CX069470

Overview
NameCX069470
Unique NameCX069470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length808
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8194 contig Csv1_Contig8194:1..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_BRUSU (50S ribosomal protein L2 OS=Brucella suis GN=rplB PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.654e-36
Identity = 75/156 (48.08%), Postives = 106/156 (67.95%), Query Frame = 2 
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCK 808
            P++  V D+++   A   ++ + G+ MPL+ M +GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+S W G+RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWGKP K
Sbjct:  107 PQRLAVGDQVV---AGNSVDVKPGNAMPLSSMPVGTIIHNVELKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSVWRGKRPHVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK 254
[Close]
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_BRUSI (50S ribosomal protein L2 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=rplB PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.654e-36
Identity = 75/156 (48.08%), Postives = 106/156 (67.95%), Query Frame = 2 
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCK 808
            P++  V D+++   A   ++ + G+ MPL+ M +GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+S W G+RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWGKP K
Sbjct:  107 PQRLAVGDQVV---AGNSVDVKPGNAMPLSSMPVGTIIHNVELKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSVWRGKRPHVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK 254
[Close]
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_BRUMB (50S ribosomal protein L2 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rplB PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.654e-36
Identity = 75/156 (48.08%), Postives = 106/156 (67.95%), Query Frame = 2 
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCK 808
            P++  V D+++   A   ++ + G+ MPL+ M +GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+S W G+RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWGKP K
Sbjct:  107 PQRLAVGDQVV---AGNSVDVKPGNAMPLSSMPVGTIIHNVELKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSVWRGKRPHVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK 254
[Close]
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_BRUC2 (50S ribosomal protein L2 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rplB PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.654e-36
Identity = 75/156 (48.08%), Postives = 106/156 (67.95%), Query Frame = 2 
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCK 808
            P++  V D+++   A   ++ + G+ MPL+ M +GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+S W G+RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWGKP K
Sbjct:  107 PQRLAVGDQVV---AGNSVDVKPGNAMPLSSMPVGTIIHNVELKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSVWRGKRPHVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK 254
[Close]
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_BRUAB (50S ribosomal protein L2 OS=Brucella abortus GN=rplB PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.654e-36
Identity = 75/156 (48.08%), Postives = 106/156 (67.95%), Query Frame = 2 
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCK 808
            P++  V D+++   A   ++ + G+ MPL+ M +GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+S W G+RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWGKP K
Sbjct:  107 PQRLAVGDQVV---AGNSVDVKPGNAMPLSSMPVGTIIHNVELKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSVWRGKRPHVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK 254
[Close]
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_BRUA2 (50S ribosomal protein L2 OS=Brucella abortus (strain 2308) GN=rplB PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.654e-36
Identity = 75/156 (48.08%), Postives = 106/156 (67.95%), Query Frame = 2 
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCK 808
            P++  V D+++   A   ++ + G+ MPL+ M +GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+S W G+RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWGKP K
Sbjct:  107 PQRLAVGDQVV---AGNSVDVKPGNAMPLSSMPVGTIIHNVELKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSVWRGKRPHVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK 254
[Close]
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_BRUA1 (50S ribosomal protein L2 OS=Brucella abortus (strain S19) GN=rplB PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.654e-36
Identity = 75/156 (48.08%), Postives = 106/156 (67.95%), Query Frame = 2 
