CX069470

Overview
NameCX069470
Unique NameCX069470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length808
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_STRP3 (50S ribosomal protein L2 OS=Streptococcus pyogenes serotype M3 GN=rplB PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 2.013e-33
Identity = 70/137 (51.09%), Postives = 93/137 (67.88%), Query Frame = 2
Query:  392 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 802
            D + ++G+ +PLA + +GT++HNIE+ PG+GG+LVRAAG SA++L +    + LVRL SG  ++I   CRATIGTV N       + KAG+SRW G RP VRG  MNP DHPHGGGEG++       +   TPWGKP
Sbjct:  121 DADIKVGNALPLANIPVGTVVHNIELKPGKGGELVRAAGASAQVLGQE-GKYVLVRLQSGEVRMILGTCRATIGTVGNEQQSLVNIGKAGRSRWKGIRPTVRGSVMNPNDHPHGGGEGKAPVG---RKAPSTPWGKP 253          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_STRP1 (50S ribosomal protein L2 OS=Streptococcus pyogenes serotype M1 GN=rplB PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.013e-33
Identity = 70/137 (51.09%), Postives = 93/137 (67.88%), Query Frame = 2
Query:  392 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 802
            D + ++G+ +PLA + +GT++HNIE+ PG+GG+LVRAAG SA++L +    + LVRL SG  ++I   CRATIGTV N       + KAG+SRW G RP VRG  MNP DHPHGGGEG++       +   TPWGKP
Sbjct:  121 DADIKVGNALPLANIPVGTVVHNIELKPGKGGELVRAAGASAQVLGQE-GKYVLVRLQSGEVRMILGTCRATIGTVGNEQQSLVNIGKAGRSRWKGIRPTVRGSVMNPNDHPHGGGEGKAPVG---RKAPSTPWGKP 253          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_STREM (50S ribosomal protein L2 OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=rplB PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.013e-33
Identity = 70/137 (51.09%), Postives = 93/137 (67.88%), Query Frame = 2
Query:  392 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 802
            D + +IG+ +PLA + +GT++HNIE+ PG+GG+LVRAAG SA++L +    + LVRL SG  ++I   CRAT+GTV N       + KAG+SRW G RP VRG  MNP DHPHGGGEG++       +   TPWGKP
Sbjct:  121 DADIKIGNALPLANIPVGTVVHNIELKPGKGGELVRAAGASAQVLGQE-GKYVLVRLQSGEVRMILGTCRATVGTVGNEQQSLVNIGKAGRSRWKGIRPTVRGSVMNPNDHPHGGGEGKAPVG---RKAPSTPWGKP 253          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_ANATD (50S ribosomal protein L2 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rplB PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.013e-33
Identity = 69/141 (48.94%), Postives = 99/141 (70.21%), Query Frame = 2
Query:  380 MAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 802
            M+  D + ++G+ +PL  + +GT+IHNIE+ PG+GG+L R+AG+ A+++ +    + L++LPSG  + +   CRATIG V N  H   ++ KAG+ RW+G RP VRG AMNPVDHPHGGGEG++   G+ G   LTPWGKP
Sbjct:  118 MSGPDADIKVGNALPLKNIPVGTMIHNIELMPGKGGQLCRSAGSVAQLMAKE-GKYALIKLPSGELRYVSQECRATIGQVGNLDHENVRIGKAGRKRWMGIRPTVRGSAMNPVDHPHGGGEGKA-PIGHPG--PLTPWGKP 254          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RK2_MARPO (50S ribosomal protein L2, chloroplastic OS=Marchantia polymorpha GN=rpl2 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.013e-33
