CX069501

Overview
NameCX069501
Unique NameCX069501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_CUCSA (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Cucumis sativus GN=ndhG PE=3 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.664e-60
Identity = 120/159 (75.47%), Postives = 132/159 (83.02%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHDF                 LF N IYSAFSLGLVLV ISLFYIL+N+ FVAAAQLLIYVGA+NVLIIFAVMFM GS+YSKDF  NLWT+G+G+T LVCTSIF SL+TTI+DTSWYGIIWTTR+NQI+EQDLISNSQQIGI+LST FFLPFE
Sbjct:    1 MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDF--NLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQILEQDLISNSQQIGIYLSTYFFLPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_LOTJA (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Lotus japonicus GN=ndhG PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.839e-60
Identity = 118/159 (74.21%), Postives = 129/159 (81.13%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLP  +HDF                 L TNPI+SAFSLGL LVCISL YILSNSHFVAA+QLLIYVGA+NVLIIF VMFMNGS+Y +DF+L  WT+GDG+T +VCTSIF SLITTI DTSWYGIIWTTR+NQIIEQDLIS SQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPKTLHDFLLVFLGSGLILGSLGVVLLTNPIFSAFSLGLTLVCISLLYILSNSHFVAASQLLIYVGAINVLIIFGVMFMNGSEYYQDFRL--WTVGDGMTLMVCTSIFISLITTIPDTSWYGIIWTTRSNQIIEQDLISTSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_CICAR (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Cicer arietinum GN=ndhG PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.839e-60
Identity = 118/159 (74.21%), Postives = 129/159 (81.13%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            M LP  +HDF                 L TNPI+SAFSLGLVLVCISLFYILSNSHFVAA+QLLIYVGA+N+LIIFAVMFMN S+Y +DF  NLWT+GDG+T +VCTSIF SL+TTI DTSWYGIIWTTR NQIIEQDLIS SQQIGIHLSTDFFLPFE
Sbjct:    1 MALPETLHDFLLVFLGSGLILGSLGVVLLTNPIFSAFSLGLVLVCISLFYILSNSHFVAASQLLIYVGAINILIIFAVMFMNSSEYYQDF--NLWTVGDGITLIVCTSIFVSLVTTIPDTSWYGIIWTTRPNQIIEQDLISTSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_NYMAL (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Nymphaea alba GN=ndhG PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.403e-59
Identity = 118/159 (74.21%), Postives = 127/159 (79.87%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLP PIHD                  L TNPIYSAFSLGLVLVCISLFYI SNS+FVAAAQLLIYVGA+NVLI+FAVMFMNGS+Y   F  + WT+GDG TSLVCTSIFFSLI TI +TSWYGIIWTTR+NQIIEQDL SN QQIGIHLSTDF+LPFE
Sbjct:    1 MDLPAPIHDILLVSLGSGLIVGGLGVVLLTNPIYSAFSLGLVLVCISLFYIPSNSYFVAAAQLLIYVGAINVLILFAVMFMNGSEYYNYF--HFWTVGDGFTSLVCTSIFFSLIATIPNTSWYGIIWTTRSNQIIEQDLTSNVQQIGIHLSTDFYLPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_NUPAD (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Nuphar advena GN=ndhG PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 9.132e-59
Identity = 117/159 (73.58%), Postives = 126/159 (79.25%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLP PIHD                  L TNPIYSAFS GLVLVCISLFYI SNS+FVAAAQLLIYVGA+NVLI+FAVMFMNGS+Y   F  + WTIGDG TS+VCTSIFFSLI TI +TSWYGIIWTTR+NQIIEQDL SN QQIGIHLSTDF+LPFE
Sbjct:    1 MDLPAPIHDILLVSLGSGLIVGGLGVVLLTNPIYSAFSSGLVLVCISLFYIPSNSYFVAAAQLLIYVGAINVLILFAVMFMNGSEYYNSF--HFWTIGDGFTSVVCTSIFFSLIATIPNTSWYGIIWTTRSNQIIEQDLTSNVQQIGIHLSTDFYLPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_AMBTC (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Amborella trichopoda GN=ndhG PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.193e-58
Identity = 118/159 (74.21%), Postives = 129/159 (81.13%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDL GPIHD                  L TNPIYSAFS GLVLV ISLF+ILSNS+FVAAAQLLIYVGA+NVLIIFAVMFMNGS+Y  +F  +LWT+GDG++S+VCTSI FSLI TILDTSWYGIIWTTR+NQIIEQDL SN QQIGIHLSTDFFLPFE
Sbjct:    1 MDLLGPIHDILLVSLGSGIILGSLGVVLLTNPIYSAFSSGLVLVRISLFHILSNSYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYNNF--HLWTVGDGISSVVCTSILFSLIATILDTSWYGIIWTTRSNQIIEQDLTSNVQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_PHAVU (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Phaseolus vulgaris GN=ndhG PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 2.034e-58
Identity = 113/159 (71.07%), Postives = 128/159 (80.50%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDL   +HDF                  FTN I+SAFSLGLVLVC+SLFYILSNSHFVAA+QLLIYVGA+NVLIIFAVMFMNGS+Y ++F++  WT+GDG+T +VCTSIF S I TILDTSW+GIIWTTR NQI+EQDLIS SQQIGIHLSTDFFLPFE
