CX069466

Overview
NameCX069466
Unique NameCX069466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069466_ssr48 microsatellite CX069466_ssr48:48..59. BLAST: Citrus ESTs to TAIR9
Csv1_Contig6370 contig Csv1_Contig6370:119..991. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_DRANE (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Draba nemorosa GN=ndhG PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 1.159e-61
Identity = 119/159 (74.84%), Postives = 129/159 (81.13%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                     NPI+SAFSLG VLVCISLFYILSNSHFVAAAQLLIYVGA+NVLIIFAVMFMN S+YS DF   LWT+GDG+TSLVCT++ FSLI+TILDTSWY +IWTTR NQI+EQDLISNSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGFGLLVGGLGVVLLPNPIFSAFSLGFVLVCISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNDSEYSTDF--TLWTVGDGITSLVCTTLLFSLISTILDTSWYRVIWTTRLNQILEQDLISNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_CERDE (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Ceratophyllum demersum GN=ndhG PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 1.159e-61
Identity = 121/159 (76.10%), Postives = 131/159 (82.39%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                   FT PIYSAFSLGLV VCISLFYI SNS+FVAAAQLLIYVGAVNVLI+FAVMFMNGS+Y KDF  +LWT+GDG+TSLVCTSI FSLITTIL+TSWYGIIWTTR+NQIIEQDL SN QQ+GIHLSTDF+LPFE
Sbjct:    1 MDLPGPIHDILLVFLGSGLILGGLGVVLFTTPIYSAFSLGLVFVCISLFYIPSNSYFVAAAQLLIYVGAVNVLIVFAVMFMNGSEYYKDF--HLWTVGDGITSLVCTSILFSLITTILETSWYGIIWTTRSNQIIEQDLTSNVQQMGIHLSTDFYLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_BARVE (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Barbarea verna GN=ndhG PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 1.159e-61
Identity = 119/159 (74.84%), Postives = 130/159 (81.76%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                     NPI+SAFSLG VLVCISL YILSNSHFVAAAQLLIYVGA+NVLIIFAVMFMN S+YS D  LNLWT+G+G+TSLVCT+I FSL++TILDTSWYG+IWTTR NQI+EQDLISNSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGLLVGGLGVVLLPNPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNDSEYSTD--LNLWTVGNGITSLVCTTILFSLMSTILDTSWYGVIWTTRLNQILEQDLISNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_LEPVR (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Lepidium virginicum GN=ndhG PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.977e-61
Identity = 118/159 (74.21%), Postives = 129/159 (81.13%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                     NPI+SAFSLG VL CISL YILSNSHFVAAAQLLIYVGA+NVLIIFAVMFMN S+YS DF  NLWT+G+G+TSLVCT+I FSL++TILDTSWYG+IWTTR NQI+EQDLISNSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGLLVGGLGVVLLPNPIFSAFSLGFVLFCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNDSEYSTDF--NLWTVGNGITSLVCTTILFSLLSTILDTSWYGVIWTTRLNQILEQDLISNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_OLIPU (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Olimarabidopsis pumila GN=ndhG PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 3.372e-61
Identity = 118/159 (74.21%), Postives = 129/159 (81.13%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                     NPI+SAFSLG VLVCISL YILSNSHFVAAAQLLIYVGA+NVLIIFAVMFMN S+YS DF  NLWT+G+G+TSLVCT+I F L++TILDTSWYG+IWTTR NQI+EQDLISNSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGLLVGGLGVVLLPNPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNDSEYSTDF--NLWTVGNGITSLVCTTILFLLMSTILDTSWYGVIWTTRLNQILEQDLISNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_PIPCE (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Piper cenocladum GN=ndhG PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 5.753e-61
Identity = 119/159 (74.84%), Postives = 129/159 (81.13%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            M LPGPIHD                    TN IYSAFSLG VLVCISLFYILSNS+FVAAAQLLIYVGA+NVLIIFAVMFM GS+YS DF  ++WT+GDG+TSLVCTSIFFSLITTILDTSWYGIIWTTR+NQI+EQDL+SN QQIGIHL TDF LPFE
Sbjct:    1 MGLPGPIHDILLVFLGSGIVLGSLGVILLTNTIYSAFSLGFVLVCISLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSNDF--SIWTVGDGVTSLVCTSIFFSLITTILDTSWYGIIWTTRSNQIMEQDLLSNVQQIGIHLVTDFILPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_NASOF (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Nasturtium officinale GN=ndhG PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 5.753e-61
