_DRIGR1.361e-6277.99NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10H04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10H04-O8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069501 ID=CX069501; Name=CX069501; organism=Citrus sinensis; type=EST; length=872bp
CATCATTAACCAACTCCGTACCAATTTCGATTCATTTCAATCTGAACAAT
AATAATAATGCAAGTGATTTGGTTGCTTAGAATATACCAGGTACGGAACA
AAAGAATCCATTTGGTAATAGATCGAATAAAAAAAATTCTATTTTGATTT
TCTATTGATCTGTGAATAGTATTCAACTAGACTTTACAAGAATTTAAGGG
AAATGAATGTGATAACACATAATGAATGTGATAACACATAAAAAGTCGAA
TTGGGATTGCTGTTCCTAGTTATAAAGATTTGTTATTGACGCGCCACGGC
AATTGCACCTATTAAAGCAACTAAAAGAATTATTGAAACGAGTTCAAATG
GAAGAAAAAAGTCTGTTGATAAATGAATTCCAATTTGTTGACTATTACTT
ATCAAATCTTGTTCAATAATCTGGTTGGCTCGTGTAGTCCAAATAATCCC
GTACCACGATGTATCGAGAATAGTAGTGATTAGCGAAAAAAAAATACTTG
TACAAACCAGAGAAGTAAGACCATCGCCAATAGTCCAAAGATTCAACTGA
AAATCTTTGGAATAGTCTGAGCCGTTCATGAACATTACAGCAAATATGAT
TAAAACATTTACAGCTCCCACGTAAATAAGGAGTTGCGCGGCAGCTACAA
AATGGGAATTTGATAGAATATAGAATAATGATATACAAACAAGAACCAAT
CCCAAGGAAAAGGCAGAATAAATTGGGTTGGTAAATAATACCACTCCCAG
ACCTCCTAATATAAGACCCGATCCCAGAANAACTAAAATAAAATCGTGTA
TTGGTCCAGGCAAATCCATTATATTAAAATAGGAGATAAATAAATCGAAA
TCTTTTTCATGACCTTATTGAG
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