CX069469

Overview
NameCX069469
Unique NameCX069469
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RK2_ARATH (50S ribosomal protein L2, chloroplastic OS=Arabidopsis thaliana GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.720e-31
Identity = 71/154 (46.10%), Postives = 96/154 (62.34%), Query Frame = -3
Query:  196 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 657
            P+   + D I+   +  ++  ++G+ +PL  M +GT IHNIE+  G+GG+L RAAG  AK++ +   S  L +LPSG  +LI   C AT+G V N     K L +AG   WLG+RPVVRGV MNPVDHPHGGGEGR+       +  +TPWG P
Sbjct:  105 PRGAIIGDTIV---SGTEVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATL-KLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIG---RKKPVTPWGYP 251          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RK2_ARAHI (50S ribosomal protein L2, chloroplastic OS=Arabis hirsuta GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.720e-31
Identity = 71/154 (46.10%), Postives = 96/154 (62.34%), Query Frame = -3
Query:  196 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 657
            P+   + D I+   +  ++  ++G+ +PL  M +GT IHNIE+  G+GG+L RAAG  AK++ +   S  L +LPSG  +LI   C AT+G V N     K L +AG   WLG+RPVVRGV MNPVDHPHGGGEGR+       +  +TPWG P
Sbjct:  105 PRGAIIGDTIV---SGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL-KLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIG---RKKPVTPWGYP 251          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RK2_ADICA (50S ribosomal protein L2, chloroplastic OS=Adiantum capillus-veneris GN=rpl2 PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 3.720e-31
Identity = 70/130 (53.85%), Postives = 89/130 (68.46%), Query Frame = -3
Query:  199 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGK 588
            G+ +PL  M +GTIIHNIE+  G+G +LVR+AGT AK++ +       +RLPSG  +L+   C A++G V N     K L+KAG  RWLGRRP VRG AMNPVDHPHGGGEGR+ S G   +  LTPWG+
Sbjct:  124 GNALPLTKMPLGTIIHNIELKSGRGAQLVRSAGTVAKVIAKE-GRLATLRLPSGEIRLVPRDCLASVGRVGNVDISNKGLKKAGSKRWLGRRPKVRGSAMNPVDHPHGGGEGRT-SIGR--KKPLTPWGR 249          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RK2B_LIRTU (50S ribosomal protein L2-B, chloroplastic OS=Liriodendron tulipifera GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.720e-31
Identity = 72/154 (46.75%), Postives = 94/154 (61.04%), Query Frame = -3
Query:  196 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 657
            P+   + D I+   +  ++   +G+ +PL  M +GT IHNIE+  G+GG+L RAAG  AK++ +   S  L RLPSG  +LI   C AT+G V N     K L +AG   WLG+RPVVRGV MNPVDHPHGGGEGR+       +   TPWG P
Sbjct:  105 PRGAIIGDTIV---SGTEVPISMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL-RLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIG---RKKPTTPWGYP 251          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_WOLSU (50S ribosomal protein L2 OS=Wolinella succinogenes GN=rplB PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.858e-31
Identity = 75/162 (46.30%), Postives = 101/162 (62.35%), Query Frame = -3
Query:  175 KPKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 660
            +P    V D ++     +DI +  G  M L  + IGTIIHNIE++PG GG+L R+AG SA+I+      + ++R+PSG  + I   C ATIGTV N       + KAG++R  G RP  RG AMNPVDHPHGGGEG++ SSG+     ++PWG P K G+KT
Sbjct:  106 QPTGLAVGDLVISAEGGLDIKT--GYAMKLKNIPIGTIIHNIELHPGAGGQLARSAGASAQIMGRE-GKYTIIRMPSGEMRYILEECMATIGTVGNADFANISIGKAGRNRHRGIRPQTRGAAMNPVDHPHGGGEGKTGSSGH----PVSPWGMPAK-GFKT 259          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_STACT (50S ribosomal protein L2 OS=Staphylococcus carnosus (strain TM300) GN=rplB PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.858e-31
Identity = 69/132 (52.27%), Postives = 91/132 (68.94%), Query Frame = -3
Query:  196 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKP 588
            G+ +PLA + +GT IHNIE+ PG+GG++ R+AG SA++L +    + LVRL SG  ++I + CRAT+G V N  H    + KAG+SRW G RP VRG  MNP DHPHGGGEGR+      GR S ++PWGKP
Sbjct:  127 GNALPLANIPVGTTIHNIELKPGRGGQIARSAGASAQVLGKE-GKYVLVRLRSGEVRMILSTCRATVGQVGNLQHELVNVGKAGRSRWKGIRPTVRGSVMNPNDHPHGGGEGRAPI----GRPSPMSPWGKP 253          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_SHEB9 (50S ribosomal protein L2 OS=Shewanella baltica (strain OS195) GN=rplB PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.858e-31
Identity = 66/140 (47.14%), Postives = 90/140 (64.29%), Query Frame = -3
Query:  169 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 588
            G+ MPL  + +G+++H +E+ PG+G ++ R+AG   +++     ++  +RL SG  + +   CRAT G V N  H  ++L KAG  RW G RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWG P K GYKT S