Identity = 118/159 (74.21%), Postives = 129/159 (81.13%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                     NPI+SAFSLG VLVCISL YILSNSHFVAAAQLLIYVGA+NVLIIFAVMFMN S+YS D   NLWT+G+G+TSLVCT+I FSL++TILDTSWYG+IWTTR NQI+EQDLISNSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGLLVGGLGVVLLPNPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNDSEYSTDS--NLWTVGNGITSLVCTTILFSLMSTILDTSWYGVIWTTRLNQILEQDLISNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_NANDO (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Nandina domestica GN=ndhG PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 5.753e-61
Identity = 118/159 (74.21%), Postives = 129/159 (81.13%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLP PIHD                    TNPIYSAFSLGLVLVCISLF+I +NSHFVAAAQLLIYVGA+NVLI+FAVMFMNGS+Y  DF  +LWT+GDG+TSLVCTSIF SLITTI DTSWYGIIWTTR+NQIIEQDLI+  QQ+GIHLSTDFFLPFE
Sbjct:    1 MDLPAPIHDFLLVFLGLGLIVGGLGVVLLTNPIYSAFSLGLVLVCISLFHIPANSHFVAAAQLLIYVGAINVLIVFAVMFMNGSEYYNDF--HLWTVGDGVTSLVCTSIFVSLITTISDTSWYGIIWTTRSNQIIEQDLINKGQQLGIHLSTDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_JASNU (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Jasminum nudiflorum GN=ndhG PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 5.753e-61
Identity = 119/159 (74.84%), Postives = 129/159 (81.13%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                     NPIYSAFSLGLVL CISLFYIL NS+FVAAAQLLIYVGA+NVLIIFAVMFMNGS+Y KDF L  WT+GDG+TS+VCTS+F SLITTI DTSWYGIIWTT++NQIIE+DLISNSQQIGIHL TDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLELGLILGSLGVVFLPNPIYSAFSLGLVLFCISLFYILLNSYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDFYL--WTVGDGVTSMVCTSLFISLITTIPDTSWYGIIWTTKSNQIIEKDLISNSQQIGIHLVTDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_CHLSC (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Chloranthus spicatus GN=ndhG PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 5.753e-61
Identity = 121/159 (76.10%), Postives = 128/159 (80.50%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                    TNPI SAFSLGLVLVCISLFYI SNS+FVAAAQLLIYVGA+NVLI+FAVMFMNGS+Y  DF  +LWTIGDG TSLVCTSI FSLITTI DTSWYGIIWTTR+NQIIEQDL SN QQIGIHLSTDF+LPFE
Sbjct:    1 MDLPGPIHDILLVFLGSGLILGGLGVVLLTNPISSAFSLGLVLVCISLFYIPSNSYFVAAAQLLIYVGAINVLIVFAVMFMNGSEYYNDF--HLWTIGDGFTSLVCTSILFSLITTIPDTSWYGIIWTTRSNQIIEQDLTSNVQQIGIHLSTDFYLPFE 157
The following BLAST results are available for this feature:
BLAST of CX069466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
NU6C_DRANE1.159e-6174.84NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_CERDE1.159e-6176.10NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_BARVE1.159e-6174.84NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_LEPVR1.977e-6174.21NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_OLIPU3.372e-6174.21NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_PIPCE5.753e-6174.84NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_NASOF5.753e-6174.21NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_NANDO5.753e-6174.21NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_JASNU5.753e-6174.84NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_CHLSC5.753e-6176.10NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_10F05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F05-K10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069466 ID=CX069466; Name=CX069466; organism=Citrus sinensis; type=EST; length=873bp
CATCATTAACCAACTCCGTACCAATTTCGATTCATTTCAATCTGAACAAT
AATAATAATGCAAGTGATTTGGTTGCTTAGAATATACCAGGTACGGAACA
AAAGAATCCATTTGGTAATAGATCGAATAAAAAAAATTCTATTTTGATTT
TCTATTGATCTGTGAATAGTATTCAACTAGACTTTTCAAGAATTTAAGGG
AAATGAATGTGATAACACATAATGAATGTGATAACACATAAAAAGTCGAA
TTGGGATTGCTGTTCCTAGTTATAAAGATTTGTTATTGACGCGCCACGGC
AATTGCACCTATTAAAGCAACTAAAAGAATTATTGAAACGAGTTCAAATG
GAAGAAAAAAGTCTGTTGATAAATGAATTCCAATTTGTTGACTATTACTT
ATCAAATCTTGTTCAATAATCTGGTTGGCTCGTGTAGTCCAAATAATCCC
GTACCACGATGTATCGAGAATAGTAGTGATTAGCGAAAAAAAAATACTTG
TACAAACCAGAGAAGTAAGACCATCGCCAATAGTCCAAAGATTCAACTGA
AAATCTTTGGAATAGTCTGAGCCGTTCATGAACATTACAGCAAATATGAT
TAAAACATTTACAGCTCCCACGTAAATAAGGAGTTGCGCGGCAGCTACAA
AATGGGAATTTGATAGAATATAGAATAATGATATACAAACAAGAACCAAT
CCCAAGGAAAAGGCAGAATAAATTGGGTTGGTAAATAATACCACTCCCAG
ACCTCCTAATATAAGACCCGATCCCAGAAAAACTAAAATAAAATCGTGTA
TTGGTCCAGGCAAATCCATTATATTAAAATAGGAGATAAATAAATCGAAA
TCTTTTTCATGACCTTATTGAGC
back to top