CX069469

Overview
NameCX069469
Unique NameCX069469
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BURPS (50S ribosomal protein L2 OS=Burkholderia pseudomallei GN=rplB PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.720e-31
Identity = 72/161 (44.72%), Postives = 102/161 (63.35%), Query Frame = -3
Query:  175 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 657
            PK  TV  ++M   +  +   + G+ +P+  + +GT IH IE+ PG+G ++ R+AGTSA +L      +  VRL SG  + +   CRATIG V N  H  +++ KAG +RW G RP VRGVAMNP+DHPHGGGEGR+ +    GR  ++PWG P K G++T
Sbjct:  107 PKGVTVGQQLM---SGSEAPIRAGNTLPIRNIPVGTTIHCIEMLPGKGAQMARSAGTSAMLLARE-GLYAQVRLRSGEIRRVHIECRATIGEVGNEEHSLRQIGKAGANRWRGIRPTVRGVAMNPIDHPHGGGEGRTAA----GRDPVSPWGTPTK-GFRT 258          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BURP6 (50S ribosomal protein L2 OS=Burkholderia pseudomallei (strain 668) GN=rplB PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.720e-31
Identity = 72/161 (44.72%), Postives = 102/161 (63.35%), Query Frame = -3
Query:  175 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 657
            PK  TV  ++M   +  +   + G+ +P+  + +GT IH IE+ PG+G ++ R+AGTSA +L      +  VRL SG  + +   CRATIG V N  H  +++ KAG +RW G RP VRGVAMNP+DHPHGGGEGR+ +    GR  ++PWG P K G++T
Sbjct:  107 PKGVTVGQQLM---SGSEAPIRAGNTLPIRNIPVGTTIHCIEMLPGKGAQMARSAGTSAMLLARE-GLYAQVRLRSGEIRRVHIECRATIGEVGNEEHSLRQIGKAGANRWRGIRPTVRGVAMNPIDHPHGGGEGRTAA----GRDPVSPWGTPTK-GFRT 258          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BURP1 (50S ribosomal protein L2 OS=Burkholderia pseudomallei (strain 1710b) GN=rplB PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.720e-31
Identity = 72/161 (44.72%), Postives = 102/161 (63.35%), Query Frame = -3
Query:  175 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 657
            PK  TV  ++M   +  +   + G+ +P+  + +GT IH IE+ PG+G ++ R+AGTSA +L      +  VRL SG  + +   CRATIG V N  H  +++ KAG +RW G RP VRGVAMNP+DHPHGGGEGR+ +    GR  ++PWG P K G++T
Sbjct:  107 PKGVTVGQQLM---SGSEAPIRAGNTLPIRNIPVGTTIHCIEMLPGKGAQMARSAGTSAMLLARE-GLYAQVRLRSGEIRRVHIECRATIGEVGNEEHSLRQIGKAGANRWRGIRPTVRGVAMNPIDHPHGGGEGRTAA----GRDPVSPWGTPTK-GFRT 258          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BURP0 (50S ribosomal protein L2 OS=Burkholderia pseudomallei (strain 1106a) GN=rplB PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.720e-31
Identity = 72/161 (44.72%), Postives = 102/161 (63.35%), Query Frame = -3
Query:  175 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 657
            PK  TV  ++M   +  +   + G+ +P+  + +GT IH IE+ PG+G ++ R+AGTSA +L      +  VRL SG  + +   CRATIG V N  H  +++ KAG +RW G RP VRGVAMNP+DHPHGGGEGR+ +    GR  ++PWG P K G++T
Sbjct:  107 PKGVTVGQQLM---SGSEAPIRAGNTLPIRNIPVGTTIHCIEMLPGKGAQMARSAGTSAMLLARE-GLYAQVRLRSGEIRRVHIECRATIGEVGNEEHSLRQIGKAGANRWRGIRPTVRGVAMNPIDHPHGGGEGRTAA----GRDPVSPWGTPTK-GFRT 258          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BURMS (50S ribosomal protein L2 OS=Burkholderia mallei (strain SAVP1) GN=rplB PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.720e-31
