CX069469
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RK2_ARATH (50S ribosomal protein L2, chloroplastic OS=Arabidopsis thaliana GN=rpl2-A PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 3.720e-31 Identity = 71/154 (46.10%), Postives = 96/154 (62.34%), Query Frame = -3 Query: 196 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 657 P+ + D I+ + ++ ++G+ +PL M +GT IHNIE+ G+GG+L RAAG AK++ + S L +LPSG +LI C AT+G V N K L +AG WLG+RPVVRGV MNPVDHPHGGGEGR+ + +TPWG P Sbjct: 105 PRGAIIGDTIV---SGTEVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATL-KLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIG---RKKPVTPWGYP 251
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RK2_ARAHI (50S ribosomal protein L2, chloroplastic OS=Arabis hirsuta GN=rpl2-A PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 3.720e-31 Identity = 71/154 (46.10%), Postives = 96/154 (62.34%), Query Frame = -3 Query: 196 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 657 P+ + D I+ + ++ ++G+ +PL M +GT IHNIE+ G+GG+L RAAG AK++ + S L +LPSG +LI C AT+G V N K L +AG WLG+RPVVRGV MNPVDHPHGGGEGR+ + +TPWG P Sbjct: 105 PRGAIIGDTIV---SGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL-KLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIG---RKKPVTPWGYP 251
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RK2_ADICA (50S ribosomal protein L2, chloroplastic OS=Adiantum capillus-veneris GN=rpl2 PE=2 SV=2) HSP 1 Score: 135.576 bits (340), Expect = 3.720e-31 Identity = 70/130 (53.85%), Postives = 89/130 (68.46%), Query Frame = -3 Query: 199 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGK 588 G+ +PL M +GTIIHNIE+ G+G +LVR+AGT AK++ + +RLPSG +L+ C A++G V N K L+KAG RWLGRRP VRG AMNPVDHPHGGGEGR+ S G + LTPWG+ Sbjct: 124 GNALPLTKMPLGTIIHNIELKSGRGAQLVRSAGTVAKVIAKE-GRLATLRLPSGEIRLVPRDCLASVGRVGNVDISNKGLKKAGSKRWLGRRPKVRGSAMNPVDHPHGGGEGRT-SIGR--KKPLTPWGR 249
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RK2B_LIRTU (50S ribosomal protein L2-B, chloroplastic OS=Liriodendron tulipifera GN=rpl2-B PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 3.720e-31 Identity = 72/154 (46.75%), Postives = 94/154 (61.04%), Query Frame = -3 Query: 196 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 657 P+ + D I+ + ++ +G+ +PL M +GT IHNIE+ G+GG+L RAAG AK++ + S L RLPSG +LI C AT+G V N K L +AG WLG+RPVVRGV MNPVDHPHGGGEGR+ + TPWG P Sbjct: 105 PRGAIIGDTIV---SGTEVPISMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL-RLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIG---RKKPTTPWGYP 251
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_WOLSU (50S ribosomal protein L2 OS=Wolinella succinogenes GN=rplB PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 4.858e-31 Identity = 75/162 (46.30%), Postives = 101/162 (62.35%), Query Frame = -3 Query: 175 KPKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 660 +P V D ++ +DI + G M L + IGTIIHNIE++PG GG+L R+AG SA+I+ + ++R+PSG + I C ATIGTV N + KAG++R G RP RG AMNPVDHPHGGGEG++ SSG+ ++PWG P K G+KT Sbjct: 106 QPTGLAVGDLVISAEGGLDIKT--GYAMKLKNIPIGTIIHNIELHPGAGGQLARSAGASAQIMGRE-GKYTIIRMPSGEMRYILEECMATIGTVGNADFANISIGKAGRNRHRGIRPQTRGAAMNPVDHPHGGGEGKTGSSGH----PVSPWGMPAK-GFKT 259
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_STACT (50S ribosomal protein L2 OS=Staphylococcus carnosus (strain TM300) GN=rplB PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 4.858e-31 Identity = 69/132 (52.27%), Postives = 91/132 (68.94%), Query Frame = -3 Query: 196 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKP 588 G+ +PLA + +GT IHNIE+ PG+GG++ R+AG SA++L + + LVRL SG ++I + CRAT+G V N H + KAG+SRW G RP VRG MNP DHPHGGGEGR+ GR S ++PWGKP Sbjct: 127 GNALPLANIPVGTTIHNIELKPGRGGQIARSAGASAQVLGKE-GKYVLVRLRSGEVRMILSTCRATVGQVGNLQHELVNVGKAGRSRWKGIRPTVRGSVMNPNDHPHGGGEGRAPI----GRPSPMSPWGKP 253
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_SHEB9 (50S ribosomal protein L2 OS=Shewanella baltica (strain OS195) GN=rplB PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 4.858e-31 Identity = 66/140 (47.14%), Postives = 90/140 (64.29%), Query Frame = -3 Query: 169 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 588 G+ MPL + +G+++H +E+ PG+G ++ R+AG +++ ++ +RL SG + + CRAT G V N H ++L KAG RW G RP VRGVAMNPVDHPHGGGEGR+ GR +TPWG P K GYKT S Sbjct: 127 GNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVARD-GAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAGAKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGVPTK-GYKTRS 260
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_SHEB8 (50S ribosomal protein L2 OS=Shewanella baltica (strain OS185) GN=rplB PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 4.858e-31 Identity = 66/140 (47.14%), Postives = 90/140 (64.29%), Query Frame = -3 Query: 169 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 588 G+ MPL + +G+++H +E+ PG+G ++ R+AG +++ ++ +RL SG + + CRAT G V N H ++L KAG RW G RP VRGVAMNPVDHPHGGGEGR+ GR +TPWG P K GYKT S Sbjct: 127 GNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVARD-GAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAGAKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGVPTK-GYKTRS 260
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_SHEB5 (50S ribosomal protein L2 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rplB PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 4.858e-31 Identity = 66/140 (47.14%), Postives = 90/140 (64.29%), Query Frame = -3 Query: 169 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 588 G+ MPL + +G+++H +E+ PG+G ++ R+AG +++ ++ +RL SG + + CRAT G V N H ++L KAG RW G RP VRGVAMNPVDHPHGGGEGR+ GR +TPWG P K GYKT S Sbjct: 127 GNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVARD-GAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAGAKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGVPTK-GYKTRS 260
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_SHEB2 (50S ribosomal protein L2 OS=Shewanella baltica (strain OS223) GN=rplB PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 4.858e-31 Identity = 66/140 (47.14%), Postives = 90/140 (64.29%), Query Frame = -3 Query: 169 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 588 G+ MPL + +G+++H +E+ PG+G ++ R+AG +++ ++ +RL SG + + CRAT G V N H ++L KAG RW G RP VRGVAMNPVDHPHGGGEGR+ GR +TPWG P K GYKT S Sbjct: 127 GNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVARD-GAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAGAKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGVPTK-GYKTRS 260 The following BLAST results are available for this feature:
BLAST of CX069469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069469 ID=CX069469; Name=CX069469; organism=Citrus sinensis; type=EST; length=887bpback to top |