CX069501

Overview
NameCX069501
Unique NameCX069501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_PELHO (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Pelargonium hortorum GN=ndhG PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 8.824e-62
Identity = 118/159 (74.21%), Postives = 132/159 (83.02%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHDF                 L TNPIYSAFSLG V +CISLFYILSNS+FVAAAQLLIYVGA+NVLI+FAVMFMNGS+Y KDF  +LWT+GDGLTSL+CT +F SLITTILDTSWYGI+WTT++NQIIE+D ISNSQQ+GI LSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGIILGGLGVVLLTNPIYSAFSLGFVFICISLFYILSNSYFVAAAQLLIYVGAINVLILFAVMFMNGSEYYKDF--HLWTLGDGLTSLICTILFLSLITTILDTSWYGILWTTKSNQIIEKDFISNSQQLGILLSTDFFLPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_CAPBU (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Capsella bursa-pastoris GN=ndhG PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 8.824e-62
Identity = 119/159 (74.84%), Postives = 131/159 (82.39%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHDF                 L  NPI+SAFSLG VLVCISL YILSNSHFVAAAQLLIYVGA+NVLIIFAVMFMN S+YS DF  NLWT+G+G+TSLVCT+I F L++TILDTSWYG+IWTT+ NQI+EQDLISNSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGLLVGGLGVVLLPNPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNDSEYSTDF--NLWTVGNGITSLVCTTILFLLMSTILDTSWYGVIWTTKLNQILEQDLISNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_ARAHI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Arabis hirsuta GN=ndhG PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 8.824e-62
Identity = 119/159 (74.84%), Postives = 130/159 (81.76%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHDF                 L  NPI+SAFSLG VLVCISL YIL+NSHFVAAAQLLIYVGA+NVLIIFAVMFMN S+Y  DF  NLWT+GDG+TSLVCT++ FSLI+TILDTSWYG+IWTTR NQI+EQDLISNSQQIG HLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGLIVGGLGVVLLPNPIFSAFSLGFVLVCISLLYILANSHFVAAAQLLIYVGAINVLIIFAVMFMNDSEYFTDF--NLWTVGDGITSLVCTTLLFSLISTILDTSWYGVIWTTRLNQILEQDLISNSQQIGSHLSTDFFLPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_TOBAC (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Nicotiana tabacum GN=ndhG PE=3 SV=2)

HSP 1 Score: 236.498 bits (602), Expect = 1.505e-61
Identity = 121/159 (76.10%), Postives = 130/159 (81.76%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDL  PIHDF                 L  NPIYSAFSLGLVLVC SLFYILSNS+FVAAAQLLIYVGA+NVLIIFAVMFMNGS+Y KDF  +LWT+GDG+TS+VC S+F SLITTI DTSWYGIIWTTR+NQIIEQD ISNSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLSEPIHDFLLVFLGSGLILGGLGVVLLPNPIYSAFSLGLVLVCTSLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDF--HLWTVGDGITSMVCISLFISLITTISDTSWYGIIWTTRSNQIIEQDFISNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_SPIOL (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Spinacia oleracea GN=ndhG PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.505e-61
Identity = 118/159 (74.21%), Postives = 134/159 (84.28%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHDF                 LFTNPI+SAFSLGLVLVCISLFYIL+NSHFVA+AQLLIYVGA+NVLIIF+VMFM+G +Y K FQL  WT+GDG+TSLVC S+F SLI+TIL+TSWYGIIWTT++NQI+EQDLI+ SQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGLILGALGVVLFTNPIFSAFSLGLVLVCISLFYILANSHFVASAQLLIYVGAINVLIIFSVMFMSGPEYDKKFQL--WTVGDGVTSLVCISLFVSLISTILNTSWYGIIWTTKSNQILEQDLINASQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_NICTO (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Nicotiana tomentosiformis GN=ndhG PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.505e-61
Identity = 121/159 (76.10%), Postives = 130/159 (81.76%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDL  PIHDF                 L  NPIYSAFSLGLVLVC SLFYILSNS+FVAAAQLLIYVGA+NVLIIFAVMFMNGS+Y KDF  +LWT+GDG+TS+VC S+F SLITTI DTSWYGIIWTTR+NQIIEQD ISNSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLSEPIHDFLLVFLGSGLILGGLGVVLLPNPIYSAFSLGLVLVCTSLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDF--HLWTVGDGITSMVCISLFISLITTISDTSWYGIIWTTRSNQIIEQDFISNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_NICSY (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Nicotiana sylvestris GN=ndhG PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.505e-61