Identity = 72/161 (44.72%), Postives = 102/161 (63.35%), Query Frame = -3
Query:  175 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 657
            PK  TV  ++M   +  +   + G+ +P+  + +GT IH IE+ PG+G ++ R+AGTSA +L      +  VRL SG  + +   CRATIG V N  H  +++ KAG +RW G RP VRGVAMNP+DHPHGGGEGR+ +    GR  ++PWG P K G++T
Sbjct:  107 PKGVTVGQQLM---SGSEAPIRAGNTLPIRNIPVGTTIHCIEMLPGKGAQMARSAGTSAMLLARE-GLYAQVRLRSGEIRRVHIECRATIGEVGNEEHSLRQIGKAGANRWRGIRPTVRGVAMNPIDHPHGGGEGRTAA----GRDPVSPWGTPTK-GFRT 258          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BURMA (50S ribosomal protein L2 OS=Burkholderia mallei GN=rplB PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.720e-31
Identity = 72/161 (44.72%), Postives = 102/161 (63.35%), Query Frame = -3
Query:  175 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 657
            PK  TV  ++M   +  +   + G+ +P+  + +GT IH IE+ PG+G ++ R+AGTSA +L      +  VRL SG  + +   CRATIG V N  H  +++ KAG +RW G RP VRGVAMNP+DHPHGGGEGR+ +    GR  ++PWG P K G++T
Sbjct:  107 PKGVTVGQQLM---SGSEAPIRAGNTLPIRNIPVGTTIHCIEMLPGKGAQMARSAGTSAMLLARE-GLYAQVRLRSGEIRRVHIECRATIGEVGNEEHSLRQIGKAGANRWRGIRPTVRGVAMNPIDHPHGGGEGRTAA----GRDPVSPWGTPTK-GFRT 258          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BURM9 (50S ribosomal protein L2 OS=Burkholderia mallei (strain NCTC 10229) GN=rplB PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.720e-31
Identity = 72/161 (44.72%), Postives = 102/161 (63.35%), Query Frame = -3
Query:  175 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 657
            PK  TV  ++M   +  +   + G+ +P+  + +GT IH IE+ PG+G ++ R+AGTSA +L      +  VRL SG  + +   CRATIG V N  H  +++ KAG +RW G RP VRGVAMNP+DHPHGGGEGR+ +    GR  ++PWG P K G++T
Sbjct:  107 PKGVTVGQQLM---SGSEAPIRAGNTLPIRNIPVGTTIHCIEMLPGKGAQMARSAGTSAMLLARE-GLYAQVRLRSGEIRRVHIECRATIGEVGNEEHSLRQIGKAGANRWRGIRPTVRGVAMNPIDHPHGGGEGRTAA----GRDPVSPWGTPTK-GFRT 258          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BURM7 (50S ribosomal protein L2 OS=Burkholderia mallei (strain NCTC 10247) GN=rplB PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.720e-31
Identity = 72/161 (44.72%), Postives = 102/161 (63.35%), Query Frame = -3
Query:  175 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 657
            PK  TV  ++M   +  +   + G+ +P+  + +GT IH IE+ PG+G ++ R+AGTSA +L      +  VRL SG  + +   CRATIG V N  H  +++ KAG +RW G RP VRGVAMNP+DHPHGGGEGR+ +    GR  ++PWG P K G++T
Sbjct:  107 PKGVTVGQQLM---SGSEAPIRAGNTLPIRNIPVGTTIHCIEMLPGKGAQMARSAGTSAMLLARE-GLYAQVRLRSGEIRRVHIECRATIGEVGNEEHSLRQIGKAGANRWRGIRPTVRGVAMNPIDHPHGGGEGRTAA----GRDPVSPWGTPTK-GFRT 258          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BURM1 (50S ribosomal protein L2 OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=rplB PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.720e-31
Identity = 72/161 (44.72%), Postives = 102/161 (63.35%), Query Frame = -3
Query:  175 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 657
            PK  TV  ++M   +  +   + G+ +P+  + +GT IH IE+ PG+G ++ R+AGTSA +L      +  VRL SG  + +   CRATIG V N  H  +++ KAG +RW G RP VRGVAMNP+DHPHGGGEGR+ +    GR  ++PWG P K G++T
