CX069466

Overview
NameCX069466
Unique NameCX069466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069466_ssr48 microsatellite CX069466_ssr48:48..59. BLAST: Citrus ESTs to TAIR9
Csv1_Contig6370 contig Csv1_Contig6370:119..991. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_ARATH (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Arabidopsis thaliana GN=ndhG PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 5.753e-61
Identity = 118/159 (74.21%), Postives = 129/159 (81.13%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                     NPI+SAFSLG VLVCISL YILSNSHFVAAAQLLIYVGA+NVLIIFAVMFMN S+YS DF  NLWTIG+G+TSLVCT+I F L++TILDTSWYG+IWTT+ NQI+EQDLISNSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGLLVGGLGVVLLPNPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNDSEYSTDF--NLWTIGNGITSLVCTTILFLLMSTILDTSWYGVIWTTKLNQILEQDLISNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_PELHO (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Pelargonium hortorum GN=ndhG PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 7.513e-61
Identity = 116/159 (72.96%), Postives = 130/159 (81.76%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                    TNPIYSAFSLG V +CISLFYILSNS+FVAAAQLLIYVGA+NVLI+FAVMFMNGS+Y KDF  +LWT+GDGLTSL+CT +F SLITTILDTSWYGI+WTT++NQIIE+D ISNSQQ+GI LSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGIILGGLGVVLLTNPIYSAFSLGFVFICISLFYILSNSYFVAAAQLLIYVGAINVLILFAVMFMNGSEYYKDF--HLWTLGDGLTSLICTILFLSLITTILDTSWYGILWTTKSNQIIEKDFISNSQQLGILLSTDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_ILLOL (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Illicium oligandrum GN=ndhG PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 7.513e-61
Identity = 118/159 (74.21%), Postives = 130/159 (81.76%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                    TNP+YSAFSLGLVLVCISLF+I SNS+FVAAAQLLIYVGA+NVLI+FAVMFMNGS+Y   F  +LWT+GDG+TSL+CTSI FSLI TILDTSWYGIIWTTR+NQIIEQDLISN QQIGIHLSTDF+LPFE
Sbjct:    1 MDLPGPIHDIFLVFLGSGLILGGLGVVLLTNPVYSAFSLGLVLVCISLFHIPSNSYFVAAAQLLIYVGAINVLIVFAVMFMNGSEYYNYF--HLWTVGDGVTSLICTSILFSLIKTILDTSWYGIIWTTRSNQIIEQDLISNVQQIGIHLSTDFYLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_CAPBU (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Capsella bursa-pastoris GN=ndhG PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 7.513e-61
Identity = 117/159 (73.58%), Postives = 129/159 (81.13%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                     NPI+SAFSLG VLVCISL YILSNSHFVAAAQLLIYVGA+NVLIIFAVMFMN S+YS DF  NLWT+G+G+TSLVCT+I F L++TILDTSWYG+IWTT+ NQI+EQDLISNSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGLLVGGLGVVLLPNPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNDSEYSTDF--NLWTVGNGITSLVCTTILFLLMSTILDTSWYGVIWTTKLNQILEQDLISNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_ARAHI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Arabis hirsuta GN=ndhG PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 7.513e-61
Identity = 117/159 (73.58%), Postives = 128/159 (80.50%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                     NPI+SAFSLG VLVCISL YIL+NSHFVAAAQLLIYVGA+NVLIIFAVMFMN S+Y  DF  NLWT+GDG+TSLVCT++ FSLI+TILDTSWYG+IWTTR NQI+EQDLISNSQQIG HLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGLIVGGLGVVLLPNPIFSAFSLGFVLVCISLLYILANSHFVAAAQLLIYVGAINVLIIFAVMFMNDSEYFTDF--NLWTVGDGITSLVCTTLLFSLISTILDTSWYGVIWTTRLNQILEQDLISNSQQIGSHLSTDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_AETCO (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Aethionema cordifolium GN=ndhG PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 9.812e-61
Identity = 118/159 (74.21%), Postives = 129/159 (81.13%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                   F NPI+SAFSLG VLVCISL YILSNSHFVAAAQLLIYVGA+ VLIIFAVMFMN S+YS D  LN WT+GDG+TS++CT+I FSLI+TILDTSWYG+IWTTR NQI+EQDLISNSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGLLFGSLGVVLFPNPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAITVLIIFAVMFMNDSEYSTD--LNRWTVGDGITSVICTTILFSLISTILDTSWYGVIWTTRLNQILEQDLISNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_TOBAC (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Nicotiana tabacum GN=ndhG PE=3 SV=2)

HSP 1 Score: 233.417 bits (594), Expect = 1.282e-60
