CX069470

Overview
NameCX069470
Unique NameCX069470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length808
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8194 contig Csv1_Contig8194:1..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_PELTS (50S ribosomal protein L2 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rplB PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.791e-35
Identity = 73/137 (53.28%), Postives = 94/137 (68.61%), Query Frame = 2
Query:  392 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 802
            D + + G+C+PL  + +GT+IHNIE+ P  GGKLVR+AG SA+++ +    +  +R+PSG  +L+   CRATIG V N  H    + KAG+ RWLG RP VRGV MNPVDHPHGGGEGRS      GR  +TPWGKP
Sbjct:  121 DADIKAGNCLPLKNIPVGTMIHNIELYPNGGGKLVRSAGASAQLMAKE-GKYANIRMPSGEMRLLLQECRATIGQVGNVEHENITIGKAGRKRWLGIRPTVRGVVMNPVDHPHGGGEGRSPI----GRNPVTPWGKP 252          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_ORITB (50S ribosomal protein L2 OS=Orientia tsutsugamushi (strain Boryong) GN=rplB PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.791e-35
Identity = 81/156 (51.92%), Postives = 105/156 (67.31%), Query Frame = 2
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCK 808
            P+   V DKI+      +IN  +G+C+ L  + +GTIIHNIE+ PG+GG++ R+AGT A +L +  S +  ++L SG  + I    RAT+G+VSN  H      KAG+ RWLGRRPVVRGVAMNPVDHPHGGGEG  K+SG  GR  +TPWGK  K
Sbjct:  107 PRNLNVGDKIISS-DKAEIN--VGNCLSLEVIPVGTIIHNIEIKPGKGGQIARSAGTYAVLLNKD-SGYAQIKLRSGEVRRISLASRATVGSVSNIDHKNISYGKAGRVRWLGRRPVVRGVAMNPVDHPHGGGEG--KTSG--GRHPVTPWGKKTK 254          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_EXISA (50S ribosomal protein L2 OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=rplB PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.791e-35
Identity = 76/144 (52.78%), Postives = 98/144 (68.06%), Query Frame = 2
Query:  371 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 802
            M  M+  + + ++G+ +PL  + +GT IHNIE+ PG+GG+LVRAAG SA+I +     + +VRL SG  +L    CRATIG+V N  H    + KAG+SRWLG+RP VRG  MNPVDHPHGGGEGR+   G  G   LTPWGKP
Sbjct:  114 MEIMSGPEADIKVGNALPLVNIPVGTTIHNIELKPGKGGQLVRAAGASAQI-QGRDGKYVIVRLQSGESRLFLGTCRATIGSVGNEEHELVNIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRA-PIGRSG--PLTPWGKP 253          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_RHOP2 (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain HaA2) GN=rplB PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.258e-35
Identity = 76/156 (48.72%), Postives = 105/156 (67.31%), Query Frame = 2
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCK 808
            P++  V D ++   A+VD+    G+ MPL  M IGTI+HN+E+  G+GG++ R+AGT A+++      + ++RL SG ++L+  RC ATIG VSNP H    + KAG++RWLG RP  RGV MNP+DHPHGGGEGR+      GR  +TPWGKP K
Sbjct:  107 PQRLAVGDTVIAG-AYVDVKP--GNVMPLGNMPIGTIVHNVELKIGKGGQIARSAGTYAQLVGRD-HDYVIMRLNSGEQRLVHGRCTATIGAVSNPDHMNISIGKAGRTRWLGWRPHNRGVVMNPIDHPHGGGEGRTSG----GRHPVTPWGKPTK 254          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_STRSY (50S ribosomal protein L2 OS=Streptococcus suis (strain 05ZYH33) GN=rplB PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.067e-34