Sbjct:  107 PKGVTVGQQLM---SGSEAPIRAGNTLPIRNIPVGTTIHCIEMLPGKGAQMARSAGTSAMLLARE-GVYAQVRLRSGEIRRVHIECRATIGEVGNEEHSLRQIGKAGANRWRGIRPTVRGVAMNPIDHPHGGGEGRTAA----GRDPVSPWGTPTK-GFRT 258          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RK2_SINAL (50S ribosomal protein L2, chloroplastic OS=Sinapis alba GN=rpl2 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.720e-31
Identity = 71/154 (46.10%), Postives = 96/154 (62.34%), Query Frame = -3
Query:  196 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 657
            P+   + D I+   +  ++  ++G+ +PL  M +GT IHNIE+  G+GG+L RAAG  AK++ +   S  L +LPSG  +LI   C AT+G V N     K L +AG   WLG+RPVVRGV MNPVDHPHGGGEGR+       +  +TPWG P
Sbjct:  105 PRGAIIGDTIV---SGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL-KLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIG---RKKPVTPWGYP 251          
The following BLAST results are available for this feature:
BLAST of CX069469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_BURPS3.720e-3144.7250S ribosomal protein L2 OS=Burkholderia pseudomal... [more]
RL2_BURP63.720e-3144.7250S ribosomal protein L2 OS=Burkholderia pseudomal... [more]
RL2_BURP13.720e-3144.7250S ribosomal protein L2 OS=Burkholderia pseudomal... [more]
RL2_BURP03.720e-3144.7250S ribosomal protein L2 OS=Burkholderia pseudomal... [more]
RL2_BURMS3.720e-3144.7250S ribosomal protein L2 OS=Burkholderia mallei (s... [more]
RL2_BURMA3.720e-3144.7250S ribosomal protein L2 OS=Burkholderia mallei GN... [more]
RL2_BURM93.720e-3144.7250S ribosomal protein L2 OS=Burkholderia mallei (s... [more]
RL2_BURM73.720e-3144.7250S ribosomal protein L2 OS=Burkholderia mallei (s... [more]
RL2_BURM13.720e-3144.7250S ribosomal protein L2 OS=Burkholderia multivora... [more]
RK2_SINAL3.720e-3146.1050S ribosomal protein L2, chloroplastic OS=Sinapis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10F07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F07-K14-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069469 ID=CX069469; Name=CX069469; organism=Citrus sinensis; type=EST; length=887bp
CTTTTTTTTTAAGTTCAATCGGAAGTTAAACTTCAGTTTCATTATTGATC
GGTTAAAACTGGATAAAAACTAACTGCAAAGAAAACAAAATAATGTAACA
ATACTAAAAATGCTCACTAGCACAAAAGGACAATATTATCAGAAGGCTAA
TTTCTTTTTCTTCTTAGGAGATGCAGTTTTATACCCAGACTTGCAAGGCT
TGCCCCAAGGTGTAAGTGAACACCGTCCATGGTTACCACTACTTTTGCTT
CGTCCCTCACCTCCACCATGAGGATGATCAACTGGATTCATGGCTACTCC
TCTAACCACAGGTCTTCGACCCAACCAACGGCTCTGACCAGCCTTCCTAA
GCTTCTTAGCTCCATGGCTTGGGTTAGACACTGTACCAATGGTGGCTCGA
CATCTAGTGTCAATCAGTTTCTCATTACCAGAAGGTAGTCTTACTAAACA
GAAGCTTGAAGTGGGTTCTTTCAAAATCTTGGCTGACGTCCCCGCAGCTC
TAACTAGCTTGCCACCTTGTCCTGGGTTTACCTCAATGTTGTGAATGATG
GTCCCAATACGCATACAAGCAAGTGGCATGCAACTTCCAATTTGAGAATT
TATATCAACATGAGCCATCTGTCTCATTATCTTATCACGCACAGTTTCTT
TTTTTGGTTTTTCTTGTTTTGAAGGATCACCAACTAATTCGGTTTCAGAG
GACTGATAGCGATAAGTAGTGTTGTTGTTGAGAACGGAAGGACAGAGAAG
CCTGTTGAAGAGCGTCGATGAAGCTGAGCGTACTCTGCACAAAGCCATTT
CTGCTGATCTCTTTCTGTGTCTCTTTCTCCTACGTTTTGTTTTCTTCTGT
TGATTTCACTGTCTATCACAACATGTTGCCGGCGGTG
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