CX069470

Overview
NameCX069470
Unique NameCX069470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length808
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8194 contig Csv1_Contig8194:1..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_BACWK (50S ribosomal protein L2 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplB PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.541e-36
Identity = 77/145 (53.10%), Postives = 104/145 (71.72%), Query Frame = 2
Query:  371 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKP 802
            M  M+  + + +IG+ +PL  + +GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+ + CRA+IG V N  H   K+ KAG+SRWLG+RP VRG  MNPVDHPHGGGEGRS      GR S ++PWGKP
Sbjct:  114 MEVMSGPESDIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGKE-GKYVLVRLTSGEVRLVLSACRASIGQVGNEQHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPI----GRKSPMSPWGKP 253          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_NEOSM (50S ribosomal protein L2 OS=Neorickettsia sennetsu (strain Miyayama) GN=rplB PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.318e-36
Identity = 77/133 (57.89%), Postives = 98/133 (73.68%), Query Frame = 2
Query:  410 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCK 808
            G+CMPL  + +GT +HN+E+ PG GG+LVR+AG+SA+++     ++ LV LPSG ++LI + C ATIG VSN      KL KAG+SRWLGRRP VRGVAMNPVDHP GGGEG  K+SG  GR  ++PWG P K
Sbjct:  132 GACMPLGKVPLGTTVHNVELKPGAGGQLVRSAGSSARVIARD-GNYTLVTLPSGEKRLILSTCHATIGAVSNADRKNTKLGKAGRSRWLGRRPSVRGVAMNPVDHPMGGGEG--KTSG--GRHPVSPWGFPTK 259          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_DICT6 (50S ribosomal protein L2 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rplB PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.318e-36
Identity = 79/141 (56.03%), Postives = 100/141 (70.92%), Query Frame = 2
Query:  380 MAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 802
            M+  +++ +IG+ +PL  +  GT+IHN+E+ PG+GG+LVRAAGT+A+IL +    +  VRLPSG  +L D  CRATIG VSN  H    L KAG+SRWLGRRP VRG AMNPVDHPHGGGEG++          LTPWGKP
Sbjct:  117 MSGENVDIKIGNNLPLKNIPDGTLIHNLELYPGRGGQLVRAAGTAAQILGKE-GKWAYVRLPSGEIRLFDLNCRATIGQVSNVDHQNVSLGKAGRSRWLGRRPHVRGSAMNPVDHPHGGGEGKAPIG---HPSPLTPWGKP 253          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_THETN (50S ribosomal protein L2 OS=Thermoanaerobacter tengcongensis GN=rplB PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.660e-36
Identity = 74/137 (54.01%), Postives = 102/137 (74.45%), Query Frame = 2
Query:  392 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 802
            +++ ++G+ +PL  + +GTI+HNIE+ PG+GG+LVRAAG +A+++ +    +  +R+PSG  +LI+  CRATIG VSN  H   K+ KAG+SRWLG RP VRG AMNPVDHPHGGGEG++   G+ G   LTPWGKP
Sbjct:  121 NVDIKVGNALPLRNIPVGTIVHNIELIPGKGGQLVRAAGAAAQLMAKE-GDYVHIRMPSGEIRLINANCRATIGQVSNIDHENVKIGKAGRSRWLGIRPTVRGSAMNPVDHPHGGGEGKA-PIGHPG--PLTPWGKP 253          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_RHORT (50S ribosomal protein L2 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rplB PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.660e-36
Identity = 73/133 (54.89%), Postives = 96/133 (72.18%), Query Frame = 2
Query:  410 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCK 808
            G+ MPL  M +GTIIHN+E+ PG+GG+L R+AG  A+++ +  + +  +RL SG  +L+   C AT+G VSNP +  +KL KAG+SRW+GRRP VRGV MNPVDHPHGGGEGR+      GR  +TPWGKP K
Sbjct:  127 GNAMPLKNMPVGTIIHNVEMKPGKGGQLARSAGCYAQLIGKD-AGYAQLRLSSGELRLVRGECLATVGAVSNPDNQNEKLGKAGRSRWMGRRPHVRGVVMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK 254          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_RHOPS (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplB PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.660e-36
Identity = 77/156 (49.36%), Postives = 106/156 (67.95%), Query Frame = 2
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCK 808
            P++ +V D ++   ++VD+    G+ MPL  M +GTI+HNIE+  G+GG++ R+AGT A+++      + +VRL SG ++L+  RC ATIG VSNP H    + KAG+ RWLGRRP  RGV MNP+DHPHGGGEGR+      GR  +TPWGKP K
Sbjct:  107 PQRLSVGDSVIAG-SYVDVKP--GNVMPLGNMPVGTIVHNIELKIGKGGQIARSAGTYAQLVGRD-HDYVIVRLNSGEQRLVHGRCTATIGAVSNPDHMNISIGKAGRKRWLGRRPHNRGVVMNPIDHPHGGGEGRTSG----GRHPVTPWGKPTK 254          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_PARL1 (50S ribosomal protein L2 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rplB PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.660e-36
Identity = 69/133 (51.88%), Postives = 95/133 (71.43%), Query Frame = 2