Identity = 71/133 (53.38%), Postives = 93/133 (69.92%), Query Frame = 2
Query:  404 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 802
            ++G+ +PLA + +GT++HNIE+ PG+GG+LVRAAG SA++L +    + LVRL SG  ++I   CRAT+GTV N  HG   L KAG+SRW G RP VRG  MNP DHPHGGGEG++       +   TPWGKP
Sbjct:  125 KVGNALPLANIPVGTVVHNIELKPGRGGELVRAAGASAQVLGQE-GKYVLVRLQSGEVRMILGTCRATVGTVGNEQHGLVNLGKAGRSRWKGIRPTVRGSVMNPNDHPHGGGEGKAPVG---RKAPSTPWGKP 253          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_STRS2 (50S ribosomal protein L2 OS=Streptococcus suis (strain 98HAH33) GN=rplB PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.067e-34
Identity = 71/133 (53.38%), Postives = 93/133 (69.92%), Query Frame = 2
Query:  404 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 802
            ++G+ +PLA + +GT++HNIE+ PG+GG+LVRAAG SA++L +    + LVRL SG  ++I   CRAT+GTV N  HG   L KAG+SRW G RP VRG  MNP DHPHGGGEG++       +   TPWGKP
Sbjct:  125 KVGNALPLANIPVGTVVHNIELKPGRGGELVRAAGASAQVLGQE-GKYVLVRLQSGEVRMILGTCRATVGTVGNEQHGLVNLGKAGRSRWKGIRPTVRGSVMNPNDHPHGGGEGKAPVG---RKAPSTPWGKP 253          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_GLUDA (50S ribosomal protein L2 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rplB PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.067e-34
Identity = 74/142 (52.11%), Postives = 98/142 (69.01%), Query Frame = 2
Query:  383 AHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCK 808
            A VDI    G+ MPL+ + +GTI+HNIE+  G GGK+ R+AGT A+++ +  S +  ++L SG  +++   C ATIG VSNP +  + + KAG+SRWLGRRP  RGV MNPVDHPHGGGEGR+      GR  +TPWGKP K
Sbjct:  120 ARVDIKP--GNAMPLSAIPVGTIVHNIELKQGAGGKMARSAGTYAQLVGKD-SGYAQIKLQSGELRVVRGECMATIGAVSNPDNMNQHMGKAGRSRWLGRRPHNRGVVMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK 254          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_SULSY (50S ribosomal protein L2 OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=rplB PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.394e-34
Identity = 73/143 (51.05%), Postives = 96/143 (67.13%), Query Frame = 2
Query:  380 MAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCK 808
            MA  D   ++G+ +PL  + +GT++HNIE+ PG+GG+LVRAAG SA+IL      +  +RLPSG  +L+  +C ATIG V    H   +L KAG+SRWLG RP VRG AMNP DHPHGGGEGR+      G+  ++PWG P K
Sbjct:  117 MAGPDAEIKVGNALPLENIPVGTLVHNIELTPGKGGQLVRAAGMSAQILGRE-GDYVQIRLPSGELRLVYKKCMATIGAVGLAEHELLELGKAGRSRWLGIRPTVRGTAMNPADHPHGGGEGRT-----FGKHPVSPWGLPTK 253          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_GRABC (50S ribosomal protein L2 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rplB PE=3 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.394e-34
Identity = 70/133 (52.63%), Postives = 93/133 (69.92%), Query Frame = 2
Query:  410 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCK 808
            G+ MPL  + +GTIIHNIE+ PG GGK+ R+AGT A+++ +  + +  ++L SG  +++   C AT+G VSNP +    + KAG+SRWLGRRP  RGV MNPVDHPHGGGEGR+      GR  +TPWGKP K
