CX069469

Overview
NameCX069469
Unique NameCX069469
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_RHOPT (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.556e-36
Identity = 82/163 (50.31%), Postives = 108/163 (66.26%), Query Frame = -3
Query:  169 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 657
            P++  V D ++   A+VD+    G+ MPL  M IGTI+HN+E+  G+GG+L R+AGT A+I+      + ++R+ SG ++LI  RC A IG VSNP H    + KAG+ RWLGRRP  RGV MNP+DHPHGGGEGR+      GR  +TPWGKP K G KT S
Sbjct:  107 PQRLAVGDTVIAG-AYVDVKP--GNVMPLGNMPIGTIVHNVELKIGKGGQLARSAGTYAQIVGRD-HDYVILRMNSGEQRLIHGRCIAAIGAVSNPDHMNISIGKAGRKRWLGRRPHNRGVVMNPIDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKTRS 260          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_RHOPA (50S ribosomal protein L2 OS=Rhodopseudomonas palustris GN=rplB PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.556e-36
Identity = 82/163 (50.31%), Postives = 108/163 (66.26%), Query Frame = -3
Query:  169 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 657
            P++  V D ++   A+VD+    G+ MPL  M IGTI+HN+E+  G+GG+L R+AGT A+I+      + ++R+ SG ++LI  RC A IG VSNP H    + KAG+ RWLGRRP  RGV MNP+DHPHGGGEGR+      GR  +TPWGKP K G KT S
Sbjct:  107 PQRLAVGDTVIAG-AYVDVKP--GNVMPLGNMPIGTIVHNVELKIGKGGQLARSAGTYAQIVGRD-HDYVILRMNSGEQRLIHGRCIAAIGAVSNPDHMNISIGKAGRKRWLGRRPHNRGVVMNPIDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKTRS 260          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_NITWN (50S ribosomal protein L2 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplB PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.556e-36
Identity = 79/163 (48.47%), Postives = 108/163 (66.26%), Query Frame = -3
Query:  169 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 657
            P++  V D ++    +VD+    G+ MPL  M +GTI+HN+E+  G+GG+L R+AGT A+I+      + ++RL SG ++L+  RCR  IG VSNP H    + KAG++RW+GRRP  RGV MNP+DHPHGGGEGR+      GR  +TPWGKP K G KT S
Sbjct:  107 PQRMAVGDTVVAGN-YVDVKP--GNVMPLGNMPVGTIVHNVEMKIGKGGQLARSAGTYAQIVGRD-QDYVILRLNSGEQRLVHGRCRGAIGAVSNPDHMNTSVGKAGRTRWMGRRPHNRGVVMNPIDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKTRS 260          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_GRABC (50S ribosomal protein L2 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rplB PE=3 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 8.556e-36
Identity = 74/138 (53.62%), Postives = 97/138 (70.29%), Query Frame = -3
Query:  175 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 588
            G+ MPL  + +GTIIHNIE+ PG GGK+ R+AGT A+++ +  + +  ++L SG  +++   C AT+G VSNP +    + KAG+SRWLGRRP  RGV MNPVDHPHGGGEGR+      GR  +TPWGKP K GYKT
Sbjct:  127 GNAMPLGAIPVGTIIHNIEMKPGAGGKIARSAGTYAQLVGKD-AGYAQIKLMSGELRVVRAECYATVGAVSNPDNSNIHIGKAGRSRWLGRRPHNRGVVMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GYKT 258          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BARHE (50S ribosomal protein L2 OS=Bartonella henselae GN=rplB PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.556e-36
Identity = 80/163 (49.08%), Postives = 109/163 (66.87%), Query Frame = -3
