CX069469
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_RHOPT (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rplB PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 8.556e-36 Identity = 82/163 (50.31%), Postives = 108/163 (66.26%), Query Frame = -3 Query: 169 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 657 P++ V D ++ A+VD+ G+ MPL M IGTI+HN+E+ G+GG+L R+AGT A+I+ + ++R+ SG ++LI RC A IG VSNP H + KAG+ RWLGRRP RGV MNP+DHPHGGGEGR+ GR +TPWGKP K G KT S Sbjct: 107 PQRLAVGDTVIAG-AYVDVKP--GNVMPLGNMPIGTIVHNVELKIGKGGQLARSAGTYAQIVGRD-HDYVILRMNSGEQRLIHGRCIAAIGAVSNPDHMNISIGKAGRKRWLGRRPHNRGVVMNPIDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKTRS 260
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_RHOPA (50S ribosomal protein L2 OS=Rhodopseudomonas palustris GN=rplB PE=1 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 8.556e-36 Identity = 82/163 (50.31%), Postives = 108/163 (66.26%), Query Frame = -3 Query: 169 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 657 P++ V D ++ A+VD+ G+ MPL M IGTI+HN+E+ G+GG+L R+AGT A+I+ + ++R+ SG ++LI RC A IG VSNP H + KAG+ RWLGRRP RGV MNP+DHPHGGGEGR+ GR +TPWGKP K G KT S Sbjct: 107 PQRLAVGDTVIAG-AYVDVKP--GNVMPLGNMPIGTIVHNVELKIGKGGQLARSAGTYAQIVGRD-HDYVILRMNSGEQRLIHGRCIAAIGAVSNPDHMNISIGKAGRKRWLGRRPHNRGVVMNPIDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKTRS 260
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_NITWN (50S ribosomal protein L2 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplB PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 8.556e-36 Identity = 79/163 (48.47%), Postives = 108/163 (66.26%), Query Frame = -3 Query: 169 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 657 P++ V D ++ +VD+ G+ MPL M +GTI+HN+E+ G+GG+L R+AGT A+I+ + ++RL SG ++L+ RCR IG VSNP H + KAG++RW+GRRP RGV MNP+DHPHGGGEGR+ GR +TPWGKP K G KT S Sbjct: 107 PQRMAVGDTVVAGN-YVDVKP--GNVMPLGNMPVGTIVHNVEMKIGKGGQLARSAGTYAQIVGRD-QDYVILRLNSGEQRLVHGRCRGAIGAVSNPDHMNTSVGKAGRTRWMGRRPHNRGVVMNPIDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKTRS 260
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_GRABC (50S ribosomal protein L2 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rplB PE=3 SV=2) HSP 1 Score: 150.984 bits (380), Expect = 8.556e-36 Identity = 74/138 (53.62%), Postives = 97/138 (70.29%), Query Frame = -3 Query: 175 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 588 G+ MPL + +GTIIHNIE+ PG GGK+ R+AGT A+++ + + + ++L SG +++ C AT+G VSNP + + KAG+SRWLGRRP RGV MNPVDHPHGGGEGR+ GR +TPWGKP K GYKT Sbjct: 127 GNAMPLGAIPVGTIIHNIEMKPGAGGKIARSAGTYAQLVGKD-AGYAQIKLMSGELRVVRAECYATVGAVSNPDNSNIHIGKAGRSRWLGRRPHNRGVVMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GYKT 258
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BARHE (50S ribosomal protein L2 OS=Bartonella henselae GN=rplB PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 8.556e-36 Identity = 80/163 (49.08%), Postives = 109/163 (66.87%), Query Frame = -3 Query: 169 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 657 P++ V D ++ ++VDI G+ MPL M +GTIIHN+E+ PG+GG++ R+AG A+++ ++RL SG ++L+ + C AT+G VSNP H KAG+SRW GRRP VRGVAMNPVDHPHGGGEGR+ GR ++PWGKP K G +T S Sbjct: 107 PQRLDVGDSVIAG-SNVDIKP--GNAMPLGNMPVGTIIHNVEMKPGKGGQIARSAGAYAQLVGRD-QGMAILRLNSGEQRLVSSGCFATVGAVSNPDHANINDGKAGRSRWRGRRPHVRGVAMNPVDHPHGGGEGRTSG----GRHPVSPWGKPTK-GKRTRS 260