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCK 808
            P++  V D+++   A   ++ + G+ MPL+ M +GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+S W G+RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWGKP K
Sbjct:  107 PQRLAVGDQVV---AGNSVDVKPGNAMPLSSMPVGTIIHNVELKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSVWRGKRPHVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK 254
[Close]
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_RICCK (50S ribosomal protein L2 OS=Rickettsia canadensis (strain McKiel) GN=rplB PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.261e-35
Identity = 78/156 (50.00%), Postives = 108/156 (69.23%), Query Frame = 2 
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCK 808
            P+K +V DK++      D + +IG+C+PL  + IGT +HN+E+  G+GG++ R+AGTS  ++ +  S +  ++L SG  +LI   C+ATIG++SNP      L KAG++RWLG RP VRGVAMNPVDHPHGGGEG  K+SG  GR  +TPWG P K
Sbjct:  107 PQKLSVGDKVISSQ---DADIKIGNCLPLKFIPIGTTVHNVEMKVGKGGQIARSAGTSVDLVGKD-SGYAQIKLRSGEFRLIPLDCKATIGSISNPDQKNINLGKAGRNRWLGWRPHVRGVAMNPVDHPHGGGEG--KTSG--GRHPVTPWGFPTK 254
[Close]
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_RICBR (50S ribosomal protein L2 OS=Rickettsia bellii (strain RML369-C) GN=rplB PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.261e-35
Identity = 80/156 (51.28%), Postives = 106/156 (67.95%), Query Frame = 2 
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCK 808
            P+K  V DKI+      D + +IG+C+PL  + IGT +HN+E+  G+GG++ R+AGTS  ++ +  S +  ++L SG  +L+   C ATIGTVSNP      L KAG++RWLG RP VRGVAMNPVDHPHGGGEG  K+SG  GR  +TPWG P K
Sbjct:  107 PQKLVVGDKIISSK---DADIKIGNCLPLRYIPIGTTLHNVEMKVGKGGQIARSAGTSVDLVGKD-SGYAQIKLKSGEFRLVPLDCMATIGTVSNPDQKNINLGKAGRNRWLGWRPHVRGVAMNPVDHPHGGGEG--KTSG--GRHPVTPWGFPTK 254
[Close]
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_RICB8 (50S ribosomal protein L2 OS=Rickettsia bellii (strain OSU 85-389) GN=rplB PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.261e-35
Identity = 80/156 (51.28%), Postives = 106/156 (67.95%), Query Frame = 2 
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCK 808
            P+K  V DKI+      D + +IG+C+PL  + IGT +HN+E+  G+GG++ R+AGTS  ++ +  S +  ++L SG  +L+   C ATIGTVSNP      L KAG++RWLG RP VRGVAMNPVDHPHGGGEG  K+SG  GR  +TPWG P K
Sbjct:  107 PQKLVVGDKIISSK---DADIKIGNCLPLRYIPIGTTLHNVEMKVGKGGQIARSAGTSVDLVGKD-SGYAQIKLKSGEFRLVPLDCMATIGTVSNPDQKNINLGKAGRNRWLGWRPHVRGVAMNPVDHPHGGGEG--KTSG--GRHPVTPWGFPTK 254
The following BLAST results are available for this feature:
BLAST of CX069470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_BRUSU9.654e-3648.0850S ribosomal protein L2 OS=Brucella suis GN=rplB ... [more]
RL2_BRUSI9.654e-3648.0850S ribosomal protein L2 OS=Brucella suis (strain ... [more]
RL2_BRUMB9.654e-3648.0850S ribosomal protein L2 OS=Brucella melitensis bi... [more]
RL2_BRUC29.654e-3648.0850S ribosomal protein L2 OS=Brucella canis (strain... [more]
RL2_BRUAB9.654e-3648.0850S ribosomal protein L2 OS=Brucella abortus GN=rp... [more]
RL2_BRUA29.654e-3648.0850S ribosomal protein L2 OS=Brucella abortus (stra... [more]
RL2_BRUA19.654e-3648.0850S ribosomal protein L2 OS=Brucella abortus (stra... [more]
RL2_RICCK1.261e-3550.0050S ribosomal protein L2 OS=Rickettsia canadensis ... [more]
RL2_RICBR1.261e-3551.2850S ribosomal protein L2 OS=Rickettsia bellii (str... [more]
RL2_RICB81.261e-3551.2850S ribosomal protein L2 OS=Rickettsia bellii (str... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_10F07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F07-K14-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069470 ID=CX069470; Name=CX069470; organism=Citrus sinensis; type=EST; length=808bp
CTCACTTAGAAAAACTCTCACGGTGGCCGTCACCTTTCTTCTCAGTGTGA
TCACCCATCTTTCAATTCCACAGCATTCTTTTCTCAGCCGTGGGGTGCTT
TAGCTTCTGTCACCGCCGGCAACATGTTGTGATAGACAGTGAAATCAACA
GAAGAAAACAAAACGTAGGAGAAAGAGACACAGAAAGAGATCAGCAGAAA
TGGCTTTGTGCAGAGTACGCTCAGCTTCATCGACGCTCTTCAACAGGCTT
CTCTGTCCTTCCGTTCTCAACAACAACACTACTTATCGCTATCAGTCCTC
TGAAACCGAATTAGTTGGTGATCCTTCAAAACAAGAAAAACCAAAAAAAG
AAACTGTGCGTGATAAGATAATGAGACAGATGGCTCATGTTGATATAAAT
TCTCAAATTGGAAGTTGCATGCCACTTGCTTGTATGCGTATTGGGACCAT
CATTCACAACATTGAGGTAAACCCAGGACAAGGTGGCAAGCTAGTTAGAG
CTGCGGGGACGTCAGCCAAGATTTTGAAAGAACCCACTTCAAGCTTCTGT
TTAGTAAGACTACCTTCTGGTAATGAGAAACTGATTGACACTAGATGTCG
AGCCACCATTGGTACAGTGTCTAACCCAAGCCATGGAGCTAAGAAGCTTA
GGAAGGCTGGTCAGAGCCGTTGGTTGGGTCGAAGACCTGTGGTTAGAGGA
GTAGCCATGAATCCAGTTGATCATCCTCATGGTGGAGGTGAGGGACGAAG
CAAAAGTAGTGGTAACCATGGACGGTGTTCACTTACACCTTGGGGCAAGC
CTTGCAAG
back to top