Query:  169 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 657
            P++  V D ++   ++VDI    G+ MPL  M +GTIIHN+E+ PG+GG++ R+AG  A+++        ++RL SG ++L+ + C AT+G VSNP H      KAG+SRW GRRP VRGVAMNPVDHPHGGGEGR+      GR  ++PWGKP K G +T S
Sbjct:  107 PQRLDVGDSVIAG-SNVDIKP--GNAMPLGNMPVGTIIHNVEMKPGKGGQIARSAGAYAQLVGRD-QGMAILRLNSGEQRLVSSGCFATVGAVSNPDHANINDGKAGRSRWRGRRPHVRGVAMNPVDHPHGGGEGRTSG----GRHPVSPWGKPTK-GKRTRS 260          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BARBK (50S ribosomal protein L2 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rplB1 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.556e-36
Identity = 76/163 (46.63%), Postives = 109/163 (66.87%), Query Frame = -3
Query:  169 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 657
            P++  V D ++   A + ++ + G+ MPL  M +G I+HN+E+ PG+GG++ R+AG  A+++        ++RL SG ++L+ + C AT+G VSNP HG     KAG+SRW G+RP VRGVAMNPVDHPHGGGEGR+      GR  ++PWGKP K G +T S
Sbjct:  107 PQRLDVGDTVV---AGLSVDVKPGNAMPLGNMPVGAIVHNVEMKPGKGGQIARSAGAYAQLVGRD-QGMAILRLNSGEQRLVSSNCFATVGAVSNPDHGNINDGKAGRSRWRGKRPHVRGVAMNPVDHPHGGGEGRTSG----GRHPVSPWGKPTK-GKRTRS 260          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_NITHX (50S ribosomal protein L2 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rplB PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.117e-35
Identity = 79/163 (48.47%), Postives = 108/163 (66.26%), Query Frame = -3
Query:  169 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 657
            P++  V D ++    +VD+    G+ MPL  M +GTI+HN+E+  G+GG+L R+AGT A+I+      + ++RL SG ++L+  RCR  IG VSNP H    + KAG++RW+GRRP  RGV MNP+DHPHGGGEGR+      GR  +TPWGKP K G KT S
Sbjct:  107 PQRLAVGDTVVAGN-YVDVKP--GNVMPLGNMPVGTIVHNVEMKIGKGGQLARSAGTYAQIVGRD-HDYVILRLNSGEQRLVHGRCRGAIGAVSNPDHMNTSIGKAGRTRWMGRRPHNRGVVMNPIDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKTRS 260          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_GEOSW (50S ribosomal protein L2 OS=Geobacillus sp. (strain WCH70) GN=rplB PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.117e-35
Identity = 78/152 (51.32%), Postives = 105/152 (69.08%), Query Frame = -3
Query:  175 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 627
            M  M+  D + ++G+ +PL  + +GT +HNIE+ PG+GG+LVRAAGTSA++L +    + +VRL SG  ++I   CRAT+G V N  H   K+ KAG++RWLG RP VRG  MNPVDHPHGGGEG++      GR S +TPWGKP   G+KT
Sbjct:  114 MEIMSGPDADIKVGNALPLENIPVGTFVHNIELKPGRGGQLVRAAGTSAQVLGKE-GKYVIVRLASGEVRMILGACRATVGEVGNEQHELVKIGKAGRARWLGIRPTVRGSVMNPVDHPHGGGEGKAPI----GRKSPMTPWGKP-TLGFKT 259          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BEII9 (50S ribosomal protein L2 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplB PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.117e-35
Identity = 82/161 (50.93%), Postives = 107/161 (66.46%), Query Frame = -3
Query:  175 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 657
            P+K  V D+++     VD+    G+ M LA M +GTI+HNIE+  G+G  +VR+AGT A+++      + +VRL SG ++LI  +C AT+G VSNP H    + KAG+SRWLGRRP  RGV MNPVDHPHGGGEGR+      GR  +TPWGKP K G KT