Identity = 71/132 (53.79%), Postives = 89/132 (67.42%), Query Frame = 2
Query:  407 IGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 802
            IG+ +PL  M +GT IHNIE+ PG+GG+LVRAAGT AKI+ +       +RLPSG  +LI  +C ATIG + N      ++ KAG  RWLG+RP VRGV MNP+DHPHGGGEGR+       +  LTPWG P
Sbjct:  126 IGNTLPLTNMPLGTAIHNIEITPGKGGQLVRAAGTVAKIIAKE-GQLVTLRLPSGEIRLISQKCLATIGQIGNVDVNNLRIGKAGSKRWLGKRPKVRGVVMNPIDHPHGGGEGRAPIG---RKKPLTPWGHP 253          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_WOLWR (50S ribosomal protein L2 OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=rplB PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.629e-33
Identity = 73/133 (54.89%), Postives = 93/133 (69.92%), Query Frame = 2
Query:  410 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCK 808
            G+C+ L  + +G+ +HN+E+ PG G  + RAAG  A+I+      + L+RL SG  +LI + C+ATIG VSNP H  +KL KAG+SRWLG RP VRGVAMNPVDHPHGGGEG  K+SG  GR  +TPWG   K
Sbjct:  127 GNCLLLKHIPVGSFVHNVELKPGNGAAIARAAGCYAQIVGRD-GQYVLLRLRSGQIRLILSSCKATIGVVSNPDHKNRKLGKAGRSRWLGIRPTVRGVAMNPVDHPHGGGEG--KTSG--GRHPVTPWGVATK 254          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_THEYD (50S ribosomal protein L2 OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=rplB PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.629e-33
Identity = 75/141 (53.19%), Postives = 101/141 (71.63%), Query Frame = 2
Query:  380 MAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 802
            M+   I+ ++G+ +PL  + +GT+IHNIE+ P  GGKLVR+AGT+A+++ +    +  V+LPSG  +LI+  C ATIG VSN  H    + KAG++R +GRRP VRGVAMNP+DHP GGGEG  KSSG  GR + TPWGKP
Sbjct:  117 MSGSGIDIKVGNALPLKEIPLGTMIHNIELFPNGGGKLVRSAGTAAQLMAKE-GKYAHVKLPSGEVRLINVNCFATIGQVSNLEHENVIIGKAGRTRHMGRRPSVRGVAMNPIDHPLGGGEG--KSSG--GRAACTPWGKP 252          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_THESQ (50S ribosomal protein L2 OS=Thermotoga sp. (strain RQ2) GN=rplB PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.629e-33
Identity = 73/156 (46.79%), Postives = 101/156 (64.74%), Query Frame = 2
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCK 808
            PK   V D +M   +  D   + G+ +PL  + +GT++HN+E  PG+GG++ RAAGT  +I+ +   ++ L+R+PSG  + +  +C AT+G V N  H  +   KAG+ RWLGRRP VRGVAMNPVDHPHGGGEGR K  G+H     +PWG P K
Sbjct:  108 PKGVNVGDTLM---SGPDAEIRPGNALPLEKIPVGTLVHNVEFTPGKGGQIARAAGTYCQIMAKE-GNYALLRMPSGELRKVHIKCYATVGVVGNEDHKNEVHGKAGRVRWLGRRPHVRGVAMNPVDHPHGGGEGRGK--GHH---PTSPWGLPTK 254          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_THEP1 (50S ribosomal protein L2 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplB PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.629e-33
Identity = 73/156 (46.79%), Postives = 101/156 (64.74%), Query Frame = 2
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCK 808
            PK   V D +M   +  D   + G+ +PL  + +GT++HN+E  PG+GG++ RAAGT  +I+ +   ++ L+R+PSG  + +  +C AT+G V N  H  +   KAG+ RWLGRRP VRGVAMNPVDHPHGGGEGR K  G+H     +PWG P K