Identity = 119/159 (74.84%), Postives = 128/159 (80.50%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDL  PIHD                     NPIYSAFSLGLVLVC SLFYILSNS+FVAAAQLLIYVGA+NVLIIFAVMFMNGS+Y KDF  +LWT+GDG+TS+VC S+F SLITTI DTSWYGIIWTTR+NQIIEQD ISNSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLSEPIHDFLLVFLGSGLILGGLGVVLLPNPIYSAFSLGLVLVCTSLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDF--HLWTVGDGITSMVCISLFISLITTISDTSWYGIIWTTRSNQIIEQDFISNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_NICTO (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Nicotiana tomentosiformis GN=ndhG PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 1.282e-60
Identity = 119/159 (74.84%), Postives = 128/159 (80.50%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDL  PIHD                     NPIYSAFSLGLVLVC SLFYILSNS+FVAAAQLLIYVGA+NVLIIFAVMFMNGS+Y KDF  +LWT+GDG+TS+VC S+F SLITTI DTSWYGIIWTTR+NQIIEQD ISNSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLSEPIHDFLLVFLGSGLILGGLGVVLLPNPIYSAFSLGLVLVCTSLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDF--HLWTVGDGITSMVCISLFISLITTISDTSWYGIIWTTRSNQIIEQDFISNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_NICSY (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Nicotiana sylvestris GN=ndhG PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 1.282e-60
Identity = 119/159 (74.84%), Postives = 128/159 (80.50%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDL  PIHD                     NPIYSAFSLGLVLVC SLFYILSNS+FVAAAQLLIYVGA+NVLIIFAVMFMNGS+Y KDF  +LWT+GDG+TS+VC S+F SLITTI DTSWYGIIWTTR+NQIIEQD ISNSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLSEPIHDFLLVFLGSGLILGGLGVVLLPNPIYSAFSLGLVLVCTSLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDF--HLWTVGDGITSMVCISLFISLITTISDTSWYGIIWTTRSNQIIEQDFISNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_TRACE (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Trachelium caeruleum GN=ndhG PE=3 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.674e-60
Identity = 117/159 (73.58%), Postives = 130/159 (81.76%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                     NPIYSAFSLGLVLVCISL YILSNSHF+AAAQLLIYVGA+NVLIIFAVMF+NGS+Y KD  LN WT+GDG+TS+VCTS+F SLITTI DTSWYGIIWTT++NQIIEQDLI+NSQ+IGIHLSTDF +PFE
Sbjct:    1 MDLPGPIHDFILVFLGLVLILGGLAVVLLPNPIYSAFSLGLVLVCISLLYILSNSHFLAAAQLLIYVGAINVLIIFAVMFLNGSEYYKD--LNPWTVGDGVTSVVCTSLFASLITTIPDTSWYGIIWTTKSNQIIEQDLINNSQEIGIHLSTDFLIPFE 157
The following BLAST results are available for this feature:
BLAST of CX069466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
NU6C_ARATH5.753e-6174.21NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_PELHO7.513e-6172.96NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_ILLOL7.513e-6174.21NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_CAPBU7.513e-6173.58NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_ARAHI7.513e-6173.58NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_AETCO9.812e-6174.21NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_TOBAC1.282e-6074.84NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_NICTO1.282e-6074.84NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_NICSY1.282e-6074.84NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_TRACE1.674e-6073.58NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10F05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F05-K10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069466 ID=CX069466; Name=CX069466; organism=Citrus sinensis; type=EST; length=873bp
CATCATTAACCAACTCCGTACCAATTTCGATTCATTTCAATCTGAACAAT
AATAATAATGCAAGTGATTTGGTTGCTTAGAATATACCAGGTACGGAACA
AAAGAATCCATTTGGTAATAGATCGAATAAAAAAAATTCTATTTTGATTT
TCTATTGATCTGTGAATAGTATTCAACTAGACTTTTCAAGAATTTAAGGG
AAATGAATGTGATAACACATAATGAATGTGATAACACATAAAAAGTCGAA
TTGGGATTGCTGTTCCTAGTTATAAAGATTTGTTATTGACGCGCCACGGC
AATTGCACCTATTAAAGCAACTAAAAGAATTATTGAAACGAGTTCAAATG
GAAGAAAAAAGTCTGTTGATAAATGAATTCCAATTTGTTGACTATTACTT
ATCAAATCTTGTTCAATAATCTGGTTGGCTCGTGTAGTCCAAATAATCCC
GTACCACGATGTATCGAGAATAGTAGTGATTAGCGAAAAAAAAATACTTG
TACAAACCAGAGAAGTAAGACCATCGCCAATAGTCCAAAGATTCAACTGA
AAATCTTTGGAATAGTCTGAGCCGTTCATGAACATTACAGCAAATATGAT
TAAAACATTTACAGCTCCCACGTAAATAAGGAGTTGCGCGGCAGCTACAA
AATGGGAATTTGATAGAATATAGAATAATGATATACAAACAAGAACCAAT
CCCAAGGAAAAGGCAGAATAAATTGGGTTGGTAAATAATACCACTCCCAG
ACCTCCTAATATAAGACCCGATCCCAGAAAAACTAAAATAAAATCGTGTA
TTGGTCCAGGCAAATCCATTATATTAAAATAGGAGATAAATAAATCGAAA
TCTTTTTCATGACCTTATTGAGC
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