Sbjct:    1 MDLSESLHDFILVFLGSGLILGSLGVVFFTNTIFSAFSLGLVLVCVSLFYILSNSHFVAASQLLIYVGAINVLIIFAVMFMNGSEYDQNFRV--WTVGDGITLMVCTSIFISQINTILDTSWHGIIWTTRPNQILEQDLISTSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_WHEAT (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Triticum aestivum GN=ndhG PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.319e-57
Identity = 113/159 (71.07%), Postives = 127/159 (79.87%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIH+                  L TNPIYSAFSLGLVLVCISLFY L NS+FVA AQLLIYVGA+NVLIIFAVMF+NGS++SKD   N WTIGDG TSLVC +I FSL+TTI DTSWYGI+WTTR+NQI+EQ LI+N QQIGIHL+TDF+LPFE
Sbjct:    1 MDLPGPIHEILMLFGGFVLLLGGLGVVLLTNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD--KNYWTIGDGFTSLVCITIVFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIHLATDFYLPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_AGRST (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Agrostis stolonifera GN=ndhG PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.319e-57
Identity = 113/159 (71.07%), Postives = 127/159 (79.87%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIH+                  L TNPIYSAFSLGLVLVCISLFY L NS+FVA AQLLIYVGA+NVLIIFAVMF+NGS++SKD   N WTIGDG TSLVC +I FSL+TTI DTSWYGI+WTTR+NQI+EQ LI+N QQIGIHL+TDF+LPFE
Sbjct:    1 MDLPGPIHEILMLFGGFVLLLGGLGVVLLTNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD--KNYWTIGDGFTSLVCITIVFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIHLATDFYLPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_BRADI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Brachypodium distachyon GN=ndhG PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.722e-57
Identity = 113/159 (71.07%), Postives = 127/159 (79.87%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIH+                  L TNPIYSAFSLGLVLVCISLFY L NS+FVA AQLLIYVGA+NVLIIFAVMF+NGS++SKD   N WTIGDG TSLVC +I FSL+TTI DTSWYGI+WTTR+NQI+EQ LI+N QQIGIHL+TDF+LPFE
Sbjct:    1 MDLPGPIHEILVLFLGFVLLLGGLGVVLLTNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD--KNSWTIGDGFTSLVCITIVFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIHLATDFYLPFE 157
The following BLAST results are available for this feature:
BLAST of CX069501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
NU6C_CUCSA1.664e-6075.47NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_LOTJA2.839e-6074.21NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_CICAR2.839e-6074.21NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_NYMAL2.403e-5974.21NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_NUPAD9.132e-5973.58NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_AMBTC1.193e-5874.21NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_PHAVU2.034e-5871.07NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_WHEAT1.319e-5771.07NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_AGRST1.319e-5771.07NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_BRADI1.722e-5771.07NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10H04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10H04-O8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069501 ID=CX069501; Name=CX069501; organism=Citrus sinensis; type=EST; length=872bp
CATCATTAACCAACTCCGTACCAATTTCGATTCATTTCAATCTGAACAAT
AATAATAATGCAAGTGATTTGGTTGCTTAGAATATACCAGGTACGGAACA
AAAGAATCCATTTGGTAATAGATCGAATAAAAAAAATTCTATTTTGATTT
TCTATTGATCTGTGAATAGTATTCAACTAGACTTTACAAGAATTTAAGGG
AAATGAATGTGATAACACATAATGAATGTGATAACACATAAAAAGTCGAA
TTGGGATTGCTGTTCCTAGTTATAAAGATTTGTTATTGACGCGCCACGGC
AATTGCACCTATTAAAGCAACTAAAAGAATTATTGAAACGAGTTCAAATG
GAAGAAAAAAGTCTGTTGATAAATGAATTCCAATTTGTTGACTATTACTT
ATCAAATCTTGTTCAATAATCTGGTTGGCTCGTGTAGTCCAAATAATCCC
GTACCACGATGTATCGAGAATAGTAGTGATTAGCGAAAAAAAAATACTTG
TACAAACCAGAGAAGTAAGACCATCGCCAATAGTCCAAAGATTCAACTGA
AAATCTTTGGAATAGTCTGAGCCGTTCATGAACATTACAGCAAATATGAT
TAAAACATTTACAGCTCCCACGTAAATAAGGAGTTGCGCGGCAGCTACAA
AATGGGAATTTGATAGAATATAGAATAATGATATACAAACAAGAACCAAT
CCCAAGGAAAAGGCAGAATAAATTGGGTTGGTAAATAATACCACTCCCAG
ACCTCCTAATATAAGACCCGATCCCAGAANAACTAAAATAAAATCGTGTA
TTGGTCCAGGCAAATCCATTATATTAAAATAGGAGATAAATAAATCGAAA
TCTTTTTCATGACCTTATTGAG
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