Sbjct:  108 PKGVNVGDTLM---SGPDAEIRPGNALPLEKIPVGTLVHNVEFTPGKGGQIARAAGTYCQIMAKE-GNYALLRMPSGELRKVHIKCYATVGVVGNEDHKNEVHGKAGRVRWLGRRPHVRGVAMNPVDHPHGGGEGRGK--GHH---PTSPWGLPTK 254          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_THEMA (50S ribosomal protein L2 OS=Thermotoga maritima GN=rplB PE=3 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.629e-33
Identity = 73/156 (46.79%), Postives = 101/156 (64.74%), Query Frame = 2
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCK 808
            PK   V D +M   +  D   + G+ +PL  + +GT++HN+E  PG+GG++ RAAGT  +I+ +   ++ L+R+PSG  + +  +C AT+G V N  H  +   KAG+ RWLGRRP VRGVAMNPVDHPHGGGEGR K  G+H     +PWG P K
Sbjct:  108 PKGVNVGDTLM---SGPDAEIRPGNALPLEKIPVGTLVHNVEFTPGKGGQIARAAGTYCQIMAKE-GNYALLRMPSGELRKVHIKCYATVGVVGNEDHKNEVHGKAGRVRWLGRRPHVRGVAMNPVDHPHGGGEGRGK--GHH---PTSPWGLPTK 254          
The following BLAST results are available for this feature:
BLAST of CX069470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_STRP32.013e-3351.0950S ribosomal protein L2 OS=Streptococcus pyogenes... [more]
RL2_STRP12.013e-3351.0950S ribosomal protein L2 OS=Streptococcus pyogenes... [more]
RL2_STREM2.013e-3351.0950S ribosomal protein L2 OS=Streptococcus equi sub... [more]
RL2_ANATD2.013e-3348.9450S ribosomal protein L2 OS=Anaerocellum thermophi... [more]
RK2_MARPO2.013e-3353.7950S ribosomal protein L2, chloroplastic OS=Marchan... [more]
RL2_WOLWR2.629e-3354.8950S ribosomal protein L2 OS=Wolbachia sp. subsp. D... [more]
RL2_THEYD2.629e-3353.1950S ribosomal protein L2 OS=Thermodesulfovibrio ye... [more]
RL2_THESQ2.629e-3346.7950S ribosomal protein L2 OS=Thermotoga sp. (strain... [more]
RL2_THEP12.629e-3346.7950S ribosomal protein L2 OS=Thermotoga petrophila ... [more]
RL2_THEMA2.629e-3346.7950S ribosomal protein L2 OS=Thermotoga maritima GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10F07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F07-K14-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069470 ID=CX069470; Name=CX069470; organism=Citrus sinensis; type=EST; length=808bp
CTCACTTAGAAAAACTCTCACGGTGGCCGTCACCTTTCTTCTCAGTGTGA
TCACCCATCTTTCAATTCCACAGCATTCTTTTCTCAGCCGTGGGGTGCTT
TAGCTTCTGTCACCGCCGGCAACATGTTGTGATAGACAGTGAAATCAACA
GAAGAAAACAAAACGTAGGAGAAAGAGACACAGAAAGAGATCAGCAGAAA
TGGCTTTGTGCAGAGTACGCTCAGCTTCATCGACGCTCTTCAACAGGCTT
CTCTGTCCTTCCGTTCTCAACAACAACACTACTTATCGCTATCAGTCCTC
TGAAACCGAATTAGTTGGTGATCCTTCAAAACAAGAAAAACCAAAAAAAG
AAACTGTGCGTGATAAGATAATGAGACAGATGGCTCATGTTGATATAAAT
TCTCAAATTGGAAGTTGCATGCCACTTGCTTGTATGCGTATTGGGACCAT
CATTCACAACATTGAGGTAAACCCAGGACAAGGTGGCAAGCTAGTTAGAG
CTGCGGGGACGTCAGCCAAGATTTTGAAAGAACCCACTTCAAGCTTCTGT
TTAGTAAGACTACCTTCTGGTAATGAGAAACTGATTGACACTAGATGTCG
AGCCACCATTGGTACAGTGTCTAACCCAAGCCATGGAGCTAAGAAGCTTA
GGAAGGCTGGTCAGAGCCGTTGGTTGGGTCGAAGACCTGTGGTTAGAGGA
GTAGCCATGAATCCAGTTGATCATCCTCATGGTGGAGGTGAGGGACGAAG
CAAAAGTAGTGGTAACCATGGACGGTGTTCACTTACACCTTGGGGCAAGC
CTTGCAAG
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