Sbjct:  127 GNAMPLGAIPVGTIIHNIEMKPGAGGKIARSAGTYAQLVGKD-AGYAQIKLMSGELRVVRAECYATVGAVSNPDNSNIHIGKAGRSRWLGRRPHNRGVVMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK 254          
BLAST of CX069470 vs. ExPASy Swiss-Prot
Match: RL2_GEOTN (50S ribosomal protein L2 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rplB PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.394e-34
Identity = 72/145 (49.66%), Postives = 102/145 (70.34%), Query Frame = 2
Query:  371 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKP 802
            M  M+  + + ++G+ +PL  + +GT++HNIE+ PG+GG+LVRAAGTSA++L +    + ++RL SG  ++I  +CRAT+G V N  H    + KAG++RWLG RP VRG  MNPVDHPHGGGEG++      GR S +TPWGKP
Sbjct:  114 MEIMSGPNADIKVGNALPLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGKE-GKYVIIRLASGEVRMILGKCRATVGEVGNEQHELVNIGKAGRARWLGIRPTVRGSVMNPVDHPHGGGEGKAPI----GRKSPMTPWGKP 253          
The following BLAST results are available for this feature:
BLAST of CX069470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_PELTS4.791e-3553.2850S ribosomal protein L2 OS=Pelotomaculum thermopr... [more]
RL2_ORITB4.791e-3551.9250S ribosomal protein L2 OS=Orientia tsutsugamushi... [more]
RL2_EXISA4.791e-3552.7850S ribosomal protein L2 OS=Exiguobacterium sp. (s... [more]
RL2_RHOP26.258e-3548.7250S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]
RL2_STRSY1.067e-3453.3850S ribosomal protein L2 OS=Streptococcus suis (st... [more]
RL2_STRS21.067e-3453.3850S ribosomal protein L2 OS=Streptococcus suis (st... [more]
RL2_GLUDA1.067e-3452.1150S ribosomal protein L2 OS=Gluconacetobacter diaz... [more]
RL2_SULSY1.394e-3451.0550S ribosomal protein L2 OS=Sulfurihydrogenibium s... [more]
RL2_GRABC1.394e-3452.6350S ribosomal protein L2 OS=Granulibacter bethesde... [more]
RL2_GEOTN1.394e-3449.6650S ribosomal protein L2 OS=Geobacillus thermodeni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10F07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F07-K14-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069470 ID=CX069470; Name=CX069470; organism=Citrus sinensis; type=EST; length=808bp
CTCACTTAGAAAAACTCTCACGGTGGCCGTCACCTTTCTTCTCAGTGTGA
TCACCCATCTTTCAATTCCACAGCATTCTTTTCTCAGCCGTGGGGTGCTT
TAGCTTCTGTCACCGCCGGCAACATGTTGTGATAGACAGTGAAATCAACA
GAAGAAAACAAAACGTAGGAGAAAGAGACACAGAAAGAGATCAGCAGAAA
TGGCTTTGTGCAGAGTACGCTCAGCTTCATCGACGCTCTTCAACAGGCTT
CTCTGTCCTTCCGTTCTCAACAACAACACTACTTATCGCTATCAGTCCTC
TGAAACCGAATTAGTTGGTGATCCTTCAAAACAAGAAAAACCAAAAAAAG
AAACTGTGCGTGATAAGATAATGAGACAGATGGCTCATGTTGATATAAAT
TCTCAAATTGGAAGTTGCATGCCACTTGCTTGTATGCGTATTGGGACCAT
CATTCACAACATTGAGGTAAACCCAGGACAAGGTGGCAAGCTAGTTAGAG
CTGCGGGGACGTCAGCCAAGATTTTGAAAGAACCCACTTCAAGCTTCTGT
TTAGTAAGACTACCTTCTGGTAATGAGAAACTGATTGACACTAGATGTCG
AGCCACCATTGGTACAGTGTCTAACCCAAGCCATGGAGCTAAGAAGCTTA
GGAAGGCTGGTCAGAGCCGTTGGTTGGGTCGAAGACCTGTGGTTAGAGGA
GTAGCCATGAATCCAGTTGATCATCCTCATGGTGGAGGTGAGGGACGAAG
CAAAAGTAGTGGTAACCATGGACGGTGTTCACTTACACCTTGGGGCAAGC
CTTGCAAG
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