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BARBK (50S ribosomal protein L2 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rplB1 PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 8.556e-36 Identity = 76/163 (46.63%), Postives = 109/163 (66.87%), Query Frame = -3 Query: 169 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 657 P++ V D ++ A + ++ + G+ MPL M +G I+HN+E+ PG+GG++ R+AG A+++ ++RL SG ++L+ + C AT+G VSNP HG KAG+SRW G+RP VRGVAMNPVDHPHGGGEGR+ GR ++PWGKP K G +T S Sbjct: 107 PQRLDVGDTVV---AGLSVDVKPGNAMPLGNMPVGAIVHNVEMKPGKGGQIARSAGAYAQLVGRD-QGMAILRLNSGEQRLVSSNCFATVGAVSNPDHGNINDGKAGRSRWRGKRPHVRGVAMNPVDHPHGGGEGRTSG----GRHPVSPWGKPTK-GKRTRS 260
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_NITHX (50S ribosomal protein L2 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rplB PE=3 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 1.117e-35 Identity = 79/163 (48.47%), Postives = 108/163 (66.26%), Query Frame = -3 Query: 169 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 657 P++ V D ++ +VD+ G+ MPL M +GTI+HN+E+ G+GG+L R+AGT A+I+ + ++RL SG ++L+ RCR IG VSNP H + KAG++RW+GRRP RGV MNP+DHPHGGGEGR+ GR +TPWGKP K G KT S Sbjct: 107 PQRLAVGDTVVAGN-YVDVKP--GNVMPLGNMPVGTIVHNVEMKIGKGGQLARSAGTYAQIVGRD-HDYVILRLNSGEQRLVHGRCRGAIGAVSNPDHMNTSIGKAGRTRWMGRRPHNRGVVMNPIDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKTRS 260
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_GEOSW (50S ribosomal protein L2 OS=Geobacillus sp. (strain WCH70) GN=rplB PE=3 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 1.117e-35 Identity = 78/152 (51.32%), Postives = 105/152 (69.08%), Query Frame = -3 Query: 175 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 627 M M+ D + ++G+ +PL + +GT +HNIE+ PG+GG+LVRAAGTSA++L + + +VRL SG ++I CRAT+G V N H K+ KAG++RWLG RP VRG MNPVDHPHGGGEG++ GR S +TPWGKP G+KT Sbjct: 114 MEIMSGPDADIKVGNALPLENIPVGTFVHNIELKPGRGGQLVRAAGTSAQVLGKE-GKYVIVRLASGEVRMILGACRATVGEVGNEQHELVKIGKAGRARWLGIRPTVRGSVMNPVDHPHGGGEGKAPI----GRKSPMTPWGKP-TLGFKT 259
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BEII9 (50S ribosomal protein L2 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplB PE=3 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 1.117e-35 Identity = 82/161 (50.93%), Postives = 107/161 (66.46%), Query Frame = -3 Query: 175 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 657 P+K V D+++ VD+ G+ M LA M +GTI+HNIE+ G+G +VR+AGT A+++ + +VRL SG ++LI +C AT+G VSNP H + KAG+SRWLGRRP RGV MNPVDHPHGGGEGR+ GR +TPWGKP K G KT Sbjct: 107 PQKLAVGDEVISGQ-QVDVKP--GNAMALANMPVGTIVHNIEMKIGKGAAMVRSAGTYAQVVGRD-QGYVIVRLNSGEQRLIHGQCFATVGAVSNPDHMNASIGKAGRSRWLGRRPHNRGVTMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKT 258
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_AGRRK (50S ribosomal protein L2 OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=rplB PE=3 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 1.117e-35 Identity = 79/171 (46.20%), Postives = 109/171 (63.74%), Query Frame = -3 Query: 169 GDPSKQEKPKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 681 GD + P++ DK++ VD+ G+ MPL + +G+IIHN+E+ PG+GG++ R+AG A+++ ++RL SG ++L+ C ATIG VSNP HG KAG+SRW G++P VRGV MNPVDHPHGGGEGR+ GR +TPWGKP K G +T S Sbjct: 99 GDQAYILAPQRLAAGDKVIASEKAVDVKP--GNTMPLQFIPVGSIIHNVEMKPGKGGQIARSAGGYAQLVGRD-QGMAILRLNSGEQRLVHGTCLATIGAVSNPDHGNINDGKAGRSRWRGKKPHVRGVVMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKRTRS 261 The following BLAST results are available for this feature:
BLAST of CX069469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069469 ID=CX069469; Name=CX069469; organism=Citrus sinensis; type=EST; length=887bpback to top |