CX069470

Overview
NameCX069470
Unique NameCX069470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length808
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_FRATF (50S ribosomal protein L2 OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=rplB PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.056e-34
Identity = 71/148 (47.97%), Postives = 99/148 (66.89%), Query Frame = 2
Query:  365 KIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCK 808
            K M  ++   ++  +G+CMPL  + +GT+IHNIE+ P +G +++R+AGT A+++ +  +++ ++RL SG  + +   CRA IG VSN  H  K L KAG  RW G RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWG P K
Sbjct:  113 KDMSVISGEKVDIAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLVGKD-NAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAGAKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGIPTK 255          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_FRAT1 (50S ribosomal protein L2 OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=rplB PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.056e-34
Identity = 71/148 (47.97%), Postives = 99/148 (66.89%), Query Frame = 2
Query:  365 KIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCK 808
            K M  ++   ++  +G+CMPL  + +GT+IHNIE+ P +G +++R+AGT A+++ +  +++ ++RL SG  + +   CRA IG VSN  H  K L KAG  RW G RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWG P K
Sbjct:  113 KDMSVISGEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLVGKD-NAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAGAKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGIPTK 255          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_FRAP2 (50S ribosomal protein L2 OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=rplB PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.056e-34
Identity = 71/148 (47.97%), Postives = 99/148 (66.89%), Query Frame = 2
Query:  365 KIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCK 808
            K M  ++   ++  +G+CMPL  + +GT+IHNIE+ P +G +++R+AGT A+++ +  +++ ++RL SG  + +   CRA IG VSN  H  K L KAG  RW G RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWG P K
Sbjct:  113 KDMSVVSGEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLVGKD-NAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAGAKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGIPTK 255          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_STRSV (50S ribosomal protein L2 OS=Streptococcus sanguinis (strain SK36) GN=rplB PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.298e-34
Identity = 70/133 (52.63%), Postives = 92/133 (69.17%), Query Frame = 2
Query:  404 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 802
            ++G+ +PLA + +GT++HNIE+ PG+GG+LVRAAG SA++L +    + LVRL SG  ++I   CRAT+G V N  HG   L KAG+SRW G RP VRG  MNP DHPHGGGEG++       +   TPWGKP
Sbjct:  125 KVGNALPLANIPVGTLVHNIELKPGRGGELVRAAGASAQVLGQE-GKYTLVRLQSGEVRMILGTCRATVGVVGNEQHGLVNLGKAGRSRWKGIRPTVRGSVMNPNDHPHGGGEGKAPVG---RKAPSTPWGKP 253          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_STRGC (50S ribosomal protein L2 OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=rplB PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.298e-34
Identity = 70/133 (52.63%), Postives = 92/133 (69.17%), Query Frame = 2
Query:  404 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 802
            ++G+ +PLA + +GT++HNIE+ PG+GG+LVRAAG SA++L +    + LVRL SG  ++I   CRAT+G V N  HG   L KAG+SRW G RP VRG  MNP DHPHGGGEG++       +   TPWGKP
Sbjct:  125 KVGNALPLANIPVGTLVHNIELKPGRGGELVRAAGASAQVLGQE-GKYTLVRLQSGEVRMILGTCRATVGVVGNEQHGLVNLGKAGRSRWKGIRPTVRGSVMNPNDHPHGGGEGKAPVG---RKAPSTPWGKP 253          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_DINSH (50S ribosomal protein L2 OS=Dinoroseobacter shibae (strain DFL 12) GN=rplB PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.298e-34
Identity = 76/156 (48.72%), Postives = 100/156 (64.10%), Query Frame = 2
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCK 808
            P++  V DK++      DI    G+ MP + M IGTI+HNIE+ PG+GG++ RAAGT A+ +      +  +RL SG  +L+   C AT+G VSNP +  + L KAG++R  G RP VRGV MNPVDHPHGGGEGR+      GR  +TPWGKP K
Sbjct:  107 PQRTAVGDKVVASQK-ADIKP--GNAMPFSGMPIGTIVHNIELKPGKGGQIARAAGTYAQFVGRD-GGYAQIRLSSGELRLVRQECMATVGAVSNPDNSNQNLGKAGRNRHKGIRPSVRGVVMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK 254          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_CALS8 (50S ribosomal protein L2 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rplB PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.298e-34