Sbjct:  127 GNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVARD-GAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAGAKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGVPTK-GYKTRS 260          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_SHEB8 (50S ribosomal protein L2 OS=Shewanella baltica (strain OS185) GN=rplB PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.858e-31
Identity = 66/140 (47.14%), Postives = 90/140 (64.29%), Query Frame = -3
Query:  169 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 588
            G+ MPL  + +G+++H +E+ PG+G ++ R+AG   +++     ++  +RL SG  + +   CRAT G V N  H  ++L KAG  RW G RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWG P K GYKT S
Sbjct:  127 GNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVARD-GAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAGAKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGVPTK-GYKTRS 260          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_SHEB5 (50S ribosomal protein L2 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rplB PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.858e-31
Identity = 66/140 (47.14%), Postives = 90/140 (64.29%), Query Frame = -3
Query:  169 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 588
            G+ MPL  + +G+++H +E+ PG+G ++ R+AG   +++     ++  +RL SG  + +   CRAT G V N  H  ++L KAG  RW G RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWG P K GYKT S
Sbjct:  127 GNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVARD-GAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAGAKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGVPTK-GYKTRS 260          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_SHEB2 (50S ribosomal protein L2 OS=Shewanella baltica (strain OS223) GN=rplB PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.858e-31
Identity = 66/140 (47.14%), Postives = 90/140 (64.29%), Query Frame = -3
Query:  169 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 588
            G+ MPL  + +G+++H +E+ PG+G ++ R+AG   +++     ++  +RL SG  + +   CRAT G V N  H  ++L KAG  RW G RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWG P K GYKT S
Sbjct:  127 GNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVARD-GAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAGAKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGVPTK-GYKTRS 260          
The following BLAST results are available for this feature:
BLAST of CX069469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_ARATH3.720e-3146.1050S ribosomal protein L2, chloroplastic OS=Arabido... [more]
RK2_ARAHI3.720e-3146.1050S ribosomal protein L2, chloroplastic OS=Arabis ... [more]
RK2_ADICA3.720e-3153.8550S ribosomal protein L2, chloroplastic OS=Adiantu... [more]
RK2B_LIRTU3.720e-3146.7550S ribosomal protein L2-B, chloroplastic OS=Lirio... [more]
RL2_WOLSU4.858e-3146.3050S ribosomal protein L2 OS=Wolinella succinogenes... [more]
RL2_STACT4.858e-3152.2750S ribosomal protein L2 OS=Staphylococcus carnosu... [more]
RL2_SHEB94.858e-3147.1450S ribosomal protein L2 OS=Shewanella baltica (st... [more]
RL2_SHEB84.858e-3147.1450S ribosomal protein L2 OS=Shewanella baltica (st... [more]
RL2_SHEB54.858e-3147.1450S ribosomal protein L2 OS=Shewanella baltica (st... [more]
RL2_SHEB24.858e-3147.1450S ribosomal protein L2 OS=Shewanella baltica (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10F07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F07-K14-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069469 ID=CX069469; Name=CX069469; organism=Citrus sinensis; type=EST; length=887bp
CTTTTTTTTTAAGTTCAATCGGAAGTTAAACTTCAGTTTCATTATTGATC
GGTTAAAACTGGATAAAAACTAACTGCAAAGAAAACAAAATAATGTAACA
ATACTAAAAATGCTCACTAGCACAAAAGGACAATATTATCAGAAGGCTAA
TTTCTTTTTCTTCTTAGGAGATGCAGTTTTATACCCAGACTTGCAAGGCT
TGCCCCAAGGTGTAAGTGAACACCGTCCATGGTTACCACTACTTTTGCTT
CGTCCCTCACCTCCACCATGAGGATGATCAACTGGATTCATGGCTACTCC
TCTAACCACAGGTCTTCGACCCAACCAACGGCTCTGACCAGCCTTCCTAA
GCTTCTTAGCTCCATGGCTTGGGTTAGACACTGTACCAATGGTGGCTCGA
CATCTAGTGTCAATCAGTTTCTCATTACCAGAAGGTAGTCTTACTAAACA
GAAGCTTGAAGTGGGTTCTTTCAAAATCTTGGCTGACGTCCCCGCAGCTC
TAACTAGCTTGCCACCTTGTCCTGGGTTTACCTCAATGTTGTGAATGATG
GTCCCAATACGCATACAAGCAAGTGGCATGCAACTTCCAATTTGAGAATT
TATATCAACATGAGCCATCTGTCTCATTATCTTATCACGCACAGTTTCTT
TTTTTGGTTTTTCTTGTTTTGAAGGATCACCAACTAATTCGGTTTCAGAG
GACTGATAGCGATAAGTAGTGTTGTTGTTGAGAACGGAAGGACAGAGAAG
CCTGTTGAAGAGCGTCGATGAAGCTGAGCGTACTCTGCACAAAGCCATTT
CTGCTGATCTCTTTCTGTGTCTCTTTCTCCTACGTTTTGTTTTCTTCTGT
TGATTTCACTGTCTATCACAACATGTTGCCGGCGGTG
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