CX069501

Overview
NameCX069501
Unique NameCX069501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_SACHY (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Saccharum hybrid GN=ndhG PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 3.248e-56
Identity = 111/159 (69.81%), Postives = 126/159 (79.25%), Query Frame = -3
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIH+                  L TNPIYSAFSLGLVLVCISLFY L NS+FVA AQLLIYVGA+NVLIIFAVMF+NGS++SKD   N WTIGDG T L+C +I FSL+TTI DTSWYGI+WTTR+NQI+EQ LI+N QQIGIHL+TDF+LPFE
Sbjct:    1 MDLPGPIHEILVLFGGFVLLLGGLGVVLLTNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD--KNYWTIGDGFTLLLCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIHLATDFYLPFE 157          
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_MAIZE (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Zea mays GN=ndhG PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 3.248e-56
Identity = 111/159 (69.81%), Postives = 126/159 (79.25%), Query Frame = -3
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIH+                  L TNPIYSAFSLGLVLVCISLFY L NS+FVA AQLLIYVGA+NVLIIFAVMF+NGS++SKD   N WTIGDG T L+C +I FSL+TTI DTSWYGI+WTTR+NQI+EQ LI+N QQIGIHL+TDF+LPFE
Sbjct:    1 MDLPGPIHEILVLFGGFGLLLGGLGVVLLTNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD--KNYWTIGDGFTLLLCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIHLATDFYLPFE 157          
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_CYCTA (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Cycas taitungensis GN=ndhG PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.158e-45
Identity = 99/159 (62.26%), Postives = 113/159 (71.07%), Query Frame = -3
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPI D                  L TN IYSA SLG VLVCISL YIL N+ FVAAAQ+LIYVGAVNVLI+FAVM MN   Y     + LWT+GDG+T +VCTS+F SLIT IL+TSW  I  TT++NQI+EQDL +N Q+IG HLSTDFFLPFE
Sbjct:    1 MDLPGPIRDILLVPLELGLILGGLEVVLLTNIIYSALSLGPVLVCISLLYILLNADFVAAAQILIYVGAVNVLIVFAVMLMNNQKYPNF--VPLWTVGDGITLVVCTSLFCSLITIILNTSWSEISMTTKSNQILEQDLTNNVQRIGAHLSTDFFLPFE 157          
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_CRYJA (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Cryptomeria japonica GN=ndhG PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 5.566e-40
Identity = 85/159 (53.46%), Postives = 109/159 (68.55%), Query Frame = -3
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            M+ P  I+D                  L TN IYSA SLGLVL+CIS FYI+ N+ FVA AQ+LIY+GAVN+LI+FAVM MN   Y        WT+GD ++S+VCTS+F SLIT IL+ SW+GI  T +++Q++E+DL +N Q+IG HLSTDFFLPFE
Sbjct:    1 MNRPESIYDLLLAPLTLSLIFGGIGVVLLTNIIYSALSLGLVLICISFFYIILNADFVAVAQILIYIGAVNILILFAVMLMNNPKYPN--YAPPWTVGDSISSIVCTSLFCSLITIILNISWFGISLTQKSDQMLERDLTNNIQRIGAHLSTDFFLPFE 157          
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_HUPLU (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Huperzia lucidula GN=ndhG PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.061e-30
Identity = 70/131 (53.44%), Postives = 85/131 (64.89%), Query Frame = -3
Query:  343 FTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 735
            FTN +YSAF LG V VCIS  YIL N+ FVAA Q+LIYVG +NVLI+FAVM +N   Y +   L  WT+GDG    +CTS F S+I  IL T W  I     +N+I+E+ L  N Q+IG H  TD  LPFE
Sbjct:   32 FTNIVYSAFLLGWVPVCISFLYILLNADFVAAVQILIYVGTINVLIVFAVMLINKPQYFR--FLKYWTVGDGTALALCTSPFLSIIAAILSTPWSKISLIVLSNKIVEEPLTDNVQRIGFHSLTDSPLPFE 160          
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_MARPO (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Marchantia polymorpha GN=ndhG PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.998e-30
Identity = 72/131 (54.96%), Postives = 89/131 (67.94%), Query Frame = -3
Query:  343 TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNS-QQIGIHLSTDFFLPFE 732
            TN +YSA  LG V VCISL Y+L N+ FVAAAQ+LIYVGAVNVLIIFAVM +N   YS  F    WTIGDG+T  +CTSIF  L   I +TSW  I   T+ N +++  ++ N+ + IG  L T+F LPFE
Sbjct:   30 TNIVYSALFLGFVFVCISLLYLLLNADFVAAAQILIYVGAVNVLIIFAVMLINKKQYSNFFV--YWTIGDGITLTLCTSIFLLLNNFISNTSWSKIFLMTKPNLVVKDIILINTVRHIGSELLTEFLLPFE 158          
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_PHYPA (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Physcomitrella patens GN=ndhG PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.907e-30
Identity = 72/161 (44.72%), Postives = 95/161 (59.01%), Query Frame = -3
Query:  343 NIMDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 825