Identity = 70/141 (49.65%), Postives = 99/141 (70.21%), Query Frame = 2
Query:  380 MAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 802
            M+  D + ++G+ +PL  + +GT+IHNIE+ PG+GG+LV++AG  A+++ +    + L+RLPSG  + +   CRATIG V N  H   ++ KAG+ RW+G RP VRG AMNPVDHPHGGGEG++   G+ G   LTPWGKP
Sbjct:  118 MSGPDADIKVGNALPLKYIPVGTMIHNIELYPGRGGQLVKSAGAVAQLMAKE-GKYALIRLPSGELRYVSQECRATIGQVGNLDHENVRIGKAGRKRWMGIRPTVRGSAMNPVDHPHGGGEGKA-PIGHPG--PLTPWGKP 254          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_BREBN (50S ribosomal protein L2 OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=rplB PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.298e-34
Identity = 77/154 (50.00%), Postives = 99/154 (64.29%), Query Frame = 2
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 802
            P    V D+I+   +  D + +IG+ +P+  + +GT IHNIE+ PG+GG+LVRAAGTSA++L      F +VRL SG  + I   CRATIG V N  H    + KAG+SRWLG RP VRG  MNP DHPHGGGEGR+       +  +TPWGKP
Sbjct:  107 PHNLKVGDQIV---SGADADIKIGNALPMEKIPVGTTIHNIELKPGKGGQLVRAAGTSAQLLGRD-GEFVIVRLSSGETRRIHNVCRATIGQVGNLDHELLNIGKAGRSRWLGIRPTVRGSVMNPNDHPHGGGEGRAPIG---RKAPVTPWGKP 253          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_STRZT (50S ribosomal protein L2 OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=rplB PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.919e-34
Identity = 71/133 (53.38%), Postives = 91/133 (68.42%), Query Frame = 2
Query:  404 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 802
            ++G+ +PLA + +GT+IHNIE+ PG+GG+LVRAAG SA++L      + LVRL SG  ++I   CRAT+G V N  HG   L KAG+SRW G RP VRG  MNP DHPHGGGEG++       +   TPWGKP
Sbjct:  125 KVGNALPLANIPVGTLIHNIELKPGRGGELVRAAGASAQVLGSE-GKYVLVRLQSGEVRMILGTCRATVGVVGNEQHGLVNLGKAGRSRWKGIRPTVRGSVMNPNDHPHGGGEGKAPVG---RKAPSTPWGKP 253          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_STRZP (50S ribosomal protein L2 OS=Streptococcus pneumoniae (strain P1031) GN=rplB PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.919e-34
Identity = 71/133 (53.38%), Postives = 91/133 (68.42%), Query Frame = 2
Query:  404 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 802
            ++G+ +PLA + +GT+IHNIE+ PG+GG+LVRAAG SA++L      + LVRL SG  ++I   CRAT+G V N  HG   L KAG+SRW G RP VRG  MNP DHPHGGGEG++       +   TPWGKP
Sbjct:  125 KVGNALPLANIPVGTLIHNIELKPGRGGELVRAAGASAQVLGSE-GKYVLVRLQSGEVRMILGTCRATVGVVGNEQHGLVNLGKAGRSRWKGIRPTVRGSVMNPNDHPHGGGEGKAPVG---RKAPSTPWGKP 253          
The following BLAST results are available for this feature:
BLAST of CX069470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_FRATF4.056e-3447.9750S ribosomal protein L2 OS=Francisella tularensis... [more]
RL2_FRAT14.056e-3447.9750S ribosomal protein L2 OS=Francisella tularensis... [more]
RL2_FRAP24.056e-3447.9750S ribosomal protein L2 OS=Francisella philomirag... [more]
RL2_STRSV5.298e-3452.6350S ribosomal protein L2 OS=Streptococcus sanguini... [more]
RL2_STRGC5.298e-3452.6350S ribosomal protein L2 OS=Streptococcus gordonii... [more]
RL2_DINSH5.298e-3448.7250S ribosomal protein L2 OS=Dinoroseobacter shibae... [more]
RL2_CALS85.298e-3449.6550S ribosomal protein L2 OS=Caldicellulosiruptor s... [more]
RL2_BREBN5.298e-3450.0050S ribosomal protein L2 OS=Brevibacillus brevis (... [more]
RL2_STRZT6.919e-3453.3850S ribosomal protein L2 OS=Streptococcus pneumoni... [more]
RL2_STRZP6.919e-3453.3850S ribosomal protein L2 OS=Streptococcus pneumoni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10F07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F07-K14-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069470 ID=CX069470; Name=CX069470; organism=Citrus sinensis; type=EST; length=808bp
CTCACTTAGAAAAACTCTCACGGTGGCCGTCACCTTTCTTCTCAGTGTGA
TCACCCATCTTTCAATTCCACAGCATTCTTTTCTCAGCCGTGGGGTGCTT
TAGCTTCTGTCACCGCCGGCAACATGTTGTGATAGACAGTGAAATCAACA
GAAGAAAACAAAACGTAGGAGAAAGAGACACAGAAAGAGATCAGCAGAAA
TGGCTTTGTGCAGAGTACGCTCAGCTTCATCGACGCTCTTCAACAGGCTT
CTCTGTCCTTCCGTTCTCAACAACAACACTACTTATCGCTATCAGTCCTC
TGAAACCGAATTAGTTGGTGATCCTTCAAAACAAGAAAAACCAAAAAAAG
AAACTGTGCGTGATAAGATAATGAGACAGATGGCTCATGTTGATATAAAT
TCTCAAATTGGAAGTTGCATGCCACTTGCTTGTATGCGTATTGGGACCAT
CATTCACAACATTGAGGTAAACCCAGGACAAGGTGGCAAGCTAGTTAGAG
CTGCGGGGACGTCAGCCAAGATTTTGAAAGAACCCACTTCAAGCTTCTGT
TTAGTAAGACTACCTTCTGGTAATGAGAAACTGATTGACACTAGATGTCG
AGCCACCATTGGTACAGTGTCTAACCCAAGCCATGGAGCTAAGAAGCTTA
GGAAGGCTGGTCAGAGCCGTTGGTTGGGTCGAAGACCTGTGGTTAGAGGA
GTAGCCATGAATCCAGTTGATCATCCTCATGGTGGAGGTGAGGGACGAAG
CAAAAGTAGTGGTAACCATGGACGGTGTTCACTTACACCTTGGGGCAAGC
CTTGCAAG
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