Identity = 121/159 (76.10%), Postives = 130/159 (81.76%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDL  PIHDF                 L  NPIYSAFSLGLVLVC SLFYILSNS+FVAAAQLLIYVGA+NVLIIFAVMFMNGS+Y KDF  +LWT+GDG+TS+VC S+F SLITTI DTSWYGIIWTTR+NQIIEQD ISNSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLSEPIHDFLLVFLGSGLILGGLGVVLLPNPIYSAFSLGLVLVCTSLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDF--HLWTVGDGITSMVCISLFISLITTISDTSWYGIIWTTRSNQIIEQDFISNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_TRACE (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Trachelium caeruleum GN=ndhG PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.966e-61
Identity = 119/159 (74.84%), Postives = 132/159 (83.02%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHDF                 L  NPIYSAFSLGLVLVCISL YILSNSHF+AAAQLLIYVGA+NVLIIFAVMF+NGS+Y KD  LN WT+GDG+TS+VCTS+F SLITTI DTSWYGIIWTT++NQIIEQDLI+NSQ+IGIHLSTDF +PFE
Sbjct:    1 MDLPGPIHDFILVFLGLVLILGGLAVVLLPNPIYSAFSLGLVLVCISLLYILSNSHFLAAAQLLIYVGAINVLIIFAVMFLNGSEYYKD--LNPWTVGDGVTSVVCTSLFASLITTIPDTSWYGIIWTTKSNQIIEQDLINNSQEIGIHLSTDFLIPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_LEMMI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Lemna minor GN=ndhG PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.966e-61
Identity = 120/159 (75.47%), Postives = 130/159 (81.76%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDL GPIHD                  LFTNPIYSAFSLGLVL+C+SLFYIL NS+FVAAAQLLIYVGA+NVLI+FAVMFM GS+YS D  LNLWT+GDG+TSLVCTSI F LI+TI DTSWYGIIWTT+AN IIEQDLISN QQIGIHLSTDFFLPFE
Sbjct:    1 MDLTGPIHDILVVFLGLVLILGGLGVVLFTNPIYSAFSLGLVLICVSLFYILLNSYFVAAAQLLIYVGAINVLILFAVMFMKGSEYSND--LNLWTVGDGVTSLVCTSILFLLISTISDTSWYGIIWTTKANHIIEQDLISNVQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_ATRBE (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Atropa belladonna GN=ndhG PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.567e-61
Identity = 120/159 (75.47%), Postives = 130/159 (81.76%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDL  PIHDF                 L  NPIYSAFSLGLVLVC SLFYILSNS+FVAAAQLLIYVGA+NVLIIFAVMFMNGS+Y KDF  +LWT+GDG+TS+VC S+F SLITTI DTSWYGIIWTTR+NQIIEQD +SNSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLSEPIHDFLLVFLGSGLILGGLGVVLLPNPIYSAFSLGLVLVCTSLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDF--HLWTVGDGITSMVCISLFISLITTISDTSWYGIIWTTRSNQIIEQDFLSNSQQIGIHLSTDFFLPFE 157
The following BLAST results are available for this feature:
BLAST of CX069501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
NU6C_PELHO8.824e-6274.21NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_CAPBU8.824e-6274.84NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_ARAHI8.824e-6274.84NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_TOBAC1.505e-6176.10NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_SPIOL1.505e-6174.21NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_NICTO1.505e-6176.10NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_NICSY1.505e-6176.10NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_TRACE1.966e-6174.84NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_LEMMI1.966e-6175.47NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_ATRBE2.567e-6175.47NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10H04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10H04-O8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069501 ID=CX069501; Name=CX069501; organism=Citrus sinensis; type=EST; length=872bp
CATCATTAACCAACTCCGTACCAATTTCGATTCATTTCAATCTGAACAAT
AATAATAATGCAAGTGATTTGGTTGCTTAGAATATACCAGGTACGGAACA
AAAGAATCCATTTGGTAATAGATCGAATAAAAAAAATTCTATTTTGATTT
TCTATTGATCTGTGAATAGTATTCAACTAGACTTTACAAGAATTTAAGGG
AAATGAATGTGATAACACATAATGAATGTGATAACACATAAAAAGTCGAA
TTGGGATTGCTGTTCCTAGTTATAAAGATTTGTTATTGACGCGCCACGGC
AATTGCACCTATTAAAGCAACTAAAAGAATTATTGAAACGAGTTCAAATG
GAAGAAAAAAGTCTGTTGATAAATGAATTCCAATTTGTTGACTATTACTT
ATCAAATCTTGTTCAATAATCTGGTTGGCTCGTGTAGTCCAAATAATCCC
GTACCACGATGTATCGAGAATAGTAGTGATTAGCGAAAAAAAAATACTTG
TACAAACCAGAGAAGTAAGACCATCGCCAATAGTCCAAAGATTCAACTGA
AAATCTTTGGAATAGTCTGAGCCGTTCATGAACATTACAGCAAATATGAT
TAAAACATTTACAGCTCCCACGTAAATAAGGAGTTGCGCGGCAGCTACAA
AATGGGAATTTGATAGAATATAGAATAATGATATACAAACAAGAACCAAT
CCCAAGGAAAAGGCAGAATAAATTGGGTTGGTAAATAATACCACTCCCAG
ACCTCCTAATATAAGACCCGATCCCAGAANAACTAAAATAAAATCGTGTA
TTGGTCCAGGCAAATCCATTATATTAAAATAGGAGATAAATAAATCGAAA
TCTTTTTCATGACCTTATTGAG
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