            NI++L GP+ +                  L +N +YSAF LGLV  CISL Y   N+ FVAAAQ+LIYVGAVNVLI+FAVM +N  +  K F   +WT+GD +T  +C + FF L+  IL+TSW  I   T +   +E +   N Q+IG  L T + LPFE
Sbjct:    2 NIIELFGPLQEIIFFILEIGVILGSLGVVLLSNIVYSAFFLGLVFFCISLLYFALNADFVAAAQILIYVGAVNVLIVFAVMLINKPESLKIFP--VWTVGDKITLAICLTSFFLLVNIILNTSWSNITVITESKGFLESNFTQNVQRIGSLLLTQYLLPFE 160          
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_ANTFO (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Anthoceros formosae GN=ndhG PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.163e-29
Identity = 72/130 (55.38%), Postives = 90/130 (69.23%), Query Frame = -3
Query:  343 TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 732
            TN +YSAF LGLV VCIS  Y+L ++ FVA AQ+LIYVGAVN+LI+FAVM +N    S  F L  WT+GD +T ++CTS+FF LI+ IL  SW  I    ++N+I EQ L S+ Q IG  L  DF LPFE
Sbjct:   33 TNIVYSAFLLGLVFVCISFLYLLLDADFVATAQILIYVGAVNILIVFAVMLIN-KPQSLQF-LPSWTVGDTITLILCTSLFFLLISMILSISWSNIFSIAQSNKIGEQVLKSSVQGIGSSLLIDFLLPFE 160          
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_ANGEV (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Angiopteris evecta GN=ndhG PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.057e-27
Identity = 73/160 (45.62%), Postives = 92/160 (57.50%), Query Frame = -3
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQL-NLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            M LP PIH                   L TN +YSA  LGLV +CISL Y++ N+ FVAAAQ+LIYVGAVNVL +FAVM +   D  K+  L +   +GD +T  VCTS+F  L   I D SW  I  T ++ + +EQ L ++ Q IG  L T F LPFE
Sbjct:    1 MILPEPIHKVILVIIELGILLGSLGVVLLTNIVYSALLLGLVFICISLLYLVLNADFVAAAQVLIYVGAVNVLTVFAVMLI---DKPKNITLFSFSNVGDNITLGVCTSLFILLTIMIPDASWSEIYMTKQSTKFVEQGLTTDVQLIGSQLLTKFLLPFE 157          
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_PSINU (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Psilotum nudum GN=ndhG PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.331e-25
Identity = 63/127 (49.61%), Postives = 86/127 (67.72%), Query Frame = -3
Query:  343 IYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 723
            + SAFSLGL  + ISL Y++ N+ FVAAAQ+LIYVGA+NVLI+F+VM +     ++D   +  T G+ +T +VCTS+F  L++ ILDTSW  I    ++ +I E  L SN Q IG  L T+F LPFE
Sbjct:   33 VQSAFSLGLTFISISLLYLVLNADFVAAAQVLIYVGAINVLIVFSVMLIQKPHKNEDLSTSRNT-GNNITLIVCTSLFLFLVSIILDTSWSQIYSIKKSTKIFEPILKSNVQLIGSQLLTEFLLPFE 158          
The following BLAST results are available for this feature:
BLAST of CX069501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
NU6C_SACHY3.248e-5669.81NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_MAIZE3.248e-5669.81NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_CYCTA1.158e-4562.26NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_CRYJA5.566e-4053.46NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_HUPLU3.061e-3053.44NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_MARPO3.998e-3054.96NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_PHYPA8.907e-3044.72NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_ANTFO1.163e-2955.38NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_ANGEV7.057e-2745.63NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_PSINU1.331e-2549.61NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_10H04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10H04-O8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069501 ID=CX069501; Name=CX069501; organism=Citrus sinensis; type=EST; length=872bp
CATCATTAACCAACTCCGTACCAATTTCGATTCATTTCAATCTGAACAAT
AATAATAATGCAAGTGATTTGGTTGCTTAGAATATACCAGGTACGGAACA
AAAGAATCCATTTGGTAATAGATCGAATAAAAAAAATTCTATTTTGATTT
TCTATTGATCTGTGAATAGTATTCAACTAGACTTTACAAGAATTTAAGGG
AAATGAATGTGATAACACATAATGAATGTGATAACACATAAAAAGTCGAA
TTGGGATTGCTGTTCCTAGTTATAAAGATTTGTTATTGACGCGCCACGGC
AATTGCACCTATTAAAGCAACTAAAAGAATTATTGAAACGAGTTCAAATG
GAAGAAAAAAGTCTGTTGATAAATGAATTCCAATTTGTTGACTATTACTT
ATCAAATCTTGTTCAATAATCTGGTTGGCTCGTGTAGTCCAAATAATCCC
GTACCACGATGTATCGAGAATAGTAGTGATTAGCGAAAAAAAAATACTTG
TACAAACCAGAGAAGTAAGACCATCGCCAATAGTCCAAAGATTCAACTGA
AAATCTTTGGAATAGTCTGAGCCGTTCATGAACATTACAGCAAATATGAT
TAAAACATTTACAGCTCCCACGTAAATAAGGAGTTGCGCGGCAGCTACAA
AATGGGAATTTGATAGAATATAGAATAATGATATACAAACAAGAACCAAT
CCCAAGGAAAAGGCAGAATAAATTGGGTTGGTAAATAATACCACTCCCAG
ACCTCCTAATATAAGACCCGATCCCAGAANAACTAAAATAAAATCGTGTA
TTGGTCCAGGCAAATCCATTATATTAAAATAGGAGATAAATAAATCGAAA
TCTTTTTCATGACCTTATTGAG
back to top