Query:  410 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCK 808
            G+ MPLA + +GTI+HN+E+ PG+GG++ R+AGT  +++      + L+RL SG ++++   C A+IG VSNP H    + KAG++RWLG+RP VRGV MNPVDHPHGGGEGR+      GR  +TPWGKP K
Sbjct:  127 GNAMPLANIPVGTIVHNVEMKPGKGGQIARSAGTYVQLVGRD-QGYALLRLSSGEQRMVPATCMASIGAVSNPDHSNITIAKAGRNRWLGKRPHVRGVVMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK 254          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_BART1 (50S ribosomal protein L2 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rplB PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.392e-36
Identity = 75/156 (48.08%), Postives = 106/156 (67.95%), Query Frame = 2
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCK 808
            P++  V D ++   A  +++ + G+ MPL  M +GTIIHN+E+ PG+GG++ R+AG  A+++        ++RL SG ++L+ + C AT+G VSNP HG     KAG+SRW G+RP VRGVAMNPVDHPHGGGEGR+      GR  ++PWGKP K
Sbjct:  107 PQRLGVGDSVV---AGSNVDVKPGNAMPLGNMPVGTIIHNVEMKPGKGGQIARSAGAYAQLVGRD-HGMAILRLNSGEQRLVSSSCFATVGAVSNPDHGNINDGKAGRSRWRGKRPHVRGVAMNPVDHPHGGGEGRTSG----GRHPVSPWGKPTK 254          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_RICM5 (50S ribosomal protein L2 OS=Rickettsia massiliae (strain Mtu5) GN=rplB PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.654e-36
Identity = 76/156 (48.72%), Postives = 109/156 (69.87%), Query Frame = 2
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCK 808
            P+K +V ++++      D + +IG+C+PL C+ IGT +HN+E+  G+GG++ R+AGTS  ++ +  S +  ++L SG  +L+   C+ATIG++SNP      L KAG++RWLG RP VRGVAMNPVDHPHGGGEG  K+SG  GR  +TPWG P K
Sbjct:  107 PQKLSVGNRVISSQ---DADIKIGNCLPLKCIPIGTTLHNVEMQVGKGGQIARSAGTSVDLVGKD-SGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLGWRPHVRGVAMNPVDHPHGGGEG--KTSG--GRHPVTPWGFPTK 254          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_RHISN (50S ribosomal protein L2 OS=Rhizobium sp. (strain NGR234) GN=rplB PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.654e-36
Identity = 75/156 (48.08%), Postives = 103/156 (66.03%), Query Frame = 2
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCK 808
            P++    DK++     VD+    G+ MPL  + +G+IIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A+IG VSNP HG     KAG+SRW G+RP VRGV MNPVDHPHGGGEGR+      GR  +TPWGKP K
Sbjct:  107 PQRLAAGDKVIASDKAVDVKP--GNTMPLQFIPVGSIIHNVEMKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVHGSCLASIGAVSNPDHGNINDGKAGRSRWRGKRPHVRGVVMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK 255          
The following BLAST results are available for this feature:
BLAST of CX069470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_BACWK2.541e-3653.1050S ribosomal protein L2 OS=Bacillus weihenstephan... [more]
RL2_NEOSM3.318e-3657.8950S ribosomal protein L2 OS=Neorickettsia sennetsu... [more]
RL2_DICT63.318e-3656.0350S ribosomal protein L2 OS=Dictyoglomus thermophi... [more]
RL2_THETN5.660e-3654.0150S ribosomal protein L2 OS=Thermoanaerobacter ten... [more]
RL2_RHORT5.660e-3654.8950S ribosomal protein L2 OS=Rhodospirillum rubrum ... [more]
RL2_RHOPS5.660e-3649.3650S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]
RL2_PARL15.660e-3651.8850S ribosomal protein L2 OS=Parvibaculum lavamenti... [more]
RL2_BART17.392e-3648.0850S ribosomal protein L2 OS=Bartonella tribocorum ... [more]
RL2_RICM59.654e-3648.7250S ribosomal protein L2 OS=Rickettsia massiliae (... [more]
RL2_RHISN9.654e-3648.0850S ribosomal protein L2 OS=Rhizobium sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10F07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F07-K14-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069470 ID=CX069470; Name=CX069470; organism=Citrus sinensis; type=EST; length=808bp
CTCACTTAGAAAAACTCTCACGGTGGCCGTCACCTTTCTTCTCAGTGTGA
TCACCCATCTTTCAATTCCACAGCATTCTTTTCTCAGCCGTGGGGTGCTT
TAGCTTCTGTCACCGCCGGCAACATGTTGTGATAGACAGTGAAATCAACA
GAAGAAAACAAAACGTAGGAGAAAGAGACACAGAAAGAGATCAGCAGAAA
TGGCTTTGTGCAGAGTACGCTCAGCTTCATCGACGCTCTTCAACAGGCTT
CTCTGTCCTTCCGTTCTCAACAACAACACTACTTATCGCTATCAGTCCTC
TGAAACCGAATTAGTTGGTGATCCTTCAAAACAAGAAAAACCAAAAAAAG
AAACTGTGCGTGATAAGATAATGAGACAGATGGCTCATGTTGATATAAAT
TCTCAAATTGGAAGTTGCATGCCACTTGCTTGTATGCGTATTGGGACCAT
CATTCACAACATTGAGGTAAACCCAGGACAAGGTGGCAAGCTAGTTAGAG
CTGCGGGGACGTCAGCCAAGATTTTGAAAGAACCCACTTCAAGCTTCTGT
TTAGTAAGACTACCTTCTGGTAATGAGAAACTGATTGACACTAGATGTCG
AGCCACCATTGGTACAGTGTCTAACCCAAGCCATGGAGCTAAGAAGCTTA
GGAAGGCTGGTCAGAGCCGTTGGTTGGGTCGAAGACCTGTGGTTAGAGGA
GTAGCCATGAATCCAGTTGATCATCCTCATGGTGGAGGTGAGGGACGAAG
CAAAAGTAGTGGTAACCATGGACGGTGTTCACTTACACCTTGGGGCAAGC
CTTGCAAG
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