Sbjct:  107 PQKLAVGDEVISGQ-QVDVKP--GNAMALANMPVGTIVHNIEMKIGKGAAMVRSAGTYAQVVGRD-QGYVIVRLNSGEQRLIHGQCFATVGAVSNPDHMNASIGKAGRSRWLGRRPHNRGVTMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKT 258          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_AGRRK (50S ribosomal protein L2 OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=rplB PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.117e-35
Identity = 79/171 (46.20%), Postives = 109/171 (63.74%), Query Frame = -3
Query:  169 GDPSKQEKPKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 681
            GD +    P++    DK++     VD+    G+ MPL  + +G+IIHN+E+ PG+GG++ R+AG  A+++        ++RL SG ++L+   C ATIG VSNP HG     KAG+SRW G++P VRGV MNPVDHPHGGGEGR+      GR  +TPWGKP K G +T S
Sbjct:   99 GDQAYILAPQRLAAGDKVIASEKAVDVKP--GNTMPLQFIPVGSIIHNVEMKPGKGGQIARSAGGYAQLVGRD-QGMAILRLNSGEQRLVHGTCLATIGAVSNPDHGNINDGKAGRSRWRGKKPHVRGVVMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKRTRS 261          
The following BLAST results are available for this feature:
BLAST of CX069469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_RHOPT8.556e-3650.3150S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]
RL2_RHOPA8.556e-3650.3150S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]
RL2_NITWN8.556e-3648.4750S ribosomal protein L2 OS=Nitrobacter winogradsk... [more]
RL2_GRABC8.556e-3653.6250S ribosomal protein L2 OS=Granulibacter bethesde... [more]
RL2_BARHE8.556e-3649.0850S ribosomal protein L2 OS=Bartonella henselae GN... [more]
RL2_BARBK8.556e-3646.6350S ribosomal protein L2 OS=Bartonella bacilliform... [more]
RL2_NITHX1.117e-3548.4750S ribosomal protein L2 OS=Nitrobacter hamburgens... [more]
RL2_GEOSW1.117e-3551.3250S ribosomal protein L2 OS=Geobacillus sp. (strai... [more]
RL2_BEII91.117e-3550.9350S ribosomal protein L2 OS=Beijerinckia indica su... [more]
RL2_AGRRK1.117e-3546.2050S ribosomal protein L2 OS=Agrobacterium radiobac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_10F07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F07-K14-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069469 ID=CX069469; Name=CX069469; organism=Citrus sinensis; type=EST; length=887bp
CTTTTTTTTTAAGTTCAATCGGAAGTTAAACTTCAGTTTCATTATTGATC
GGTTAAAACTGGATAAAAACTAACTGCAAAGAAAACAAAATAATGTAACA
ATACTAAAAATGCTCACTAGCACAAAAGGACAATATTATCAGAAGGCTAA
TTTCTTTTTCTTCTTAGGAGATGCAGTTTTATACCCAGACTTGCAAGGCT
TGCCCCAAGGTGTAAGTGAACACCGTCCATGGTTACCACTACTTTTGCTT
CGTCCCTCACCTCCACCATGAGGATGATCAACTGGATTCATGGCTACTCC
TCTAACCACAGGTCTTCGACCCAACCAACGGCTCTGACCAGCCTTCCTAA
GCTTCTTAGCTCCATGGCTTGGGTTAGACACTGTACCAATGGTGGCTCGA
CATCTAGTGTCAATCAGTTTCTCATTACCAGAAGGTAGTCTTACTAAACA
GAAGCTTGAAGTGGGTTCTTTCAAAATCTTGGCTGACGTCCCCGCAGCTC
TAACTAGCTTGCCACCTTGTCCTGGGTTTACCTCAATGTTGTGAATGATG
GTCCCAATACGCATACAAGCAAGTGGCATGCAACTTCCAATTTGAGAATT
TATATCAACATGAGCCATCTGTCTCATTATCTTATCACGCACAGTTTCTT
TTTTTGGTTTTTCTTGTTTTGAAGGATCACCAACTAATTCGGTTTCAGAG
GACTGATAGCGATAAGTAGTGTTGTTGTTGAGAACGGAAGGACAGAGAAG
CCTGTTGAAGAGCGTCGATGAAGCTGAGCGTACTCTGCACAAAGCCATTT
CTGCTGATCTCTTTCTGTGTCTCTTTCTCCTACGTTTTGTTTTCTTCTGT
TGATTTCACTGTCTATCACAACATGTTGCCGGCGGTG
back to top